Wall clock time and date at job start Tue Mar 31 2020 01:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 108.98046 * 2 1 4 4 C 1.54261 * 108.93358 * 241.18672 * 2 1 3 5 5 N 1.44257 * 108.65135 * 160.82900 * 4 2 1 6 6 C 1.46901 * 110.99713 * 219.84707 * 5 4 2 7 7 C 1.53001 * 109.47262 * 295.00290 * 6 5 4 8 8 C 1.50696 * 115.55033 * 278.16791 * 7 6 5 9 9 H 1.08001 * 120.00712 * 121.00757 * 8 7 6 10 10 C 1.37881 * 119.99903 * 301.00988 * 8 7 6 11 11 N 1.31505 * 120.00144 * 154.58540 * 10 8 7 12 12 Si 1.86811 * 119.99657 * 334.58586 * 10 8 7 13 13 H 1.48497 * 109.47015 * 84.63943 * 12 10 8 14 14 H 1.48500 * 109.46692 * 204.64158 * 12 10 8 15 15 H 1.48500 * 109.47108 * 324.64129 * 12 10 8 16 16 C 1.53003 * 117.49831 * 132.45427 * 7 6 5 17 17 C 1.53007 * 60.00290 * 252.51177 * 16 7 6 18 18 C 1.48200 * 114.27375 * 93.39105 * 5 4 2 19 19 C 1.53922 * 112.77490 * 318.13399 * 18 5 4 20 20 N 1.44257 * 112.54739 * 318.38242 * 19 18 5 21 21 C 1.46901 * 111.00307 * 217.14021 * 20 19 18 22 22 C 1.53004 * 117.50016 * 121.11002 * 21 20 19 23 23 C 1.52995 * 117.49878 * 52.45046 * 21 20 19 24 24 C 1.46138 * 108.99147 * 118.84511 * 2 1 3 25 25 H 1.08997 * 109.46938 * 300.00693 * 1 2 3 26 26 H 1.09004 * 109.46723 * 59.99884 * 1 2 3 27 27 H 1.08989 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.60163 * 280.57703 * 4 2 1 29 29 H 1.08999 * 109.60133 * 41.07775 * 4 2 1 30 30 H 1.09007 * 109.46848 * 54.99951 * 6 5 4 31 31 H 1.08992 * 109.47111 * 175.00315 * 6 5 4 32 32 H 0.97008 * 120.00113 * 179.97438 * 11 10 8 33 33 H 1.08996 * 117.49964 * 359.97438 * 16 7 6 34 34 H 1.09004 * 117.49434 * 145.01863 * 16 7 6 35 35 H 1.08996 * 117.49660 * 252.51905 * 17 16 7 36 36 H 1.08998 * 117.49511 * 107.48675 * 17 16 7 37 37 H 1.08997 * 108.82066 * 197.28181 * 18 5 4 38 38 H 1.09008 * 108.73354 * 78.92314 * 18 5 4 39 39 H 1.09006 * 108.86910 * 197.59426 * 19 18 5 40 40 H 1.09002 * 108.79084 * 79.11751 * 19 18 5 41 41 H 1.08998 * 115.54862 * 266.77706 * 21 20 19 42 42 H 1.08997 * 117.49884 * 0.02562 * 22 21 20 43 43 H 1.09006 * 117.49603 * 145.01833 * 22 21 20 44 44 H 1.08996 * 117.50010 * 214.98000 * 23 21 20 45 45 H 1.09005 * 117.49899 * 359.97438 * 23 21 20 46 46 H 1.09004 * 108.93844 * 302.10005 * 24 2 1 47 47 H 1.08994 * 108.93640 * 60.70672 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8846 1.0307 0.0000 4 6 2.0306 -0.7032 -1.2785 5 7 3.4014 -0.3184 -1.5101 6 6 3.6515 -0.0973 -2.9407 7 6 3.4876 -1.4171 -3.6971 8 6 4.6811 -2.3366 -3.6661 9 1 4.5854 -3.3322 -3.2586 10 6 5.8954 -1.9069 -4.1579 11 7 7.0114 -2.4422 -3.7135 12 14 5.9552 -0.5643 -5.4554 13 1 5.9047 0.7648 -4.7951 14 1 7.2148 -0.6833 -6.2330 15 1 4.7938 -0.7073 -6.3696 16 6 2.6408 -1.4006 -4.9713 17 6 2.0996 -2.0610 -3.7017 18 6 4.4010 -1.2484 -0.9337 19 6 4.0195 -1.7341 0.4762 20 7 3.4840 -0.6773 1.2992 21 6 3.9266 -0.8195 2.6927 22 6 4.7132 0.3407 3.3061 23 6 5.4286 -0.9637 2.9456 24 6 2.0056 -0.6667 1.2104 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.9709 -1.7838 -1.1487 29 1 1.4171 -0.3998 -2.1268 30 1 2.9394 0.6329 -3.3254 31 1 4.6659 0.2769 -3.0786 32 1 7.8657 -2.1401 -4.0598 33 1 2.2001 -0.4496 -5.2705 34 1 2.9471 -2.0548 -5.7876 35 1 2.0499 -3.1497 -3.6827 36 1 1.3033 -1.5443 -3.1659 37 1 5.3645 -0.7413 -0.8823 38 1 4.4941 -2.1134 -1.5905 39 1 4.9066 -2.1427 0.9603 40 1 3.2729 -2.5231 0.3856 41 1 3.2510 -1.3708 3.3466 42 1 4.9019 1.2097 2.6757 43 1 4.5553 0.5524 4.3636 44 1 5.7412 -1.6095 3.7661 45 1 6.0884 -0.9534 2.0779 46 1 1.6027 -0.1490 2.0809 47 1 1.6438 -1.6948 1.2134 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602832537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:19 Heat of formation + Delta-G solvation = 63.165995 kcal Electronic energy + Delta-G solvation = -23757.168444 eV Core-core repulsion = 20748.529463 eV Total energy + Delta-G solvation = -3008.638980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.96775 -39.25279 -37.31747 -35.10009 -34.43528 -34.04933 -29.76835 -28.82171 -27.12529 -26.46064 -24.88689 -23.31451 -23.10405 -22.13542 -21.08836 -20.85579 -20.31862 -18.36933 -17.60214 -17.14170 -16.67788 -16.08040 -15.85665 -15.62899 -15.24014 -14.92137 -14.89777 -14.32731 -14.09785 -13.96898 -13.62006 -13.48187 -13.06930 -13.02515 -12.81960 -12.47546 -12.35486 -12.26879 -12.22303 -12.05283 -11.82240 -11.69294 -11.64431 -11.39569 -11.29923 -11.19605 -10.97085 -10.83508 -10.47041 -10.21617 -9.12602 -8.75513 -8.33669 -6.15628 1.34933 1.40124 1.52030 2.39644 2.76108 2.89734 2.98233 3.22781 3.49111 3.97754 4.04825 4.05745 4.11265 4.15118 4.18748 4.26002 4.33228 4.40908 4.47870 4.53241 4.62667 4.67592 4.75286 4.78452 4.81102 4.83909 4.88906 4.91838 4.97375 5.06197 5.07277 5.11960 5.15240 5.23717 5.34339 5.36474 5.42503 5.44520 5.51220 5.57608 5.60552 5.75325 6.20643 6.30888 6.35229 6.47851 6.70600 6.77245 7.37377 8.80966 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.006670 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.654388 B = 4196.802722 C = 5256.478285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 H 0.070 0.930 4 C 0.076 3.924 5 N -0.528 5.528 6 C 0.097 3.903 7 C -0.045 4.045 8 C -0.484 4.484 9 H 0.028 0.972 10 C 0.042 3.958 11 N -0.921 5.921 12 Si 0.912 3.088 13 H -0.267 1.267 14 H -0.298 1.298 15 H -0.242 1.242 16 C -0.196 4.196 17 C -0.175 4.175 18 C 0.073 3.927 19 C 0.070 3.930 20 N -0.505 5.505 21 C -0.003 4.003 22 C -0.151 4.151 23 C -0.184 4.184 24 C 0.074 3.926 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.022 0.978 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.028 0.972 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 5.787 11.509 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.052 4.052 5 N -0.250 5.250 6 C -0.032 4.032 7 C -0.047 4.047 8 C -0.520 4.520 9 H 0.046 0.954 10 C -0.158 4.158 11 N -0.558 5.558 12 Si 0.737 3.263 13 H -0.192 1.192 14 H -0.225 1.225 15 H -0.165 1.165 16 C -0.234 4.234 17 C -0.212 4.212 18 C -0.055 4.055 19 C -0.059 4.059 20 N -0.228 5.228 21 C -0.112 4.112 22 C -0.189 4.189 23 C -0.221 4.221 24 C -0.053 4.053 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.021 6.632 11.573 17.303 hybrid contribution 0.621 -1.489 -1.165 1.990 sum -10.399 5.143 10.408 15.586 Atomic orbital electron populations 1.21762 0.93014 1.02047 1.02653 1.20175 0.95840 1.00618 0.93761 0.91160 1.22042 0.88904 0.96708 0.97548 1.60773 1.03150 1.48735 1.12376 1.21826 0.99740 0.94337 0.87254 1.20119 0.90530 0.96441 0.97644 1.20088 0.92664 0.98969 1.40303 0.95357 1.25467 0.94700 0.98228 0.97443 1.70183 0.98265 1.46155 1.41190 0.86287 0.77752 0.80711 0.81540 1.19209 1.22499 1.16544 1.23098 1.06516 1.01646 0.92131 1.23108 0.97606 0.98692 1.01798 1.22436 0.93350 0.95776 0.93935 1.21843 0.99027 0.91644 0.93338 1.61254 1.09533 1.45828 1.06200 1.22642 0.94356 1.03958 0.90203 1.23075 1.02312 0.92159 1.01322 1.23095 0.93851 1.01942 1.03239 1.21104 0.86017 0.99044 0.99099 0.91245 0.91996 0.92666 0.95948 0.90775 0.91100 0.93970 0.92710 0.88876 0.91263 0.91501 0.87150 0.95304 0.92337 0.91502 0.95637 0.87996 0.89740 0.86623 0.86975 0.90472 0.89962 0.95360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.01 71.98 0.65 -1.99 16 2 C -0.08 -2.21 2.60 -12.47 -0.03 -2.24 16 3 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 4 C 0.08 2.46 2.84 87.22 0.25 2.71 16 5 N -0.53 -20.62 4.32 -895.04 -3.87 -24.49 16 6 C 0.10 4.08 4.86 86.30 0.42 4.50 16 7 C -0.04 -2.01 0.58 -52.92 -0.03 -2.04 16 8 C -0.48 -26.48 6.55 25.60 0.17 -26.31 16 9 H 0.03 1.76 7.91 -2.91 -0.02 1.74 16 10 C 0.04 2.38 5.20 84.66 0.44 2.82 16 11 N -0.92 -55.65 13.96 21.45 0.30 -55.36 16 12 Si 0.91 43.76 25.81 68.60 1.77 45.53 16 13 H -0.27 -12.45 6.74 99.48 0.67 -11.78 16 14 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 15 H -0.24 -10.88 6.36 99.48 0.63 -10.24 16 16 C -0.20 -7.81 8.23 30.60 0.25 -7.56 16 17 C -0.18 -6.74 8.43 30.60 0.26 -6.48 16 18 C 0.07 3.15 5.47 86.36 0.47 3.62 16 19 C 0.07 2.49 4.96 87.11 0.43 2.92 16 20 N -0.50 -15.12 4.56 -885.46 -4.04 -19.16 16 21 C 0.00 -0.08 5.20 44.91 0.23 0.16 16 22 C -0.15 -3.32 10.46 30.62 0.32 -3.00 16 23 C -0.18 -4.43 9.25 30.62 0.28 -4.14 16 24 C 0.07 1.90 4.13 83.96 0.35 2.25 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.14 8.11 -2.39 -0.02 1.12 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.02 0.78 6.39 -2.39 -0.02 0.77 16 29 H 0.07 2.26 5.18 -2.39 -0.01 2.25 16 30 H 0.07 2.64 7.72 -2.38 -0.02 2.62 16 31 H 0.04 2.01 5.93 -2.39 -0.01 1.99 16 32 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 33 H 0.09 3.24 8.07 -2.39 -0.02 3.22 16 34 H 0.07 2.94 8.09 -2.39 -0.02 2.92 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.11 3.61 4.95 -2.39 -0.01 3.60 16 37 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 2.99 4.59 -2.38 -0.01 2.98 16 39 H 0.07 2.35 6.00 -2.38 -0.01 2.33 16 40 H 0.03 0.90 6.54 -2.39 -0.02 0.89 16 41 H 0.10 2.16 8.04 -2.39 -0.02 2.14 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.08 2.26 7.41 -2.38 -0.02 2.25 16 46 H 0.08 1.78 7.85 -2.39 -0.02 1.77 16 47 H 0.03 0.73 7.38 -2.39 -0.02 0.71 16 Total: -1.00 -61.37 340.21 -0.56 -61.92 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.82 Total: 26.33 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 4.46 Total: -34.79 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -7.60 Total: -99.00 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.77 Total: 45.53 kcal Total: -61.37 -0.56 -61.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602832537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.091 kcal (2) G-P(sol) polarization free energy of solvation -61.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds