Wall clock time and date at job start Tue Mar 31 2020 00:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47494 * 2 1 4 4 C 1.52998 * 109.47015 * 120.00087 * 2 1 3 5 5 C 1.53000 * 109.47281 * 174.99458 * 4 2 1 6 6 C 1.53119 * 109.52412 * 174.99789 * 5 4 2 7 7 C 1.53040 * 109.27917 * 177.55898 * 6 5 4 8 8 N 1.46842 * 109.52651 * 300.82804 * 7 6 5 9 9 C 1.46899 * 111.00041 * 185.83838 * 8 7 6 10 10 C 1.52997 * 109.47254 * 169.99637 * 9 8 7 11 11 H 1.09008 * 109.47017 * 54.99767 * 10 9 8 12 12 C 1.47205 * 109.47256 * 295.00102 * 10 9 8 13 13 N 7.92301 * 128.99478 * 170.94766 * 2 1 3 14 14 C 1.52994 * 109.47404 * 174.99689 * 10 9 8 15 15 C 1.50701 * 109.47248 * 184.99754 * 14 10 9 16 16 H 1.07997 * 120.00120 * 0.02562 * 15 14 10 17 17 C 1.37881 * 119.99825 * 179.97438 * 15 14 10 18 18 N 1.31511 * 119.99974 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00091 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47323 * 89.99961 * 19 17 15 21 21 H 1.48504 * 109.46935 * 209.99740 * 19 17 15 22 22 H 1.48493 * 109.47102 * 329.99583 * 19 17 15 23 23 C 1.46843 * 111.20263 * 61.73690 * 8 7 6 24 24 C 1.53043 * 109.52446 * 298.26417 * 23 8 7 25 25 H 1.09004 * 109.47053 * 299.99924 * 1 2 3 26 26 H 1.09004 * 109.46986 * 59.99487 * 1 2 3 27 27 H 1.08997 * 109.47376 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46775 * 239.99604 * 2 1 3 29 29 H 1.08998 * 109.46839 * 299.99882 * 3 2 1 30 30 H 1.09004 * 109.46908 * 59.99987 * 3 2 1 31 31 H 1.09001 * 109.47415 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47181 * 54.99785 * 4 2 1 33 33 H 1.09002 * 109.47376 * 294.99701 * 4 2 1 34 34 H 1.09007 * 109.52135 * 54.87580 * 5 4 2 35 35 H 1.09002 * 109.50021 * 57.62626 * 6 5 4 36 36 H 1.09003 * 109.53874 * 297.52271 * 6 5 4 37 37 H 1.08998 * 109.46221 * 180.80268 * 7 6 5 38 38 H 1.09002 * 109.44829 * 60.83620 * 7 6 5 39 39 H 1.09002 * 109.47043 * 289.99708 * 9 8 7 40 40 H 1.09001 * 109.47354 * 49.99769 * 9 8 7 41 41 H 1.09001 * 109.47698 * 305.00111 * 14 10 9 42 42 H 1.09009 * 109.47010 * 65.00116 * 14 10 9 43 43 H 0.97003 * 120.00629 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.46019 * 58.27642 * 23 8 7 45 45 H 1.08999 * 109.46883 * 178.24462 * 23 8 7 46 46 H 1.09007 * 109.49669 * 299.23395 * 24 23 8 47 47 H 1.09001 * 109.53519 * 179.13897 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5647 -0.8312 1.1879 6 6 4.0867 -1.4399 2.4924 7 6 5.6056 -1.6037 2.4013 8 7 5.9382 -2.4741 1.2664 9 6 7.3775 -2.7658 1.2307 10 6 7.6503 -3.8626 0.1994 11 1 7.2435 -3.5624 -0.7664 12 6 7.0097 -5.1148 0.6337 13 7 6.5155 -6.0811 0.9688 14 6 9.1594 -4.0791 0.0721 15 6 9.4336 -5.0702 -1.0296 16 1 8.6135 -5.5021 -1.5838 17 6 10.7316 -5.4247 -1.3306 18 7 10.9709 -6.2892 -2.2923 19 14 12.1502 -4.6771 -0.3724 20 1 12.4542 -5.5277 0.8063 21 1 13.3485 -4.5950 -1.2457 22 1 11.7758 -3.3145 0.0838 23 6 5.4886 -1.8875 -0.0025 24 6 3.9662 -1.7322 0.0168 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6052 -1.7199 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.9962 0.1603 1.0505 35 1 3.6245 -2.4145 2.6497 36 1 3.8410 -0.7817 3.3258 37 1 5.9787 -2.0501 3.3230 38 1 6.0680 -0.6271 2.2576 39 1 7.9243 -1.8640 0.9553 40 1 7.7044 -3.1028 2.2144 41 1 9.6440 -3.1314 -0.1628 42 1 9.5519 -4.4643 1.0133 43 1 11.8840 -6.5390 -2.5039 44 1 5.9517 -0.9096 -0.1348 45 1 5.7766 -2.5400 -0.8267 46 1 3.5021 -2.7114 0.1352 47 1 3.6338 -1.2826 -0.9189 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760968870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:41 Heat of formation + Delta-G solvation = -10.444005 kcal Electronic energy + Delta-G solvation = -21967.137331 eV Core-core repulsion = 18955.306382 eV Total energy + Delta-G solvation = -3011.830950 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.57195 -37.37259 -35.93102 -34.00574 -32.97862 -31.47650 -30.83239 -28.18664 -27.42353 -26.28588 -23.57552 -23.22883 -21.67114 -21.39585 -20.09274 -19.51839 -16.89522 -16.71727 -15.97749 -15.50114 -14.83922 -14.66298 -14.49351 -14.29870 -13.92733 -13.82091 -13.41403 -13.25895 -12.84909 -12.55114 -12.45598 -12.35181 -12.24625 -12.16962 -11.97341 -11.64992 -11.40187 -11.32716 -11.25569 -11.19493 -11.09119 -10.90462 -10.77147 -10.44070 -10.38888 -10.17779 -10.04222 -9.92403 -9.69300 -9.30454 -8.61111 -8.18424 -6.10016 -4.10534 3.27177 3.34636 3.35043 3.72467 3.81613 3.98704 4.38700 4.45591 4.58326 4.66871 4.81432 4.83712 4.93304 5.05202 5.18113 5.24949 5.31223 5.33896 5.37442 5.43962 5.50172 5.53746 5.55976 5.57015 5.60414 5.67615 5.74833 5.78768 5.82849 5.85292 5.92784 5.99909 6.02300 6.08925 6.11077 6.13996 6.23432 6.26400 6.35897 6.43540 6.95544 7.10729 7.17972 7.23395 7.64698 8.41649 8.58599 8.93803 9.49868 11.03135 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.003296 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.877771 B = 8492.883720 C = 8519.606351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.090 4.090 6 C -0.111 4.111 7 C 0.058 3.942 8 N -0.540 5.540 9 C 0.060 3.940 10 C 0.020 3.980 11 H 0.105 0.895 12 C 0.254 3.746 13 N -0.473 5.473 14 C -0.005 4.005 15 C -0.527 4.527 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.050 3.950 24 C -0.111 4.111 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.021 0.979 43 H 0.264 0.736 44 H 0.033 0.967 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.059 17.719 7.128 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.205 4.205 4 C -0.145 4.145 5 C -0.108 4.108 6 C -0.149 4.149 7 C -0.070 4.070 8 N -0.265 5.265 9 C -0.068 4.068 10 C -0.002 4.002 11 H 0.123 0.877 12 C -0.063 4.063 13 N -0.149 5.149 14 C -0.044 4.044 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.078 4.078 24 C -0.149 4.149 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.917 15.727 7.602 24.317 hybrid contribution 1.535 1.342 0.121 2.043 sum -15.382 17.068 7.723 24.240 Atomic orbital electron populations 1.21844 0.95577 1.01615 1.01445 1.21172 0.95351 0.96353 0.98992 1.21886 1.01290 0.96019 1.01341 1.21671 0.95101 1.00403 0.97365 1.21266 0.95122 0.99025 0.95385 1.21628 0.95079 1.01291 0.96861 1.22037 0.96007 0.94746 0.94240 1.61918 1.15949 1.45538 1.03048 1.22235 0.87123 0.97371 1.00116 1.19000 0.97868 0.84951 0.98382 0.87717 1.28682 0.91483 0.93896 0.92224 1.80986 1.11709 1.11939 1.10281 1.19645 0.88102 0.98475 0.98204 1.21030 0.93994 1.24469 1.16985 0.90785 1.24992 0.98819 0.94541 0.94769 1.69904 1.20636 1.32802 1.30203 0.86817 0.82144 0.80404 0.80171 1.20237 1.21280 1.18756 1.22185 0.95435 0.97819 0.92370 1.21676 0.95245 1.00200 0.97767 0.92949 0.92928 0.92761 0.90828 0.93043 0.92990 0.92360 0.91924 0.92262 0.91300 0.91179 0.91969 0.90951 0.95076 0.93010 0.90296 0.94585 0.96115 0.92572 0.94847 0.89957 0.91178 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 2 C -0.10 -0.76 2.79 -90.62 -0.25 -1.01 16 3 C -0.15 -1.06 8.96 37.16 0.33 -0.72 16 4 C -0.11 -0.87 4.15 -26.73 -0.11 -0.98 16 5 C -0.09 -0.80 2.12 -90.50 -0.19 -1.00 16 6 C -0.11 -1.07 5.38 -26.65 -0.14 -1.22 16 7 C 0.06 0.63 5.46 -3.84 -0.02 0.61 16 8 N -0.54 -7.08 4.36 -234.67 -1.02 -8.10 16 9 C 0.06 0.86 4.32 -3.83 -0.02 0.84 16 10 C 0.02 0.36 2.13 -93.41 -0.20 0.16 16 11 H 0.11 1.81 6.22 -51.92 -0.32 1.49 16 12 C 0.25 5.35 13.67 -20.76 -0.28 5.06 16 13 N -0.47 -10.90 18.54 42.15 0.78 -10.12 16 14 C -0.01 -0.11 3.49 -27.89 -0.10 -0.21 16 15 C -0.53 -14.27 9.15 -34.44 -0.32 -14.59 16 16 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 19 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 23 C 0.05 0.59 5.30 -3.83 -0.02 0.57 16 24 C -0.11 -1.15 5.08 -26.65 -0.14 -1.29 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.60 6.41 -51.93 -0.33 0.26 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.43 6.46 -51.93 -0.34 0.09 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.08 1.11 7.99 -51.93 -0.41 0.69 16 41 H 0.04 0.73 7.20 -51.93 -0.37 0.36 16 42 H 0.02 0.45 7.57 -51.92 -0.39 0.06 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 1.06 6.12 -51.93 -0.32 0.74 16 46 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 47 H 0.07 0.62 6.60 -51.93 -0.34 0.28 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -30.67 362.64 -8.53 -39.20 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -8.65 Total: -3.53 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.21 Total: -12.56 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.53 Total: -44.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.67 -8.53 -39.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760968870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.758 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds