Wall clock time and date at job start Tue Mar 31 2020 00:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47076 * 2 1 4 4 C 1.53008 * 109.47047 * 64.99739 * 3 2 1 5 5 C 1.53001 * 109.47024 * 184.44079 * 4 3 2 6 6 C 1.52998 * 109.47539 * 184.99863 * 3 2 1 7 7 N 1.46903 * 109.47009 * 63.70076 * 6 3 2 8 8 C 1.46896 * 111.00131 * 202.23532 * 7 6 3 9 9 C 1.52994 * 109.47416 * 72.32172 * 8 7 6 10 10 C 1.47204 * 109.47203 * 183.69108 * 9 8 7 11 11 N 6.56883 * 164.59318 * 191.47600 * 2 1 3 12 12 C 1.46897 * 110.99595 * 78.27761 * 7 6 3 13 13 C 1.53009 * 109.47000 * 187.87087 * 12 7 6 14 14 C 1.50701 * 115.54914 * 53.82861 * 13 12 7 15 15 H 1.07991 * 119.99847 * 215.43041 * 14 13 12 16 16 C 1.37881 * 120.00034 * 35.15885 * 14 13 12 17 17 N 1.31513 * 119.99723 * 11.31684 * 16 14 13 18 18 Si 1.86790 * 120.00126 * 191.31904 * 16 14 13 19 19 H 1.48505 * 109.47041 * 4.94810 * 18 16 14 20 20 H 1.48497 * 109.47528 * 124.95029 * 18 16 14 21 21 H 1.48503 * 109.47452 * 244.95117 * 18 16 14 22 22 C 1.53001 * 117.49898 * 199.49873 * 13 12 7 23 23 C 1.52997 * 117.49497 * 268.15979 * 13 12 7 24 24 H 1.09001 * 109.47290 * 299.99913 * 1 2 3 25 25 H 1.08999 * 109.47376 * 60.00423 * 1 2 3 26 26 H 1.09002 * 109.46941 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47290 * 240.00087 * 2 1 3 28 28 H 1.08999 * 109.46915 * 119.99844 * 2 1 3 29 29 H 1.08999 * 109.47181 * 304.99909 * 3 2 1 30 30 H 1.08995 * 109.46930 * 304.44450 * 4 3 2 31 31 H 1.08997 * 109.46761 * 64.44535 * 4 3 2 32 32 H 1.08998 * 109.47063 * 293.88783 * 5 4 3 33 33 H 1.09007 * 109.47022 * 53.88700 * 5 4 3 34 34 H 1.09002 * 109.46816 * 173.88148 * 5 4 3 35 35 H 1.09006 * 109.46712 * 303.70757 * 6 3 2 36 36 H 1.08997 * 109.47421 * 183.70459 * 6 3 2 37 37 H 1.09000 * 109.46932 * 192.32710 * 8 7 6 38 38 H 1.09005 * 109.46601 * 312.31734 * 8 7 6 39 39 H 1.08996 * 109.47204 * 303.69035 * 9 8 7 40 40 H 1.09001 * 109.47206 * 63.69388 * 9 8 7 41 41 H 1.08999 * 109.47129 * 67.87412 * 12 7 6 42 42 H 1.09001 * 109.47369 * 307.86796 * 12 7 6 43 43 H 0.97001 * 120.00121 * 174.27862 * 17 16 14 44 44 H 1.08993 * 117.49971 * 215.00152 * 22 13 12 45 45 H 1.09004 * 117.49526 * 0.02628 * 22 13 12 46 46 H 1.08997 * 117.50273 * 359.97438 * 23 13 12 47 47 H 1.09008 * 117.49525 * 144.97608 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1266 1.3074 5 6 2.0478 3.5992 1.2615 6 6 3.5648 1.4445 -0.1257 7 7 3.9501 0.8677 -1.4207 8 6 5.3307 0.3673 -1.3842 9 6 5.3886 -0.9088 -0.5422 10 6 6.7850 -1.3612 -0.4322 11 7 7.8628 -1.7103 -0.3472 12 6 3.7719 1.8427 -2.5049 13 6 3.9929 1.1527 -3.8526 14 6 3.1630 -0.0817 -4.0947 15 1 3.5783 -0.9119 -4.6465 16 6 1.8754 -0.1534 -3.6067 17 7 1.2925 0.9243 -3.1288 18 14 0.9591 -1.7810 -3.6245 19 1 1.8685 -2.8558 -4.0970 20 1 0.4878 -2.0988 -2.2527 21 1 -0.2074 -1.6824 -4.5382 22 6 4.3059 2.0412 -5.0583 23 6 5.4070 1.1789 -4.4361 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6054 1.9815 -0.8418 30 1 0.5550 2.0556 1.4352 31 1 2.1330 1.6357 2.1436 32 1 3.1352 3.6714 1.2430 33 1 1.6375 4.0637 0.3648 34 1 1.6644 4.1115 2.1439 35 1 3.9964 0.8500 0.6796 36 1 3.9335 2.4680 -0.0596 37 1 5.6648 0.1488 -2.3985 38 1 5.9798 1.1237 -0.9429 39 1 4.9930 -0.7057 0.4529 40 1 4.7914 -1.6861 -1.0190 41 1 4.4931 2.6516 -2.3883 42 1 2.7611 2.2487 -2.4661 43 1 0.3602 0.8938 -2.8625 44 1 3.9115 1.7329 -6.0265 45 1 4.3547 3.1173 -4.8912 46 1 6.1798 1.6880 -3.8602 47 1 5.7373 0.3031 -4.9948 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602781413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:21 Heat of formation + Delta-G solvation = 39.428895 kcal Electronic energy + Delta-G solvation = -23746.243628 eV Core-core repulsion = 20736.575330 eV Total energy + Delta-G solvation = -3009.668298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -38.49349 -36.47074 -36.36439 -34.45772 -32.08156 -31.16594 -30.79448 -27.63229 -25.63658 -24.79809 -23.79298 -22.03477 -21.20178 -20.79252 -19.14740 -18.78773 -17.14893 -16.01361 -15.32654 -14.84553 -14.64406 -14.21445 -14.17739 -13.77961 -13.45178 -13.40276 -13.23472 -12.95227 -12.68589 -12.39472 -12.07691 -11.92205 -11.61061 -11.48556 -11.34445 -11.19524 -11.00922 -10.93367 -10.80679 -10.65335 -10.48614 -10.40497 -10.33059 -10.01024 -9.87698 -9.63779 -9.55204 -9.19003 -8.94421 -8.56005 -7.94786 -7.23350 -5.88607 -3.88645 3.00773 3.05381 3.33076 3.43349 3.47404 4.22071 4.48226 4.87180 5.16588 5.32934 5.36296 5.45043 5.51665 5.60740 5.65184 5.69030 5.84115 5.90480 5.97364 6.03637 6.07926 6.17874 6.24183 6.26024 6.29999 6.33514 6.38580 6.43179 6.48072 6.53121 6.60005 6.68421 6.70028 6.76934 6.83969 6.88729 6.97497 7.19254 7.26459 7.34970 7.38787 7.60724 7.81928 8.04846 8.15212 8.18821 8.57204 9.03105 9.70020 11.13042 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.009240 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.484515 B = 3029.549097 C = 3961.045838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.077 4.077 4 C -0.122 4.122 5 C -0.151 4.151 6 C 0.059 3.941 7 N -0.494 5.494 8 C 0.058 3.942 9 C -0.027 4.027 10 C 0.220 3.780 11 N -0.461 5.461 12 C 0.105 3.895 13 C 0.071 3.929 14 C -0.477 4.477 15 H 0.052 0.948 16 C 0.100 3.900 17 N -0.864 5.864 18 Si 0.873 3.127 19 H -0.278 1.278 20 H -0.275 1.275 21 H -0.292 1.292 22 C -0.207 4.207 23 C -0.224 4.224 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.093 0.907 28 H 0.035 0.965 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.097 0.903 38 H 0.020 0.980 39 H 0.101 0.899 40 H 0.119 0.881 41 H -0.016 1.016 42 H 0.122 0.878 43 H 0.257 0.743 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 2.469 7.859 8.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.095 4.095 4 C -0.160 4.160 5 C -0.208 4.208 6 C -0.069 4.069 7 N -0.217 5.217 8 C -0.072 4.072 9 C -0.068 4.068 10 C -0.097 4.097 11 N -0.139 5.139 12 C -0.021 4.021 13 C 0.070 3.930 14 C -0.514 4.514 15 H 0.070 0.930 16 C -0.104 4.104 17 N -0.501 5.501 18 Si 0.701 3.299 19 H -0.203 1.203 20 H -0.201 1.201 21 H -0.219 1.219 22 C -0.245 4.245 23 C -0.261 4.261 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.115 0.885 38 H 0.038 0.962 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.002 0.998 42 H 0.140 0.860 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.321 1.590 8.058 8.220 hybrid contribution -0.318 -0.036 0.026 0.321 sum 0.003 1.554 8.084 8.232 Atomic orbital electron populations 1.21822 0.97639 1.00114 1.01068 1.21394 0.94225 0.96619 1.02016 1.21145 0.94608 0.96798 0.96998 1.21656 1.00739 0.95181 0.98398 1.21809 1.01102 0.96927 1.00989 1.22202 0.96342 0.96545 0.91794 1.61613 1.19107 1.38367 1.02583 1.22031 0.91282 0.92909 1.00929 1.19428 0.83373 1.00690 1.03296 1.29484 0.95269 0.92648 0.92310 1.81150 1.12760 1.10080 1.09890 1.21801 1.02036 0.89439 0.88873 1.18962 0.89823 0.95355 0.88878 1.20253 0.97798 0.99085 1.34281 0.93002 1.24579 0.96953 0.95179 0.93659 1.69768 1.10992 1.26825 1.42533 0.86901 0.79685 0.85439 0.77840 1.20310 1.20101 1.21885 1.22971 1.05231 0.95318 1.01011 1.22997 0.93735 1.02058 1.07330 0.94109 0.92190 0.94382 0.88839 0.94660 0.88503 0.92208 0.93114 0.93021 0.92631 0.93863 0.92601 0.95834 0.88525 0.96232 0.88104 0.86300 0.99784 0.86030 0.93209 0.90554 0.92154 0.92014 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.67 37.16 0.36 -2.01 16 2 C -0.11 -1.71 5.34 -26.73 -0.14 -1.86 16 3 C -0.08 -1.19 1.94 -90.62 -0.18 -1.36 16 4 C -0.12 -1.59 5.26 -26.73 -0.14 -1.74 16 5 C -0.15 -1.86 9.50 37.16 0.35 -1.51 16 6 C 0.06 0.91 4.07 -3.82 -0.02 0.89 16 7 N -0.49 -8.65 3.26 -234.63 -0.77 -9.42 16 8 C 0.06 0.93 4.75 -3.83 -0.02 0.92 16 9 C -0.03 -0.37 5.82 -29.52 -0.17 -0.54 16 10 C 0.22 3.31 15.43 -20.76 -0.32 2.99 16 11 N -0.46 -7.97 18.54 42.16 0.78 -7.18 16 12 C 0.11 2.12 3.87 -3.82 -0.01 2.11 16 13 C 0.07 1.54 1.36 -155.66 -0.21 1.33 16 14 C -0.48 -11.52 8.72 -34.44 -0.30 -11.83 16 15 H 0.05 1.32 7.84 -52.49 -0.41 0.91 16 16 C 0.10 2.36 4.49 -17.82 -0.08 2.28 16 17 N -0.86 -19.95 9.86 55.43 0.55 -19.40 16 18 Si 0.87 19.25 28.92 -169.99 -4.92 14.34 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 23 C -0.22 -4.55 8.04 -26.69 -0.21 -4.76 16 24 H 0.04 0.57 6.47 -51.93 -0.34 0.23 16 25 H 0.06 1.04 7.14 -51.93 -0.37 0.66 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.81 6.16 -51.93 -0.32 1.49 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 1.78 6.00 -51.93 -0.31 1.47 16 30 H 0.06 0.78 6.37 -51.93 -0.33 0.45 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.63 6.77 -51.93 -0.35 0.28 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.76 6.21 -51.93 -0.32 0.44 16 36 H 0.02 0.36 6.33 -51.93 -0.33 0.03 16 37 H 0.10 1.74 5.14 -51.93 -0.27 1.47 16 38 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 39 H 0.10 1.17 6.47 -51.93 -0.34 0.83 16 40 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 41 H -0.02 -0.32 8.08 -51.93 -0.42 -0.74 16 42 H 0.12 2.70 4.71 -51.93 -0.24 2.46 16 43 H 0.26 5.83 7.32 -40.82 -0.30 5.53 16 44 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.06 1.18 8.01 -51.93 -0.42 0.76 16 47 H 0.07 1.49 8.14 -51.92 -0.42 1.07 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -24.03 360.48 -8.37 -32.39 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.08 Total: 3.60 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.36 Total: -19.76 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.56 Total: -36.00 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.92 Total: 14.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -24.03 -8.37 -32.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602781413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.823 kcal (2) G-P(sol) polarization free energy of solvation -24.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds