Wall clock time and date at job start Tue Mar 31 2020 00:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47194 * 2 1 4 4 C 1.53001 * 109.47194 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47101 * 180.02562 * 4 3 2 6 6 H 1.08998 * 110.06121 * 55.14096 * 5 4 3 7 7 C 1.54262 * 110.03336 * 293.72085 * 5 4 3 8 8 C 1.54889 * 104.19974 * 217.10481 * 7 5 4 9 9 C 1.54899 * 102.74599 * 37.94468 * 8 7 5 10 10 C 1.53872 * 110.03321 * 176.55668 * 5 4 3 11 11 H 1.09001 * 110.07791 * 238.59531 * 10 5 4 12 12 N 1.46906 * 110.03121 * 359.97438 * 10 5 4 13 13 C 1.46897 * 111.00037 * 190.77367 * 12 10 5 14 14 C 1.53003 * 109.47156 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.47155 * 304.99876 * 14 13 12 16 16 C 1.47195 * 109.47189 * 65.00007 * 14 13 12 17 17 N 6.71001 * 161.80049 * 241.87915 * 2 1 3 18 18 C 1.53003 * 109.47259 * 184.99966 * 14 13 12 19 19 C 1.50693 * 109.47286 * 175.00034 * 18 14 13 20 20 H 1.08004 * 119.99669 * 359.97438 * 19 18 14 21 21 C 1.37874 * 120.00356 * 180.02562 * 19 18 14 22 22 N 1.31520 * 119.99899 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00223 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47332 * 90.00378 * 23 21 19 25 25 H 1.48509 * 109.47299 * 209.99805 * 23 21 19 26 26 H 1.48496 * 109.47276 * 329.99783 * 23 21 19 27 27 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47347 * 299.99950 * 1 2 3 29 29 H 1.09003 * 109.47011 * 59.99647 * 1 2 3 30 30 H 1.09005 * 109.46847 * 240.00309 * 2 1 3 31 31 H 1.08996 * 109.47316 * 120.00558 * 2 1 3 32 32 H 1.09005 * 109.46971 * 60.00385 * 3 2 1 33 33 H 1.08996 * 109.47445 * 300.00479 * 3 2 1 34 34 H 1.08997 * 109.46829 * 59.99987 * 4 3 2 35 35 H 1.09003 * 109.47011 * 300.00353 * 4 3 2 36 36 H 1.09001 * 110.48517 * 98.42859 * 7 5 4 37 37 H 1.09009 * 110.48861 * 335.78600 * 7 5 4 38 38 H 1.08999 * 110.75830 * 279.62930 * 8 7 5 39 39 H 1.08997 * 110.75882 * 156.25413 * 8 7 5 40 40 H 1.08995 * 110.48501 * 203.38047 * 9 8 7 41 41 H 1.09001 * 110.48386 * 80.73249 * 9 8 7 42 42 H 1.00899 * 111.00249 * 314.72959 * 12 10 5 43 43 H 1.08996 * 109.47372 * 60.00129 * 13 12 10 44 44 H 1.09011 * 109.47453 * 299.99991 * 13 12 10 45 45 H 1.08998 * 109.47121 * 294.99978 * 18 14 13 46 46 H 1.09004 * 109.46943 * 54.99802 * 18 14 13 47 47 H 0.96998 * 119.99961 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6533 3.4320 0.8406 7 6 3.7059 3.5783 -1.3263 8 6 4.9263 4.4783 -1.6419 9 6 6.1221 3.6032 -1.1907 10 6 5.6162 2.9008 0.0862 11 1 5.9358 3.4550 0.9687 12 7 6.1313 1.5262 0.1426 13 6 7.5609 1.5131 0.4801 14 6 8.0603 0.0677 0.5287 15 1 7.4449 -0.5062 1.2215 16 6 7.9720 -0.5274 -0.8146 17 7 7.9044 -0.9878 -1.8483 18 6 9.5154 0.0464 1.0013 19 6 9.9689 -1.3811 1.1670 20 1 9.2873 -2.1921 0.9567 21 6 11.2535 -1.6519 1.5880 22 7 12.0834 -0.6643 1.8445 23 14 11.8155 -3.4214 1.7940 24 1 12.3971 -3.9079 0.5172 25 1 12.8421 -3.4933 2.8647 26 1 10.6542 -4.2696 2.1641 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 0.9288 -0.8908 35 1 3.9337 0.9284 0.8891 36 1 2.8081 4.1834 -1.2004 37 1 3.5620 2.8401 -2.1154 38 1 4.8844 5.4022 -1.0650 39 1 4.9841 4.6905 -2.7094 40 1 6.9875 4.2265 -0.9659 41 1 6.3684 2.8691 -1.9579 42 1 5.6008 0.9676 0.7942 43 1 7.7089 1.9819 1.4530 44 1 8.1183 2.0644 -0.2774 45 1 10.1444 0.5441 0.2632 46 1 9.5949 0.5661 1.9561 47 1 12.9871 -0.8548 2.1411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755048735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:34 Heat of formation + Delta-G solvation = -17.952175 kcal Electronic energy + Delta-G solvation = -21758.583810 eV Core-core repulsion = 18746.427282 eV Total energy + Delta-G solvation = -3012.156528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.39002 -36.82305 -35.47846 -34.39042 -33.24208 -31.55513 -31.15226 -27.61675 -27.26036 -25.58048 -23.31558 -22.82337 -21.74356 -21.22651 -20.50330 -18.85673 -16.97505 -16.47216 -16.06270 -15.52824 -15.31486 -14.80793 -14.58652 -14.07085 -13.84010 -13.70483 -13.52657 -13.08571 -12.89960 -12.45749 -12.31581 -12.02771 -11.81989 -11.62897 -11.62326 -11.37001 -11.23624 -11.09896 -11.08194 -10.99460 -10.83004 -10.73914 -10.65962 -10.60288 -10.50321 -10.41433 -10.26784 -10.18303 -9.51367 -9.20818 -8.45133 -8.20633 -6.08953 -4.12030 3.30268 3.36795 3.40034 3.78923 3.88457 4.26995 4.42589 4.48936 4.54595 4.68563 4.85710 4.94368 4.99215 5.02161 5.24918 5.29201 5.34225 5.39890 5.44513 5.50478 5.54720 5.59782 5.64703 5.68894 5.73141 5.77971 5.83057 5.88493 5.93529 5.95119 6.04207 6.06753 6.09767 6.15178 6.16641 6.28718 6.37359 6.43871 6.47521 6.53934 7.24047 7.43718 7.53739 7.58989 7.86466 8.24258 8.62157 8.92875 9.53405 11.01973 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.003650 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.378130 B = 7670.396771 C = 8659.693355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.108 4.108 5 C -0.088 4.088 6 H 0.067 0.933 7 C -0.114 4.114 8 C -0.125 4.125 9 C -0.117 4.117 10 C 0.087 3.913 11 H 0.041 0.959 12 N -0.687 5.687 13 C 0.064 3.936 14 C 0.009 3.991 15 H 0.097 0.903 16 C 0.257 3.743 17 N -0.480 5.480 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.342 0.658 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.026 0.974 46 H 0.036 0.964 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.649 9.926 -1.028 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.146 4.146 5 C -0.107 4.107 6 H 0.086 0.914 7 C -0.151 4.151 8 C -0.163 4.163 9 C -0.155 4.155 10 C -0.023 4.023 11 H 0.059 0.941 12 N -0.321 5.321 13 C -0.066 4.066 14 C -0.013 4.013 15 H 0.115 0.885 16 C -0.060 4.060 17 N -0.157 5.157 18 C -0.007 4.007 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.531 5.531 23 Si 0.719 3.281 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.197 1.197 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.163 0.837 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.463 9.218 -3.185 21.770 hybrid contribution 0.537 -0.577 1.549 1.738 sum -18.927 8.641 -1.636 20.870 Atomic orbital electron populations 1.21777 0.96291 1.01384 1.01496 1.21544 0.95426 0.97228 1.02234 1.21654 0.96019 0.96428 1.01582 1.21587 0.94169 0.95852 1.02947 1.21855 0.94320 0.96594 0.97901 0.91417 1.22388 0.97371 0.98284 0.97086 1.22459 0.95197 0.97930 1.00696 1.22440 0.97182 0.98218 0.97628 1.22123 0.93672 0.89333 0.97151 0.94109 1.60860 1.03497 1.11219 1.56492 1.22086 0.88257 0.96097 1.00128 1.19207 1.02838 0.93155 0.86100 0.88505 1.28740 0.90787 0.92150 0.94314 1.80874 1.11215 1.10417 1.13181 1.19158 0.86110 0.98186 0.97222 1.21150 0.97643 0.91929 1.45667 0.92517 1.24955 0.96680 0.97196 0.95163 1.69942 1.06357 1.31043 1.45732 0.86595 0.78586 0.85042 0.77868 1.20634 1.21119 1.19743 0.92973 0.92971 0.92974 0.91967 0.92020 0.92550 0.92184 0.90449 0.92076 0.92238 0.91355 0.91901 0.91785 0.92110 0.90374 0.83673 0.93516 0.90604 0.95609 0.94532 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.10 5.93 -26.73 -0.16 -1.26 16 3 C -0.12 -1.01 5.05 -26.73 -0.14 -1.15 16 4 C -0.11 -1.04 3.45 -26.73 -0.09 -1.13 16 5 C -0.09 -0.84 2.95 -89.51 -0.26 -1.10 16 6 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 7 C -0.11 -1.04 5.45 -25.07 -0.14 -1.17 16 8 C -0.12 -1.18 6.91 -24.73 -0.17 -1.35 16 9 C -0.12 -1.33 5.77 -25.07 -0.14 -1.47 16 10 C 0.09 0.97 3.21 -66.59 -0.21 0.76 16 11 H 0.04 0.46 8.05 -51.93 -0.42 0.04 16 12 N -0.69 -8.80 5.09 -105.54 -0.54 -9.33 16 13 C 0.06 0.95 4.87 -3.82 -0.02 0.94 16 14 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 15 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 16 C 0.26 5.39 13.66 -20.84 -0.28 5.11 16 17 N -0.48 -10.95 18.52 42.06 0.78 -10.17 16 18 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 19 C -0.53 -14.07 8.60 -34.45 -0.30 -14.36 16 20 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 23 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 34 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 35 H 0.06 0.59 6.42 -51.93 -0.33 0.26 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.68 7.79 -51.92 -0.40 0.27 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 42 H 0.34 4.03 6.15 -39.29 -0.24 3.79 16 43 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 44 H 0.08 1.19 7.59 -51.92 -0.39 0.79 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -29.28 373.12 -9.29 -38.56 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.88 Total: -1.33 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.99 Total: -14.80 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.98 Total: -44.44 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.28 -9.29 -38.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755048735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.611 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds