Wall clock time and date at job start Tue Mar 31 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46859 * 110.99448 * 2 1 4 4 C 1.53055 * 109.60744 * 186.20676 * 3 2 1 5 5 C 1.53220 * 109.21013 * 300.38978 * 4 3 2 6 6 C 1.52574 * 109.20028 * 56.84544 * 5 4 3 7 7 C 1.53823 * 110.16289 * 65.65074 * 6 5 4 8 8 C 1.54485 * 104.88797 * 118.68266 * 7 6 5 9 9 N 1.48609 * 104.60637 * 23.80377 * 8 7 6 10 10 C 1.46896 * 111.00020 * 201.18298 * 9 8 7 11 11 C 1.53000 * 109.47304 * 283.47025 * 10 9 8 12 12 C 1.50705 * 115.55215 * 280.31693 * 11 10 9 13 13 H 1.07995 * 120.00027 * 144.46860 * 12 11 10 14 14 C 1.37885 * 119.99826 * 324.47267 * 12 11 10 15 15 N 1.31516 * 120.00069 * 338.52494 * 14 12 11 16 16 Si 1.86793 * 119.99978 * 158.52423 * 14 12 11 17 17 H 1.48498 * 109.47029 * 59.99799 * 16 14 12 18 18 H 1.48502 * 109.47189 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47136 * 299.99825 * 16 14 12 20 20 C 1.53001 * 117.49872 * 134.61360 * 11 10 9 21 21 C 1.52998 * 117.50059 * 65.99144 * 11 10 9 22 22 C 1.48658 * 104.29918 * 320.79210 * 9 8 7 23 23 C 1.46947 * 111.00494 * 124.14794 * 2 1 3 24 24 H 1.08994 * 109.47451 * 295.84418 * 1 2 3 25 25 H 1.09002 * 109.46372 * 175.85090 * 1 2 3 26 26 H 1.08994 * 109.47510 * 55.85061 * 1 2 3 27 27 H 1.09002 * 109.44829 * 306.24577 * 3 2 1 28 28 H 1.08991 * 109.45173 * 66.16299 * 3 2 1 29 29 H 1.08995 * 109.51685 * 180.46095 * 4 3 2 30 30 H 1.09009 * 109.51078 * 60.30279 * 4 3 2 31 31 H 1.09001 * 109.51211 * 296.92880 * 5 4 3 32 32 H 1.08998 * 109.56351 * 176.79399 * 5 4 3 33 33 H 1.08995 * 110.35734 * 237.53822 * 7 6 5 34 34 H 1.09002 * 110.35126 * 359.82858 * 7 6 5 35 35 H 1.09001 * 110.41311 * 142.58812 * 8 7 6 36 36 H 1.09003 * 110.40920 * 264.90928 * 8 7 6 37 37 H 1.09004 * 109.47411 * 43.47360 * 10 9 8 38 38 H 1.08999 * 109.46804 * 163.47321 * 10 9 8 39 39 H 0.96994 * 120.00296 * 185.50331 * 15 14 12 40 40 H 1.08999 * 117.49852 * 359.97438 * 20 11 10 41 41 H 1.09002 * 117.49963 * 145.02319 * 20 11 10 42 42 H 1.09004 * 117.49591 * 214.98291 * 21 11 10 43 43 H 1.08997 * 117.49396 * 359.97438 * 21 11 10 44 44 H 1.08999 * 110.42912 * 280.28472 * 22 9 8 45 45 H 1.09003 * 110.42784 * 157.80224 * 22 9 8 46 46 H 1.08998 * 109.44855 * 295.13356 * 23 2 1 47 47 H 1.09006 * 109.44743 * 55.05654 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3711 0.0000 4 6 3.5174 1.3371 -0.1559 5 6 4.1257 0.5463 1.0070 6 6 3.5153 -0.8517 1.0368 7 6 3.9246 -1.6359 -0.2217 8 6 4.7147 -2.8530 0.3086 9 7 4.2307 -3.0358 1.7017 10 6 5.2002 -3.7979 2.5000 11 6 5.1088 -5.2807 2.1339 12 6 3.9711 -6.0381 2.7689 13 1 3.4693 -6.8202 2.2186 14 6 3.5707 -5.7324 4.0524 15 7 4.3962 -5.1153 4.8694 16 14 1.8558 -6.1946 4.6309 17 1 1.6837 -7.6669 4.5425 18 1 1.6742 -5.7592 6.0390 19 1 0.8463 -5.5256 3.7714 20 6 6.4208 -6.0347 1.9078 21 6 5.5241 -5.6858 0.7182 22 6 4.0818 -1.6518 2.2233 23 6 1.9957 -0.7700 1.1353 24 1 -0.3634 0.4480 0.9248 25 1 -0.3632 -1.0250 -0.0744 26 1 -0.3634 0.5768 -0.8504 27 1 1.5579 1.9277 -0.8289 28 1 1.7375 1.8588 0.9400 29 1 3.9071 2.3549 -0.1475 30 1 3.7761 0.8550 -1.0987 31 1 3.9119 1.0571 1.9459 32 1 5.2045 0.4698 0.8715 33 1 3.0405 -1.9660 -0.7670 34 1 4.5585 -1.0218 -0.8615 35 1 4.4959 -3.7379 -0.2891 36 1 5.7846 -2.6446 0.3003 37 1 6.2068 -3.4341 2.2936 38 1 4.9780 -3.6709 3.5595 39 1 4.1451 -4.9713 5.7951 40 1 7.3490 -5.4743 2.0194 41 1 6.4612 -7.0788 2.2184 42 1 4.9746 -6.5003 0.2462 43 1 5.8620 -4.8959 0.0475 44 1 5.0504 -1.2522 2.5239 45 1 3.3852 -1.6340 3.0616 46 1 1.7183 -0.2780 2.0675 47 1 1.5762 -1.7760 1.1174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602831912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:50 Heat of formation + Delta-G solvation = 37.130643 kcal Electronic energy + Delta-G solvation = -23429.283404 eV Core-core repulsion = 20419.515446 eV Total energy + Delta-G solvation = -3009.767958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.02383 -37.55063 -35.79479 -33.17985 -32.09548 -31.07287 -29.17161 -26.81462 -26.12880 -25.35095 -23.72824 -22.86568 -21.53406 -20.82932 -20.32339 -18.93133 -18.15944 -16.15366 -15.61111 -15.43874 -15.01166 -14.67155 -14.52915 -14.19175 -13.79548 -13.50520 -13.31500 -13.11251 -12.69710 -12.59288 -12.22847 -12.14053 -11.84623 -11.61110 -11.33135 -11.16793 -11.05762 -10.83346 -10.81957 -10.68088 -10.43289 -10.34997 -10.21653 -9.99484 -9.92040 -9.83514 -9.13818 -8.98802 -8.56890 -8.26299 -7.89454 -7.42020 -5.99258 -3.91053 3.35883 3.40733 3.47720 3.95892 4.47024 4.68011 4.80035 4.90738 4.98847 5.11852 5.14610 5.27274 5.37617 5.43123 5.48183 5.58720 5.64878 5.75418 5.78223 5.81550 5.86326 5.87240 5.92699 6.02941 6.07484 6.13246 6.21511 6.24063 6.34254 6.39486 6.44566 6.57712 6.61570 6.68578 6.77719 6.80167 6.83130 7.03796 7.13339 7.14827 7.17006 7.43290 7.63173 7.88270 8.09476 8.18573 8.59334 8.99778 9.63168 11.05067 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.018193 B = 0.005766 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.684241 B = 4854.583007 C = 5665.121322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.541 5.541 3 C 0.056 3.944 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.056 4.056 7 C -0.102 4.102 8 C 0.029 3.971 9 N -0.484 5.484 10 C 0.075 3.925 11 C 0.072 3.928 12 C -0.475 4.475 13 H 0.057 0.943 14 C 0.078 3.922 15 N -0.878 5.878 16 Si 0.885 3.115 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.274 1.274 20 C -0.208 4.208 21 C -0.214 4.214 22 C 0.044 3.956 23 C 0.075 3.925 24 H 0.021 0.979 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.028 0.972 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.026 0.974 37 H -0.003 1.003 38 H 0.122 0.878 39 H 0.261 0.739 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.028 0.972 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 13.297 -8.089 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.072 4.072 4 C -0.153 4.153 5 C -0.146 4.146 6 C -0.057 4.057 7 C -0.140 4.140 8 C -0.099 4.099 9 N -0.207 5.207 10 C -0.052 4.052 11 C 0.071 3.929 12 C -0.512 4.512 13 H 0.075 0.925 14 C -0.124 4.124 15 N -0.516 5.516 16 Si 0.713 3.287 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.247 4.247 21 C -0.251 4.251 22 C -0.085 4.085 23 C -0.053 4.053 24 H 0.040 0.960 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.015 0.985 38 H 0.139 0.861 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.300 12.895 -8.298 15.685 hybrid contribution -0.240 0.512 1.106 1.242 sum -3.540 13.407 -7.192 15.620 Atomic orbital electron populations 1.22327 0.87579 1.02372 0.99905 1.61927 1.07181 1.13190 1.44174 1.22062 0.95759 0.89517 0.99827 1.21614 0.94397 0.99638 0.99686 1.21602 0.99704 0.95209 0.98119 1.20922 0.94229 0.94256 0.96282 1.22289 1.00112 0.95522 0.96050 1.23353 0.95834 0.97988 0.92758 1.65331 1.44792 1.09837 1.00714 1.22104 0.89188 0.92543 1.01374 1.18787 0.92186 0.91034 0.90890 1.20361 1.14163 1.17868 0.98789 0.92452 1.24844 0.96595 0.94567 0.96390 1.69841 1.34708 1.42671 1.04371 0.86770 0.86057 0.78588 0.77260 1.20519 1.21549 1.19924 1.23014 0.95822 1.01123 1.04719 1.22995 1.06565 1.02764 0.92784 1.23038 0.98923 0.90052 0.96466 1.22061 0.94429 0.98663 0.90129 0.96025 0.91163 0.91765 0.91287 0.95365 0.91966 0.90908 0.92435 0.91869 0.90515 0.92408 0.89911 0.95533 0.98453 0.86057 0.92909 0.92233 0.90600 0.90994 0.91212 0.94685 0.90837 0.95387 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.60 60.07 0.58 0.87 16 2 N -0.54 -6.86 4.52 -243.21 -1.10 -7.96 16 3 C 0.06 0.62 5.45 -3.82 -0.02 0.60 16 4 C -0.12 -1.24 5.87 -26.59 -0.16 -1.40 16 5 C -0.11 -1.35 4.47 -26.84 -0.12 -1.47 16 6 C -0.06 -0.82 0.68 -154.08 -0.11 -0.93 16 7 C -0.10 -1.55 5.58 -25.52 -0.14 -1.69 16 8 C 0.03 0.52 4.86 -2.10 -0.01 0.51 16 9 N -0.48 -10.08 5.32 -230.07 -1.22 -11.31 16 10 C 0.08 1.78 4.62 -3.83 -0.02 1.76 16 11 C 0.07 1.81 1.93 -155.66 -0.30 1.51 16 12 C -0.47 -13.13 8.98 -34.43 -0.31 -13.44 16 13 H 0.06 1.61 7.90 -52.49 -0.41 1.19 16 14 C 0.08 2.14 5.05 -17.82 -0.09 2.05 16 15 N -0.88 -24.45 11.09 55.43 0.61 -23.83 16 16 Si 0.89 21.31 29.59 -169.99 -5.03 16.28 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.21 -4.91 9.88 -26.73 -0.26 -5.17 16 21 C -0.21 -4.77 8.65 -26.73 -0.23 -5.00 16 22 C 0.04 0.79 5.53 -2.37 -0.01 0.78 16 23 C 0.07 1.09 3.84 -4.06 -0.02 1.07 16 24 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.82 6.91 -51.92 -0.36 0.46 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.22 7.55 -51.93 -0.39 0.83 16 34 H 0.06 0.79 6.74 -51.93 -0.35 0.44 16 35 H 0.08 1.57 6.20 -51.93 -0.32 1.25 16 36 H 0.03 0.48 7.69 -51.93 -0.40 0.08 16 37 H 0.00 -0.06 7.53 -51.93 -0.39 -0.45 16 38 H 0.12 3.20 5.31 -51.93 -0.28 2.93 16 39 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 40 H 0.06 1.33 8.09 -51.93 -0.42 0.91 16 41 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 42 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 43 H 0.07 1.42 5.85 -51.93 -0.30 1.12 16 44 H 0.03 0.62 7.69 -51.93 -0.40 0.22 16 45 H 0.07 1.38 7.84 -51.93 -0.41 0.97 16 46 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 1.45 8.13 -51.93 -0.42 1.02 16 LS Contribution 348.05 15.07 5.25 5.25 Total: -1.00 -27.77 348.05 -11.35 -39.12 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.64 Total: 2.42 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -1.22 Total: -19.95 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -1.71 Total: -43.10 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.77 -11.35 -39.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602831912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.248 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds