Wall clock time and date at job start Tue Mar 31 2020 00:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00047 * 2 1 4 4 C 1.53000 * 109.47420 * 124.99891 * 3 2 1 5 5 C 1.52999 * 109.47277 * 176.73649 * 4 3 2 6 6 H 1.09004 * 109.47049 * 54.64461 * 5 4 3 7 7 N 1.46896 * 109.47149 * 294.64684 * 5 4 3 8 8 C 1.46898 * 111.00152 * 106.32800 * 7 5 4 9 9 C 1.53074 * 109.45671 * 85.11050 * 8 7 5 10 10 C 1.53190 * 109.29617 * 181.24178 * 9 8 7 11 11 N 1.46927 * 108.89325 * 305.58242 * 10 9 8 12 12 C 1.36942 * 120.62810 * 233.51166 * 11 10 9 13 13 H 1.08005 * 119.99654 * 149.66113 * 12 11 10 14 14 C 1.38807 * 119.99998 * 329.66580 * 12 11 10 15 15 N 1.31622 * 120.00139 * 343.57749 * 14 12 11 16 16 Si 1.86805 * 119.99752 * 163.58373 * 14 12 11 17 17 H 1.48497 * 109.47286 * 90.00079 * 16 14 12 18 18 H 1.48509 * 109.46824 * 209.99562 * 16 14 12 19 19 H 1.48497 * 109.47345 * 329.99390 * 16 14 12 20 20 C 1.46921 * 118.74326 * 53.53385 * 11 10 9 21 21 C 1.53039 * 109.45719 * 205.32516 * 8 7 5 22 22 C 1.53002 * 109.47397 * 174.64215 * 5 4 3 23 23 C 1.52998 * 117.50050 * 251.80796 * 22 5 4 24 24 C 1.52998 * 117.49994 * 183.14858 * 22 5 4 25 25 H 1.07998 * 120.00047 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00019 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00221 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46965 * 5.00154 * 3 2 1 29 29 H 1.09001 * 109.47291 * 244.99844 * 3 2 1 30 30 H 1.08996 * 109.47146 * 56.73926 * 4 3 2 31 31 H 1.09000 * 109.47217 * 296.73918 * 4 3 2 32 32 H 1.00900 * 110.99907 * 342.36651 * 7 5 4 33 33 H 1.08997 * 109.45779 * 325.29249 * 8 7 5 34 34 H 1.09000 * 109.38575 * 61.36922 * 9 8 7 35 35 H 1.08996 * 109.62382 * 301.25985 * 9 8 7 36 36 H 1.08999 * 109.58603 * 185.72024 * 10 9 8 37 37 H 1.09003 * 109.58558 * 65.43754 * 10 9 8 38 38 H 0.97000 * 119.99740 * 180.02562 * 15 14 12 39 39 H 1.09009 * 109.58363 * 66.18026 * 20 11 10 40 40 H 1.09000 * 109.59016 * 186.46363 * 20 11 10 41 41 H 1.08999 * 109.50217 * 58.66180 * 21 8 7 42 42 H 1.08996 * 109.49917 * 298.55735 * 21 8 7 43 43 H 1.09004 * 115.54633 * 37.47179 * 22 5 4 44 44 H 1.09002 * 117.49664 * 0.02562 * 23 22 5 45 45 H 1.09002 * 117.49958 * 145.01755 * 23 22 5 46 46 H 1.09004 * 117.49512 * 214.97707 * 24 22 5 47 47 H 1.08991 * 117.49953 * 359.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8575 2.6224 1.1351 6 1 3.1863 3.4805 1.0975 7 7 4.7112 2.6158 -0.0603 8 6 4.2003 3.5447 -1.0772 9 6 4.7275 4.9532 -0.7920 10 6 4.1678 5.9243 -1.8362 11 7 4.4881 5.4172 -3.1775 12 6 5.1323 6.2115 -4.0882 13 1 5.7828 5.7674 -4.8273 14 6 4.9494 7.5872 -4.0613 15 7 3.9361 8.1036 -3.3987 16 14 6.1413 8.7056 -4.9658 17 1 5.6627 8.9188 -6.3553 18 1 6.2232 10.0121 -4.2645 19 1 7.4855 8.0752 -4.9964 20 6 4.1037 4.0419 -3.5233 21 6 4.6668 3.0910 -2.4624 22 6 4.7330 2.7143 2.3866 23 6 4.3481 3.7516 3.4434 24 6 5.5811 3.9753 2.5644 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9352 0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 3.7029 0.4738 1.1233 31 1 2.4733 1.2940 2.1149 32 1 4.8015 1.6833 -0.4350 33 1 3.1108 3.5539 -1.0460 34 1 5.8162 4.9497 -0.8452 35 1 4.4124 5.2675 0.2029 36 1 4.6187 6.9072 -1.6998 37 1 3.0863 5.9994 -1.7226 38 1 3.8082 9.0649 -3.3803 39 1 3.0168 3.9612 -3.5464 40 1 4.5101 3.7838 -4.5011 41 1 4.3087 2.0794 -2.6537 42 1 5.7559 3.1055 -2.5023 43 1 5.1534 1.7714 2.7364 44 1 3.4709 4.3682 3.2473 45 1 4.5157 3.4913 4.4885 46 1 6.5594 3.8620 3.0316 47 1 5.5157 4.7391 1.7897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610970003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:11 Heat of formation + Delta-G solvation = 49.895795 kcal Electronic energy + Delta-G solvation = -22696.966560 eV Core-core repulsion = 19687.752140 eV Total energy + Delta-G solvation = -3009.214419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.07439 -37.09103 -35.82159 -34.30331 -32.38733 -30.73368 -29.84019 -28.65050 -26.14834 -24.26235 -22.48703 -22.07210 -21.90943 -21.23408 -20.30820 -19.55955 -18.94422 -16.67895 -16.00918 -15.34772 -15.17705 -14.83664 -14.72032 -14.09965 -13.93875 -13.52509 -13.43638 -13.22216 -12.89549 -12.53982 -12.34684 -12.13795 -11.73739 -11.50845 -11.40520 -11.12964 -11.03862 -10.98182 -10.84841 -10.68671 -10.66273 -10.21835 -10.15354 -10.08126 -9.93529 -9.87495 -9.50295 -9.42674 -9.38428 -8.44259 -8.01082 -6.59298 -5.75339 -3.19123 2.15269 3.39781 3.46791 3.49746 3.87875 4.46132 4.53146 4.63395 4.87401 4.92116 5.07092 5.15513 5.23019 5.25496 5.37771 5.45180 5.47075 5.53878 5.60056 5.65079 5.74272 5.76962 5.78079 5.90967 5.93465 5.97235 6.11363 6.14534 6.19686 6.27885 6.37301 6.43707 6.47655 6.52311 6.64260 6.68092 6.72370 6.81551 6.85192 7.04267 7.43457 7.49003 7.69483 7.76549 7.84583 8.50882 9.26070 9.89150 10.47486 11.33352 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.004570 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.674358 B = 6125.645740 C = 7104.142477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.101 4.101 4 C -0.131 4.131 5 C 0.117 3.883 6 H 0.071 0.929 7 N -0.679 5.679 8 C 0.098 3.902 9 C -0.123 4.123 10 C 0.173 3.827 11 N -0.590 5.590 12 C -0.253 4.253 13 H 0.063 0.937 14 C 0.005 3.995 15 N -0.902 5.902 16 Si 0.900 3.100 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.148 3.852 21 C -0.133 4.133 22 C -0.134 4.134 23 C -0.189 4.189 24 C -0.162 4.162 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.334 0.666 33 H 0.036 0.964 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.014 0.986 38 H 0.253 0.747 39 H 0.014 0.986 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -14.040 11.146 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.166 4.166 3 C -0.138 4.138 4 C -0.170 4.170 5 C 0.006 3.994 6 H 0.089 0.911 7 N -0.309 5.309 8 C -0.011 4.011 9 C -0.163 4.163 10 C 0.046 3.954 11 N -0.313 5.313 12 C -0.383 4.383 13 H 0.081 0.919 14 C -0.194 4.194 15 N -0.547 5.547 16 Si 0.730 3.270 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.204 1.204 20 C 0.021 3.979 21 C -0.173 4.173 22 C -0.153 4.153 23 C -0.227 4.227 24 C -0.199 4.199 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.080 -13.399 11.394 17.711 hybrid contribution -0.270 0.075 -0.705 0.759 sum -2.350 -13.324 10.689 17.242 Atomic orbital electron populations 1.23843 0.96031 1.01722 1.02024 1.22969 0.96021 0.98452 0.99192 1.20874 0.98388 0.95307 0.99205 1.22114 0.97925 0.98536 0.98412 1.21162 0.91654 0.96741 0.89799 0.91124 1.60588 1.51576 1.12103 1.06640 1.21542 0.96100 0.93394 0.90050 1.22237 1.01176 0.94270 0.98645 1.20737 0.96319 0.96047 0.82258 1.44004 1.67727 1.09279 1.10276 1.19146 1.19429 0.88297 1.11405 0.91928 1.25079 0.96927 0.97828 0.99571 1.70037 1.27855 1.11110 1.45652 0.86338 0.81185 0.80277 0.79217 1.21418 1.21573 1.20435 1.20854 0.95821 0.86003 0.95217 1.22207 1.01730 0.97899 0.95448 1.22168 1.02780 0.93998 0.96361 1.23004 1.00127 1.03635 0.95919 1.22849 0.94404 1.00460 1.02164 0.88738 0.88605 0.87598 0.91486 0.90690 0.91591 0.91447 0.84775 0.94644 0.92180 0.93771 0.89965 0.96841 0.93704 0.96835 0.92793 0.93669 0.91564 0.88648 0.89193 0.89440 0.89601 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 14.32 29.02 0.42 -1.48 16 2 C -0.15 -1.47 9.52 -36.02 -0.34 -1.81 16 3 C -0.10 -1.09 4.87 -27.88 -0.14 -1.23 16 4 C -0.13 -1.35 4.48 -26.73 -0.12 -1.47 16 5 C 0.12 1.42 2.11 -67.71 -0.14 1.28 16 6 H 0.07 0.99 7.00 -51.93 -0.36 0.62 16 7 N -0.68 -9.31 5.81 -99.68 -0.58 -9.89 16 8 C 0.10 1.62 1.50 -67.65 -0.10 1.52 16 9 C -0.12 -2.40 5.27 -26.59 -0.14 -2.54 16 10 C 0.17 4.16 5.28 -3.71 -0.02 4.14 16 11 N -0.59 -14.94 2.98 -172.31 -0.51 -15.45 16 12 C -0.25 -7.04 9.56 -15.06 -0.14 -7.18 16 13 H 0.06 1.71 7.88 -52.48 -0.41 1.30 16 14 C 0.00 0.13 4.91 -17.43 -0.09 0.05 16 15 N -0.90 -26.48 11.33 55.49 0.63 -25.85 16 16 Si 0.90 21.88 29.58 -169.99 -5.03 16.85 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 21 C -0.13 -2.30 5.36 -26.61 -0.14 -2.44 16 22 C -0.13 -1.56 5.32 -90.62 -0.48 -2.05 16 23 C -0.19 -2.10 10.18 -26.70 -0.27 -2.37 16 24 C -0.16 -2.03 10.18 -26.70 -0.27 -2.31 16 25 H 0.09 0.77 8.06 -52.49 -0.42 0.34 16 26 H 0.10 0.92 7.84 -52.48 -0.41 0.51 16 27 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 29 H 0.07 0.89 6.49 -51.93 -0.34 0.56 16 30 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.33 4.22 7.34 -39.29 -0.29 3.93 16 33 H 0.04 0.61 6.70 -51.93 -0.35 0.27 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.04 0.81 6.52 -51.93 -0.34 0.47 16 36 H 0.08 2.23 6.22 -51.93 -0.32 1.90 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 40 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 41 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.10 1.05 8.13 -51.93 -0.42 0.62 16 44 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.10 1.49 6.43 -51.93 -0.33 1.15 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -28.67 362.33 -10.64 -39.30 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.59 Total: 4.35 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.01 Total: -14.78 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.46 Total: -51.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.67 -10.64 -39.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610970003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.198 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds