Wall clock time and date at job start Tue Mar 31 2020 00:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47194 * 2 1 4 4 C 1.53001 * 109.47194 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47101 * 180.02562 * 4 3 2 6 6 H 1.08998 * 110.06121 * 55.14096 * 5 4 3 7 7 C 1.54262 * 110.03336 * 293.72085 * 5 4 3 8 8 C 1.54889 * 104.19974 * 217.10481 * 7 5 4 9 9 C 1.54899 * 102.74599 * 37.94468 * 8 7 5 10 10 C 1.53872 * 110.03321 * 176.55668 * 5 4 3 11 11 H 1.09001 * 110.07791 * 238.59531 * 10 5 4 12 12 N 1.46906 * 110.03121 * 359.97438 * 10 5 4 13 13 C 1.46897 * 111.00037 * 190.77367 * 12 10 5 14 14 C 1.53003 * 109.47156 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.47155 * 304.99876 * 14 13 12 16 16 C 1.47195 * 109.47189 * 65.00007 * 14 13 12 17 17 N 6.71001 * 161.80049 * 241.87915 * 2 1 3 18 18 C 1.53003 * 109.47259 * 184.99966 * 14 13 12 19 19 C 1.50693 * 109.47286 * 175.00034 * 18 14 13 20 20 H 1.08004 * 119.99669 * 359.97438 * 19 18 14 21 21 C 1.37874 * 120.00356 * 180.02562 * 19 18 14 22 22 N 1.31520 * 119.99899 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00223 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47332 * 90.00378 * 23 21 19 25 25 H 1.48509 * 109.47299 * 209.99805 * 23 21 19 26 26 H 1.48496 * 109.47276 * 329.99783 * 23 21 19 27 27 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47347 * 299.99950 * 1 2 3 29 29 H 1.09003 * 109.47011 * 59.99647 * 1 2 3 30 30 H 1.09005 * 109.46847 * 240.00309 * 2 1 3 31 31 H 1.08996 * 109.47316 * 120.00558 * 2 1 3 32 32 H 1.09005 * 109.46971 * 60.00385 * 3 2 1 33 33 H 1.08996 * 109.47445 * 300.00479 * 3 2 1 34 34 H 1.08997 * 109.46829 * 59.99987 * 4 3 2 35 35 H 1.09003 * 109.47011 * 300.00353 * 4 3 2 36 36 H 1.09001 * 110.48517 * 98.42859 * 7 5 4 37 37 H 1.09009 * 110.48861 * 335.78600 * 7 5 4 38 38 H 1.08999 * 110.75830 * 279.62930 * 8 7 5 39 39 H 1.08997 * 110.75882 * 156.25413 * 8 7 5 40 40 H 1.08995 * 110.48501 * 203.38047 * 9 8 7 41 41 H 1.09001 * 110.48386 * 80.73249 * 9 8 7 42 42 H 1.00899 * 111.00249 * 314.72959 * 12 10 5 43 43 H 1.08996 * 109.47372 * 60.00129 * 13 12 10 44 44 H 1.09011 * 109.47453 * 299.99991 * 13 12 10 45 45 H 1.08998 * 109.47121 * 294.99978 * 18 14 13 46 46 H 1.09004 * 109.46943 * 54.99802 * 18 14 13 47 47 H 0.96998 * 119.99961 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6533 3.4320 0.8406 7 6 3.7059 3.5783 -1.3263 8 6 4.9263 4.4783 -1.6419 9 6 6.1221 3.6032 -1.1907 10 6 5.6162 2.9008 0.0862 11 1 5.9358 3.4550 0.9687 12 7 6.1313 1.5262 0.1426 13 6 7.5609 1.5131 0.4801 14 6 8.0603 0.0677 0.5287 15 1 7.4449 -0.5062 1.2215 16 6 7.9720 -0.5274 -0.8146 17 7 7.9044 -0.9878 -1.8483 18 6 9.5154 0.0464 1.0013 19 6 9.9689 -1.3811 1.1670 20 1 9.2873 -2.1921 0.9567 21 6 11.2535 -1.6519 1.5880 22 7 12.0834 -0.6643 1.8445 23 14 11.8155 -3.4214 1.7940 24 1 12.3971 -3.9079 0.5172 25 1 12.8421 -3.4933 2.8647 26 1 10.6542 -4.2696 2.1641 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 0.9288 -0.8908 35 1 3.9337 0.9284 0.8891 36 1 2.8081 4.1834 -1.2004 37 1 3.5620 2.8401 -2.1154 38 1 4.8844 5.4022 -1.0650 39 1 4.9841 4.6905 -2.7094 40 1 6.9875 4.2265 -0.9659 41 1 6.3684 2.8691 -1.9579 42 1 5.6008 0.9676 0.7942 43 1 7.7089 1.9819 1.4530 44 1 8.1183 2.0644 -0.2774 45 1 10.1444 0.5441 0.2632 46 1 9.5949 0.5661 1.9561 47 1 12.9871 -0.8548 2.1411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755048735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:32 Heat of formation + Delta-G solvation = -32.035136 kcal Electronic energy + Delta-G solvation = -21759.194493 eV Core-core repulsion = 18746.427282 eV Total energy + Delta-G solvation = -3012.767211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.27992 -38.34451 -36.32569 -35.82010 -34.98794 -32.93463 -32.13373 -29.01936 -28.00089 -26.99471 -24.27066 -24.06905 -23.44547 -21.99120 -21.29318 -19.72973 -18.59124 -18.31210 -16.98070 -16.64172 -16.27862 -16.21571 -15.80285 -15.34342 -14.87140 -14.60845 -14.55786 -14.44382 -14.14431 -13.77108 -13.68884 -13.35143 -13.19444 -13.08077 -12.94645 -12.58459 -12.53151 -12.34162 -12.21550 -12.15488 -11.92740 -11.85727 -11.81210 -11.59402 -11.49867 -11.41832 -11.33560 -11.21104 -11.05985 -10.99162 -10.56229 -9.23072 -8.19917 -6.28294 1.39625 1.41893 1.51057 2.09787 2.16641 2.41214 3.15302 3.23287 3.38974 3.69017 3.75225 3.92243 4.17454 4.24039 4.25936 4.34051 4.38253 4.51039 4.58717 4.65013 4.69134 4.73270 4.77091 4.82893 4.85501 4.87235 4.98736 5.01178 5.08001 5.08670 5.13750 5.21018 5.26678 5.29305 5.33100 5.38501 5.42737 5.46354 5.54802 5.58143 5.61705 5.68914 5.78944 6.13850 6.25652 6.61184 6.83160 6.94543 7.40357 8.91078 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.003650 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.378130 B = 7670.396771 C = 8659.693355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.103 4.103 5 C -0.082 4.082 6 H 0.083 0.917 7 C -0.111 4.111 8 C -0.120 4.120 9 C -0.120 4.120 10 C 0.086 3.914 11 H 0.048 0.952 12 N -0.692 5.692 13 C 0.077 3.923 14 C 0.020 3.980 15 H 0.118 0.882 16 C 0.267 3.733 17 N -0.515 5.515 18 C 0.039 3.961 19 C -0.539 4.539 20 H 0.054 0.946 21 C 0.011 3.989 22 N -0.924 5.924 23 Si 0.948 3.052 24 H -0.284 1.284 25 H -0.278 1.278 26 H -0.263 1.263 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.349 0.651 43 H 0.063 0.937 44 H 0.064 0.936 45 H -0.002 1.002 46 H 0.034 0.966 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.314 10.389 -0.050 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.101 4.101 6 H 0.102 0.898 7 C -0.148 4.148 8 C -0.158 4.158 9 C -0.158 4.158 10 C -0.023 4.023 11 H 0.066 0.934 12 N -0.327 5.327 13 C -0.053 4.053 14 C -0.002 4.002 15 H 0.136 0.864 16 C -0.049 4.049 17 N -0.192 5.192 18 C 0.000 4.000 19 C -0.577 4.577 20 H 0.073 0.927 21 C -0.188 4.188 22 N -0.564 5.564 23 Si 0.774 3.226 24 H -0.211 1.211 25 H -0.203 1.203 26 H -0.187 1.187 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.172 0.828 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.017 0.983 46 H 0.053 0.947 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.149 9.680 -2.206 23.363 hybrid contribution 1.058 -0.707 1.220 1.763 sum -20.091 8.973 -0.986 22.025 Atomic orbital electron populations 1.21763 0.95389 1.01667 1.01974 1.21550 0.96258 0.97284 1.01529 1.21596 0.94972 0.96348 1.02120 1.21506 0.95069 0.95756 1.01771 1.21843 0.92942 0.96639 0.98685 0.89836 1.22370 0.97923 0.98098 0.96452 1.22448 0.94212 0.98105 1.01025 1.22431 0.98187 0.98016 0.97151 1.22204 0.94857 0.88144 0.97131 0.93364 1.60797 1.02334 1.12713 1.56850 1.21862 0.89471 0.93265 1.00693 1.19172 1.00347 0.95752 0.84924 0.86416 1.29231 0.89831 0.91270 0.94577 1.80870 1.12218 1.11763 1.14361 1.18976 0.88569 0.96108 0.96369 1.21561 0.97750 0.93505 1.44871 0.92741 1.25725 0.97063 1.00827 0.95209 1.70036 1.06709 1.32848 1.46808 0.85693 0.78466 0.80789 0.77638 1.21062 1.20323 1.18736 0.92851 0.92262 0.92702 0.93187 0.92254 0.91509 0.92010 0.92817 0.92010 0.90492 0.92571 0.90485 0.91657 0.92233 0.93051 0.82812 0.91907 0.91703 0.98326 0.94733 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.13 -2.08 5.93 30.59 0.18 -1.89 16 3 C -0.11 -1.71 5.05 30.59 0.15 -1.55 16 4 C -0.10 -1.84 3.45 30.59 0.11 -1.73 16 5 C -0.08 -1.39 2.95 -10.07 -0.03 -1.42 16 6 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 7 C -0.11 -1.81 5.45 31.67 0.17 -1.63 16 8 C -0.12 -2.06 6.91 31.89 0.22 -1.84 16 9 C -0.12 -2.64 5.77 31.67 0.18 -2.45 16 10 C 0.09 1.78 3.21 45.64 0.15 1.92 16 11 H 0.05 0.95 8.05 -2.39 -0.02 0.94 16 12 N -0.69 -16.94 5.09 -487.81 -2.48 -19.42 16 13 C 0.08 2.22 4.87 86.30 0.42 2.64 16 14 C 0.02 0.72 2.35 -12.60 -0.03 0.69 16 15 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 16 C 0.27 11.19 13.66 89.47 1.22 12.41 16 17 N -0.51 -23.64 18.52 19.98 0.37 -23.27 16 18 C 0.04 1.80 4.42 29.85 0.13 1.93 16 19 C -0.54 -28.76 8.60 25.60 0.22 -28.54 16 20 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 21 C 0.01 0.59 5.46 84.65 0.46 1.05 16 22 N -0.92 -53.46 13.29 21.45 0.28 -53.17 16 23 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 0.92 7.45 -2.39 -0.02 0.90 16 34 H 0.05 1.22 7.85 -2.39 -0.02 1.21 16 35 H 0.06 1.08 6.42 -2.39 -0.02 1.07 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.06 7.79 -2.38 -0.02 1.04 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.40 8.05 -2.39 -0.02 1.38 16 42 H 0.35 7.65 6.15 -89.69 -0.55 7.10 16 43 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 44 H 0.06 2.02 7.59 -2.38 -0.02 2.00 16 45 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -62.28 373.12 4.83 -57.44 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.36 Total: 14.49 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.27 Total: -21.76 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -1.83 Total: -95.87 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -62.28 4.83 -57.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755048735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.410 kcal (2) G-P(sol) polarization free energy of solvation -62.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds