Wall clock time and date at job start Tue Mar 31 2020 00:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47076 * 2 1 4 4 C 1.53008 * 109.47047 * 64.99739 * 3 2 1 5 5 C 1.53001 * 109.47024 * 184.44079 * 4 3 2 6 6 C 1.52998 * 109.47539 * 184.99863 * 3 2 1 7 7 N 1.46903 * 109.47009 * 63.70076 * 6 3 2 8 8 C 1.46896 * 111.00131 * 202.23532 * 7 6 3 9 9 C 1.52994 * 109.47416 * 72.32172 * 8 7 6 10 10 C 1.47204 * 109.47203 * 183.69108 * 9 8 7 11 11 N 6.56883 * 164.59318 * 191.47600 * 2 1 3 12 12 C 1.46897 * 110.99595 * 78.27761 * 7 6 3 13 13 C 1.53009 * 109.47000 * 187.87087 * 12 7 6 14 14 C 1.50701 * 115.54914 * 53.82861 * 13 12 7 15 15 H 1.07991 * 119.99847 * 215.43041 * 14 13 12 16 16 C 1.37881 * 120.00034 * 35.15885 * 14 13 12 17 17 N 1.31513 * 119.99723 * 11.31684 * 16 14 13 18 18 Si 1.86790 * 120.00126 * 191.31904 * 16 14 13 19 19 H 1.48505 * 109.47041 * 4.94810 * 18 16 14 20 20 H 1.48497 * 109.47528 * 124.95029 * 18 16 14 21 21 H 1.48503 * 109.47452 * 244.95117 * 18 16 14 22 22 C 1.53001 * 117.49898 * 199.49873 * 13 12 7 23 23 C 1.52997 * 117.49497 * 268.15979 * 13 12 7 24 24 H 1.09001 * 109.47290 * 299.99913 * 1 2 3 25 25 H 1.08999 * 109.47376 * 60.00423 * 1 2 3 26 26 H 1.09002 * 109.46941 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47290 * 240.00087 * 2 1 3 28 28 H 1.08999 * 109.46915 * 119.99844 * 2 1 3 29 29 H 1.08999 * 109.47181 * 304.99909 * 3 2 1 30 30 H 1.08995 * 109.46930 * 304.44450 * 4 3 2 31 31 H 1.08997 * 109.46761 * 64.44535 * 4 3 2 32 32 H 1.08998 * 109.47063 * 293.88783 * 5 4 3 33 33 H 1.09007 * 109.47022 * 53.88700 * 5 4 3 34 34 H 1.09002 * 109.46816 * 173.88148 * 5 4 3 35 35 H 1.09006 * 109.46712 * 303.70757 * 6 3 2 36 36 H 1.08997 * 109.47421 * 183.70459 * 6 3 2 37 37 H 1.09000 * 109.46932 * 192.32710 * 8 7 6 38 38 H 1.09005 * 109.46601 * 312.31734 * 8 7 6 39 39 H 1.08996 * 109.47204 * 303.69035 * 9 8 7 40 40 H 1.09001 * 109.47206 * 63.69388 * 9 8 7 41 41 H 1.08999 * 109.47129 * 67.87412 * 12 7 6 42 42 H 1.09001 * 109.47369 * 307.86796 * 12 7 6 43 43 H 0.97001 * 120.00121 * 174.27862 * 17 16 14 44 44 H 1.08993 * 117.49971 * 215.00152 * 22 13 12 45 45 H 1.09004 * 117.49526 * 0.02628 * 22 13 12 46 46 H 1.08997 * 117.50273 * 359.97438 * 23 13 12 47 47 H 1.09008 * 117.49525 * 144.97608 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1266 1.3074 5 6 2.0478 3.5992 1.2615 6 6 3.5648 1.4445 -0.1257 7 7 3.9501 0.8677 -1.4207 8 6 5.3307 0.3673 -1.3842 9 6 5.3886 -0.9088 -0.5422 10 6 6.7850 -1.3612 -0.4322 11 7 7.8628 -1.7103 -0.3472 12 6 3.7719 1.8427 -2.5049 13 6 3.9929 1.1527 -3.8526 14 6 3.1630 -0.0817 -4.0947 15 1 3.5783 -0.9119 -4.6465 16 6 1.8754 -0.1534 -3.6067 17 7 1.2925 0.9243 -3.1288 18 14 0.9591 -1.7810 -3.6245 19 1 1.8685 -2.8558 -4.0970 20 1 0.4878 -2.0988 -2.2527 21 1 -0.2074 -1.6824 -4.5382 22 6 4.3059 2.0412 -5.0583 23 6 5.4070 1.1789 -4.4361 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6054 1.9815 -0.8418 30 1 0.5550 2.0556 1.4352 31 1 2.1330 1.6357 2.1436 32 1 3.1352 3.6714 1.2430 33 1 1.6375 4.0637 0.3648 34 1 1.6644 4.1115 2.1439 35 1 3.9964 0.8500 0.6796 36 1 3.9335 2.4680 -0.0596 37 1 5.6648 0.1488 -2.3985 38 1 5.9798 1.1237 -0.9429 39 1 4.9930 -0.7057 0.4529 40 1 4.7914 -1.6861 -1.0190 41 1 4.4931 2.6516 -2.3883 42 1 2.7611 2.2487 -2.4661 43 1 0.3602 0.8938 -2.8625 44 1 3.9115 1.7329 -6.0265 45 1 4.3547 3.1173 -4.8912 46 1 6.1798 1.6880 -3.8602 47 1 5.7373 0.3031 -4.9948 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602781413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:20 Heat of formation + Delta-G solvation = 30.679711 kcal Electronic energy + Delta-G solvation = -23746.623021 eV Core-core repulsion = 20736.575330 eV Total energy + Delta-G solvation = -3010.047691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.88093 -37.85186 -37.70171 -35.81093 -33.87139 -32.35330 -32.03293 -28.91106 -27.35534 -26.33591 -24.98084 -23.19508 -22.84238 -22.14540 -20.66632 -20.19865 -18.39749 -17.70692 -16.57875 -16.47324 -16.08417 -15.64148 -15.40377 -15.13311 -14.85034 -14.67876 -14.59351 -14.23131 -14.13512 -13.63904 -13.34792 -13.23764 -13.04457 -12.97457 -12.74770 -12.57891 -12.46864 -12.35383 -12.16366 -12.11991 -12.09511 -11.72089 -11.71342 -11.59444 -11.08596 -11.03584 -10.85594 -10.70759 -10.66536 -10.24892 -9.71278 -8.59130 -7.70648 -5.75376 1.52802 1.62110 1.65917 1.79279 1.85715 2.65974 2.98369 3.31433 3.67758 3.89893 4.15701 4.26052 4.28567 4.37538 4.42503 4.51469 4.58918 4.64719 4.71077 4.74306 4.82393 4.85856 4.90398 4.96141 5.03285 5.05137 5.14011 5.16010 5.21959 5.24696 5.25626 5.28518 5.32120 5.41467 5.51052 5.56258 5.62000 5.66420 5.68678 5.85915 6.04134 6.07209 6.27308 6.61915 6.62549 6.79599 6.86105 7.17329 7.83759 9.27679 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.009240 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.484515 B = 3029.549097 C = 3961.045838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.071 4.071 4 C -0.115 4.115 5 C -0.148 4.148 6 C 0.060 3.940 7 N -0.503 5.503 8 C 0.060 3.940 9 C -0.015 4.015 10 C 0.243 3.757 11 N -0.500 5.500 12 C 0.119 3.881 13 C 0.058 3.942 14 C -0.496 4.496 15 H 0.029 0.971 16 C 0.087 3.913 17 N -0.860 5.860 18 Si 0.906 3.094 19 H -0.289 1.289 20 H -0.264 1.264 21 H -0.302 1.302 22 C -0.215 4.215 23 C -0.205 4.205 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.030 0.970 39 H 0.130 0.870 40 H 0.119 0.881 41 H -0.016 1.016 42 H 0.101 0.899 43 H 0.257 0.743 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.803 2.687 10.082 10.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.090 4.090 4 C -0.153 4.153 5 C -0.206 4.206 6 C -0.068 4.068 7 N -0.225 5.225 8 C -0.070 4.070 9 C -0.056 4.056 10 C -0.073 4.073 11 N -0.178 5.178 12 C -0.008 4.008 13 C 0.057 3.943 14 C -0.533 4.533 15 H 0.048 0.952 16 C -0.118 4.118 17 N -0.496 5.496 18 Si 0.736 3.264 19 H -0.215 1.215 20 H -0.189 1.189 21 H -0.230 1.230 22 C -0.254 4.254 23 C -0.242 4.242 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.148 0.852 40 H 0.137 0.863 41 H 0.002 0.998 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.334 1.814 10.291 10.455 hybrid contribution -0.366 -0.093 -0.709 0.804 sum -0.032 1.721 9.581 9.735 Atomic orbital electron populations 1.21780 0.97519 0.99921 1.01079 1.21332 0.94349 0.96945 1.01407 1.21028 0.94560 0.96137 0.97229 1.21590 1.00969 0.95435 0.97339 1.21775 1.01168 0.96523 1.01086 1.22267 0.96296 0.97006 0.91194 1.61523 1.20111 1.37904 1.02977 1.21957 0.90561 0.94175 1.00305 1.19397 0.82441 0.99364 1.04364 1.29622 0.95112 0.91575 0.91034 1.81180 1.13943 1.11346 1.11365 1.21485 1.00669 0.89696 0.88968 1.19025 0.90535 0.94890 0.89869 1.20242 0.98579 0.99480 1.35043 0.95233 1.24788 0.97085 0.96327 0.93568 1.69836 1.10898 1.26978 1.41901 0.86414 0.78366 0.83735 0.77934 1.21470 1.18886 1.23001 1.22979 1.06028 0.95967 1.00376 1.22914 0.93408 1.01433 1.06485 0.91997 0.94272 0.94633 0.91900 0.92657 0.91726 0.92107 0.91419 0.92861 0.94117 0.92169 0.90101 0.95694 0.90795 0.95225 0.85195 0.86277 0.99801 0.88155 0.93239 0.91822 0.91157 0.90458 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.67 71.98 0.70 -3.68 16 2 C -0.10 -3.13 5.34 30.59 0.16 -2.97 16 3 C -0.07 -2.05 1.94 -10.79 -0.02 -2.07 16 4 C -0.12 -2.67 5.26 30.60 0.16 -2.51 16 5 C -0.15 -3.28 9.50 71.98 0.68 -2.60 16 6 C 0.06 1.68 4.07 86.30 0.35 2.03 16 7 N -0.50 -16.86 3.26 -896.22 -2.92 -19.78 16 8 C 0.06 1.80 4.75 86.30 0.41 2.21 16 9 C -0.02 -0.38 5.82 28.79 0.17 -0.21 16 10 C 0.24 6.83 15.43 89.44 1.38 8.21 16 11 N -0.50 -16.58 18.54 20.01 0.37 -16.21 16 12 C 0.12 4.74 3.87 86.31 0.33 5.08 16 13 C 0.06 2.52 1.36 -52.93 -0.07 2.45 16 14 C -0.50 -24.29 8.72 25.60 0.22 -24.07 16 15 H 0.03 1.54 7.84 -2.92 -0.02 1.52 16 16 C 0.09 4.09 4.49 84.66 0.38 4.47 16 17 N -0.86 -39.87 9.86 21.45 0.21 -39.66 16 18 Si 0.91 39.59 28.92 68.60 1.98 41.57 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 22 C -0.21 -9.19 9.96 30.62 0.30 -8.88 16 23 C -0.21 -8.25 8.04 30.62 0.25 -8.01 16 24 H 0.06 1.57 6.47 -2.39 -0.02 1.55 16 25 H 0.04 1.32 7.14 -2.39 -0.02 1.30 16 26 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 2.33 6.16 -2.39 -0.01 2.32 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 2.34 6.00 -2.39 -0.01 2.32 16 30 H 0.06 1.40 6.37 -2.39 -0.02 1.39 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.15 6.77 -2.39 -0.02 1.14 16 33 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.86 6.21 -2.38 -0.01 1.85 16 36 H 0.02 0.71 6.33 -2.39 -0.02 0.69 16 37 H 0.07 2.58 5.14 -2.39 -0.01 2.57 16 38 H 0.03 0.84 8.05 -2.38 -0.02 0.82 16 39 H 0.13 2.46 6.47 -2.39 -0.02 2.44 16 40 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 41 H -0.02 -0.62 8.08 -2.39 -0.02 -0.64 16 42 H 0.10 4.46 4.71 -2.39 -0.01 4.45 16 43 H 0.26 11.72 7.32 -92.71 -0.68 11.04 16 44 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.08 2.85 8.01 -2.39 -0.02 2.83 16 47 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 Total: -1.00 -51.49 360.48 6.08 -45.41 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.02 Total: 19.21 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 5.41 Total: -30.54 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.34 Total: -75.65 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.98 Total: 41.57 kcal Total: -51.49 6.08 -45.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602781413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.093 kcal (2) G-P(sol) polarization free energy of solvation -51.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds