Wall clock time and date at job start Tue Mar 31 2020 01:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 108.98046 * 2 1 4 4 C 1.54261 * 108.93358 * 241.18672 * 2 1 3 5 5 N 1.44257 * 108.65135 * 160.82900 * 4 2 1 6 6 C 1.46901 * 110.99713 * 219.84707 * 5 4 2 7 7 C 1.53001 * 109.47262 * 295.00290 * 6 5 4 8 8 C 1.50696 * 115.55033 * 278.16791 * 7 6 5 9 9 H 1.08001 * 120.00712 * 121.00757 * 8 7 6 10 10 C 1.37881 * 119.99903 * 301.00988 * 8 7 6 11 11 N 1.31505 * 120.00144 * 154.58540 * 10 8 7 12 12 Si 1.86811 * 119.99657 * 334.58586 * 10 8 7 13 13 H 1.48497 * 109.47015 * 84.63943 * 12 10 8 14 14 H 1.48500 * 109.46692 * 204.64158 * 12 10 8 15 15 H 1.48500 * 109.47108 * 324.64129 * 12 10 8 16 16 C 1.53003 * 117.49831 * 132.45427 * 7 6 5 17 17 C 1.53007 * 60.00290 * 252.51177 * 16 7 6 18 18 C 1.48200 * 114.27375 * 93.39105 * 5 4 2 19 19 C 1.53922 * 112.77490 * 318.13399 * 18 5 4 20 20 N 1.44257 * 112.54739 * 318.38242 * 19 18 5 21 21 C 1.46901 * 111.00307 * 217.14021 * 20 19 18 22 22 C 1.53004 * 117.50016 * 121.11002 * 21 20 19 23 23 C 1.52995 * 117.49878 * 52.45046 * 21 20 19 24 24 C 1.46138 * 108.99147 * 118.84511 * 2 1 3 25 25 H 1.08997 * 109.46938 * 300.00693 * 1 2 3 26 26 H 1.09004 * 109.46723 * 59.99884 * 1 2 3 27 27 H 1.08989 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.60163 * 280.57703 * 4 2 1 29 29 H 1.08999 * 109.60133 * 41.07775 * 4 2 1 30 30 H 1.09007 * 109.46848 * 54.99951 * 6 5 4 31 31 H 1.08992 * 109.47111 * 175.00315 * 6 5 4 32 32 H 0.97008 * 120.00113 * 179.97438 * 11 10 8 33 33 H 1.08996 * 117.49964 * 359.97438 * 16 7 6 34 34 H 1.09004 * 117.49434 * 145.01863 * 16 7 6 35 35 H 1.08996 * 117.49660 * 252.51905 * 17 16 7 36 36 H 1.08998 * 117.49511 * 107.48675 * 17 16 7 37 37 H 1.08997 * 108.82066 * 197.28181 * 18 5 4 38 38 H 1.09008 * 108.73354 * 78.92314 * 18 5 4 39 39 H 1.09006 * 108.86910 * 197.59426 * 19 18 5 40 40 H 1.09002 * 108.79084 * 79.11751 * 19 18 5 41 41 H 1.08998 * 115.54862 * 266.77706 * 21 20 19 42 42 H 1.08997 * 117.49884 * 0.02562 * 22 21 20 43 43 H 1.09006 * 117.49603 * 145.01833 * 22 21 20 44 44 H 1.08996 * 117.50010 * 214.98000 * 23 21 20 45 45 H 1.09005 * 117.49899 * 359.97438 * 23 21 20 46 46 H 1.09004 * 108.93844 * 302.10005 * 24 2 1 47 47 H 1.08994 * 108.93640 * 60.70672 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8846 1.0307 0.0000 4 6 2.0306 -0.7032 -1.2785 5 7 3.4014 -0.3184 -1.5101 6 6 3.6515 -0.0973 -2.9407 7 6 3.4876 -1.4171 -3.6971 8 6 4.6811 -2.3366 -3.6661 9 1 4.5854 -3.3322 -3.2586 10 6 5.8954 -1.9069 -4.1579 11 7 7.0114 -2.4422 -3.7135 12 14 5.9552 -0.5643 -5.4554 13 1 5.9047 0.7648 -4.7951 14 1 7.2148 -0.6833 -6.2330 15 1 4.7938 -0.7073 -6.3696 16 6 2.6408 -1.4006 -4.9713 17 6 2.0996 -2.0610 -3.7017 18 6 4.4010 -1.2484 -0.9337 19 6 4.0195 -1.7341 0.4762 20 7 3.4840 -0.6773 1.2992 21 6 3.9266 -0.8195 2.6927 22 6 4.7132 0.3407 3.3061 23 6 5.4286 -0.9637 2.9456 24 6 2.0056 -0.6667 1.2104 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.9709 -1.7838 -1.1487 29 1 1.4171 -0.3998 -2.1268 30 1 2.9394 0.6329 -3.3254 31 1 4.6659 0.2769 -3.0786 32 1 7.8657 -2.1401 -4.0598 33 1 2.2001 -0.4496 -5.2705 34 1 2.9471 -2.0548 -5.7876 35 1 2.0499 -3.1497 -3.6827 36 1 1.3033 -1.5443 -3.1659 37 1 5.3645 -0.7413 -0.8823 38 1 4.4941 -2.1134 -1.5905 39 1 4.9066 -2.1427 0.9603 40 1 3.2729 -2.5231 0.3856 41 1 3.2510 -1.3708 3.3466 42 1 4.9019 1.2097 2.6757 43 1 4.5553 0.5524 4.3636 44 1 5.7412 -1.6095 3.7661 45 1 6.0884 -0.9534 2.0779 46 1 1.6027 -0.1490 2.0809 47 1 1.6438 -1.6948 1.2134 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602832537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:19 Heat of formation + Delta-G solvation = 79.774943 kcal Electronic energy + Delta-G solvation = -23756.448226 eV Core-core repulsion = 20748.529463 eV Total energy + Delta-G solvation = -3007.918762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.57950 -37.81862 -36.04618 -33.62892 -32.95969 -32.21136 -28.33092 -27.17687 -25.56687 -25.01079 -23.47544 -22.10276 -21.62536 -20.88268 -19.80233 -19.22313 -18.75529 -16.51819 -16.28878 -15.84638 -14.94990 -14.71087 -14.32306 -14.17446 -13.85531 -13.45096 -13.18991 -12.83847 -12.56688 -12.49970 -12.38088 -12.12776 -11.75754 -11.37253 -11.34309 -11.20146 -11.04171 -10.83848 -10.56790 -10.41218 -10.29723 -10.24362 -10.14568 -10.04424 -9.89593 -9.84139 -9.54567 -9.05600 -8.63757 -8.24464 -7.89852 -7.11801 -6.21959 -4.03813 3.30582 3.40558 3.49603 3.91575 4.02019 4.43637 4.63840 4.95752 5.05684 5.11645 5.21580 5.22888 5.29837 5.32988 5.48365 5.57074 5.68177 5.77084 5.79622 5.83513 5.89212 5.92438 6.01351 6.05940 6.13427 6.17198 6.20669 6.23536 6.30313 6.33874 6.35603 6.39072 6.46448 6.60599 6.76793 6.78195 6.86683 7.00374 7.15130 7.22522 7.29864 7.50359 7.56224 7.75962 8.09146 8.25079 8.47247 8.86110 9.49442 10.88858 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.006670 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.654388 B = 4196.802722 C = 5256.478285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.082 0.918 4 C 0.076 3.924 5 N -0.531 5.531 6 C 0.092 3.908 7 C -0.022 4.022 8 C -0.494 4.494 9 H 0.073 0.927 10 C 0.091 3.909 11 N -0.874 5.874 12 Si 0.859 3.141 13 H -0.273 1.273 14 H -0.294 1.294 15 H -0.258 1.258 16 C -0.204 4.204 17 C -0.195 4.195 18 C 0.060 3.940 19 C 0.055 3.945 20 N -0.491 5.491 21 C 0.007 3.993 22 C -0.165 4.165 23 C -0.180 4.180 24 C 0.075 3.925 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.265 0.735 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 4.091 10.463 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.101 0.899 4 C -0.053 4.053 5 N -0.253 5.253 6 C -0.036 4.036 7 C -0.025 4.025 8 C -0.530 4.530 9 H 0.091 0.909 10 C -0.114 4.114 11 N -0.509 5.509 12 Si 0.685 3.315 13 H -0.199 1.199 14 H -0.220 1.220 15 H -0.183 1.183 16 C -0.242 4.242 17 C -0.232 4.232 18 C -0.067 4.067 19 C -0.073 4.073 20 N -0.214 5.214 21 C -0.102 4.102 22 C -0.203 4.203 23 C -0.217 4.217 24 C -0.052 4.052 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.121 0.879 46 H 0.078 0.922 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.119 4.929 10.526 14.178 hybrid contribution -0.266 -0.902 -0.913 1.311 sum -8.384 4.027 9.613 13.376 Atomic orbital electron populations 1.21819 0.95717 1.01299 1.01359 1.20232 0.93712 1.01962 0.95222 0.89946 1.21951 0.90628 0.97105 0.95623 1.60725 1.01947 1.49167 1.13443 1.21929 1.00712 0.94692 0.86285 1.20246 0.90770 0.96084 0.95360 1.20033 0.90923 1.00188 1.41878 0.90937 1.24805 0.95027 0.95856 0.95756 1.70070 0.97720 1.43673 1.39388 0.87146 0.77556 0.82962 0.83786 1.19885 1.22036 1.18258 1.23085 1.07656 1.00565 0.92911 1.23083 0.98654 0.99019 1.02487 1.22756 0.93920 0.97775 0.92234 1.22147 0.99018 0.91336 0.94839 1.61345 1.08348 1.46806 1.04886 1.22494 0.93828 1.02587 0.91298 1.23050 1.03760 0.93301 1.00164 1.23095 0.94512 1.00700 1.03397 1.21035 0.87112 0.98696 0.98350 0.93134 0.92585 0.93173 0.94688 0.91598 0.93475 0.91083 0.92535 0.91633 0.90059 0.90500 0.90007 0.92098 0.88455 0.91280 0.95392 0.89918 0.88170 0.89461 0.89127 0.87909 0.92160 0.95496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.01 37.16 0.33 -1.34 16 2 C -0.09 -1.32 2.60 -93.21 -0.24 -1.56 16 3 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 4 C 0.08 1.29 2.84 -4.58 -0.01 1.28 16 5 N -0.53 -10.39 4.32 -234.25 -1.01 -11.40 16 6 C 0.09 1.96 4.86 -3.82 -0.02 1.94 16 7 C -0.02 -0.50 0.58 -155.65 -0.09 -0.59 16 8 C -0.49 -12.96 6.55 -34.44 -0.23 -13.19 16 9 H 0.07 2.10 7.91 -52.49 -0.42 1.68 16 10 C 0.09 2.46 5.20 -17.82 -0.09 2.37 16 11 N -0.87 -25.03 13.96 55.43 0.77 -24.26 16 12 Si 0.86 20.89 25.81 -169.99 -4.39 16.50 16 13 H -0.27 -6.55 6.74 56.52 0.38 -6.17 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.26 -6.13 6.36 56.52 0.36 -5.77 16 16 C -0.20 -4.29 8.23 -26.73 -0.22 -4.51 16 17 C -0.20 -3.91 8.43 -26.72 -0.23 -4.14 16 18 C 0.06 1.24 5.47 -2.63 -0.01 1.22 16 19 C 0.05 0.95 4.96 -4.76 -0.02 0.93 16 20 N -0.49 -7.60 4.56 -231.22 -1.05 -8.66 16 21 C 0.01 0.09 5.20 -67.71 -0.35 -0.26 16 22 C -0.16 -1.98 10.46 -26.69 -0.28 -2.26 16 23 C -0.18 -2.25 9.25 -26.70 -0.25 -2.49 16 24 C 0.08 1.06 4.13 -6.42 -0.03 1.03 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 27 H 0.05 0.56 8.14 -51.94 -0.42 0.14 16 28 H 0.03 0.63 6.39 -51.93 -0.33 0.30 16 29 H 0.07 1.11 5.18 -51.93 -0.27 0.84 16 30 H 0.05 0.94 7.72 -51.93 -0.40 0.54 16 31 H 0.07 1.68 5.93 -51.93 -0.31 1.37 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 34 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 36 H 0.08 1.47 4.95 -51.93 -0.26 1.21 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.10 2.32 4.59 -51.92 -0.24 2.08 16 39 H 0.07 1.16 6.00 -51.93 -0.31 0.85 16 40 H 0.03 0.49 6.54 -51.93 -0.34 0.15 16 41 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 42 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.10 1.46 7.41 -51.93 -0.38 1.07 16 46 H 0.06 0.77 7.85 -51.93 -0.41 0.36 16 47 H 0.03 0.38 7.38 -51.93 -0.38 0.00 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -26.90 340.21 -10.59 -37.49 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.30 Total: 6.77 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.74 Total: -21.57 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -1.29 Total: -44.32 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.39 Total: 16.50 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.90 -10.59 -37.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602832537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.267 kcal (2) G-P(sol) polarization free energy of solvation -26.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds