Wall clock time and date at job start Tue Mar 31 2020 00:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47494 * 2 1 4 4 C 1.52998 * 109.47015 * 120.00087 * 2 1 3 5 5 C 1.53000 * 109.47281 * 174.99458 * 4 2 1 6 6 C 1.53119 * 109.52412 * 174.99789 * 5 4 2 7 7 C 1.53040 * 109.27917 * 177.55898 * 6 5 4 8 8 N 1.46842 * 109.52651 * 300.82804 * 7 6 5 9 9 C 1.46899 * 111.00041 * 185.83838 * 8 7 6 10 10 C 1.52997 * 109.47254 * 169.99637 * 9 8 7 11 11 H 1.09008 * 109.47017 * 54.99767 * 10 9 8 12 12 C 1.47205 * 109.47256 * 295.00102 * 10 9 8 13 13 N 7.92301 * 128.99478 * 170.94766 * 2 1 3 14 14 C 1.52994 * 109.47404 * 174.99689 * 10 9 8 15 15 C 1.50701 * 109.47248 * 184.99754 * 14 10 9 16 16 H 1.07997 * 120.00120 * 0.02562 * 15 14 10 17 17 C 1.37881 * 119.99825 * 179.97438 * 15 14 10 18 18 N 1.31511 * 119.99974 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00091 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47323 * 89.99961 * 19 17 15 21 21 H 1.48504 * 109.46935 * 209.99740 * 19 17 15 22 22 H 1.48493 * 109.47102 * 329.99583 * 19 17 15 23 23 C 1.46843 * 111.20263 * 61.73690 * 8 7 6 24 24 C 1.53043 * 109.52446 * 298.26417 * 23 8 7 25 25 H 1.09004 * 109.47053 * 299.99924 * 1 2 3 26 26 H 1.09004 * 109.46986 * 59.99487 * 1 2 3 27 27 H 1.08997 * 109.47376 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46775 * 239.99604 * 2 1 3 29 29 H 1.08998 * 109.46839 * 299.99882 * 3 2 1 30 30 H 1.09004 * 109.46908 * 59.99987 * 3 2 1 31 31 H 1.09001 * 109.47415 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47181 * 54.99785 * 4 2 1 33 33 H 1.09002 * 109.47376 * 294.99701 * 4 2 1 34 34 H 1.09007 * 109.52135 * 54.87580 * 5 4 2 35 35 H 1.09002 * 109.50021 * 57.62626 * 6 5 4 36 36 H 1.09003 * 109.53874 * 297.52271 * 6 5 4 37 37 H 1.08998 * 109.46221 * 180.80268 * 7 6 5 38 38 H 1.09002 * 109.44829 * 60.83620 * 7 6 5 39 39 H 1.09002 * 109.47043 * 289.99708 * 9 8 7 40 40 H 1.09001 * 109.47354 * 49.99769 * 9 8 7 41 41 H 1.09001 * 109.47698 * 305.00111 * 14 10 9 42 42 H 1.09009 * 109.47010 * 65.00116 * 14 10 9 43 43 H 0.97003 * 120.00629 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.46019 * 58.27642 * 23 8 7 45 45 H 1.08999 * 109.46883 * 178.24462 * 23 8 7 46 46 H 1.09007 * 109.49669 * 299.23395 * 24 23 8 47 47 H 1.09001 * 109.53519 * 179.13897 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5647 -0.8312 1.1879 6 6 4.0867 -1.4399 2.4924 7 6 5.6056 -1.6037 2.4013 8 7 5.9382 -2.4741 1.2664 9 6 7.3775 -2.7658 1.2307 10 6 7.6503 -3.8626 0.1994 11 1 7.2435 -3.5624 -0.7664 12 6 7.0097 -5.1148 0.6337 13 7 6.5155 -6.0811 0.9688 14 6 9.1594 -4.0791 0.0721 15 6 9.4336 -5.0702 -1.0296 16 1 8.6135 -5.5021 -1.5838 17 6 10.7316 -5.4247 -1.3306 18 7 10.9709 -6.2892 -2.2923 19 14 12.1502 -4.6771 -0.3724 20 1 12.4542 -5.5277 0.8063 21 1 13.3485 -4.5950 -1.2457 22 1 11.7758 -3.3145 0.0838 23 6 5.4886 -1.8875 -0.0025 24 6 3.9662 -1.7322 0.0168 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6052 -1.7199 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.9962 0.1603 1.0505 35 1 3.6245 -2.4145 2.6497 36 1 3.8410 -0.7817 3.3258 37 1 5.9787 -2.0501 3.3230 38 1 6.0680 -0.6271 2.2576 39 1 7.9243 -1.8640 0.9553 40 1 7.7044 -3.1028 2.2144 41 1 9.6440 -3.1314 -0.1628 42 1 9.5519 -4.4643 1.0133 43 1 11.8840 -6.5390 -2.5039 44 1 5.9517 -0.9096 -0.1348 45 1 5.7766 -2.5400 -0.8267 46 1 3.5021 -2.7114 0.1352 47 1 3.6338 -1.2826 -0.9189 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760968870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:40 Heat of formation + Delta-G solvation = -27.498292 kcal Electronic energy + Delta-G solvation = -21967.876861 eV Core-core repulsion = 18955.306382 eV Total energy + Delta-G solvation = -3012.570479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.46690 -38.50411 -37.13391 -35.59577 -34.48216 -32.96276 -31.69182 -29.47874 -27.96945 -27.53496 -24.66443 -24.17402 -23.20714 -22.59495 -20.81496 -20.24618 -18.91819 -18.21237 -17.06901 -16.21763 -16.17477 -15.78211 -15.59146 -15.26271 -15.06876 -14.74184 -14.60403 -14.47099 -14.32497 -13.84029 -13.72279 -13.39450 -13.17992 -13.15474 -13.04725 -12.93996 -12.77326 -12.58344 -12.35388 -12.11873 -12.03756 -11.87578 -11.78320 -11.70508 -11.60331 -11.48625 -11.33212 -11.13539 -10.84988 -10.79804 -10.73351 -9.13281 -8.24671 -6.30452 1.43370 1.44457 1.55604 2.05456 2.13316 2.41093 2.97988 3.11913 3.33304 3.77065 3.87887 3.94595 4.04553 4.16659 4.25659 4.36049 4.38933 4.45516 4.55673 4.57114 4.66748 4.71669 4.75486 4.83098 4.84719 4.87883 4.89357 4.95353 5.03065 5.05801 5.08357 5.16435 5.17417 5.23956 5.24751 5.31647 5.35548 5.42969 5.44488 5.49098 5.60967 5.63553 5.69165 6.17902 6.28662 6.30567 6.76960 6.91174 7.33921 8.92379 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.003296 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.877771 B = 8492.883720 C = 8519.606351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.103 4.103 5 C -0.083 4.083 6 C -0.108 4.108 7 C 0.058 3.942 8 N -0.558 5.558 9 C 0.070 3.930 10 C 0.025 3.975 11 H 0.111 0.889 12 C 0.265 3.735 13 N -0.517 5.517 14 C -0.002 4.002 15 C -0.531 4.531 16 H 0.027 0.973 17 C 0.002 3.998 18 N -0.955 5.955 19 Si 0.949 3.051 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.223 1.223 23 C 0.048 3.952 24 C -0.107 4.107 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.026 0.974 43 H 0.265 0.735 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.048 0.952 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.770 21.015 8.851 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.141 4.141 5 C -0.101 4.101 6 C -0.146 4.146 7 C -0.070 4.070 8 N -0.283 5.283 9 C -0.059 4.059 10 C 0.003 3.997 11 H 0.128 0.872 12 C -0.052 4.052 13 N -0.194 5.194 14 C -0.041 4.041 15 C -0.569 4.569 16 H 0.045 0.955 17 C -0.194 4.194 18 N -0.595 5.595 19 Si 0.771 3.229 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.145 1.145 23 C -0.079 4.079 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.660 19.049 9.340 26.975 hybrid contribution 1.341 0.252 -0.487 1.449 sum -15.319 19.300 8.853 26.183 Atomic orbital electron populations 1.21837 0.95211 1.01493 1.01891 1.21159 0.95695 0.96654 0.98330 1.21864 1.01197 0.95504 1.01734 1.21618 0.94433 1.00018 0.98006 1.21214 0.95667 0.98883 0.94329 1.21616 0.94296 1.00810 0.97856 1.22093 0.96722 0.94921 0.93230 1.61857 1.15226 1.47056 1.04207 1.22104 0.88403 0.96550 0.98823 1.19109 0.95494 0.84896 1.00231 0.87178 1.29392 0.90671 0.94063 0.91027 1.80979 1.13109 1.13285 1.12051 1.19590 0.90594 0.97894 0.96042 1.21394 0.92719 1.25025 1.17751 0.95451 1.26054 1.02370 0.95106 0.95888 1.70089 1.21349 1.35283 1.32821 0.85689 0.77663 0.81348 0.78160 1.20206 1.21517 1.14479 1.22203 0.96319 0.97996 0.91414 1.21636 0.94255 0.99562 0.99057 0.92457 0.92536 0.93197 0.91603 0.92774 0.92519 0.92425 0.93014 0.91448 0.90333 0.93002 0.90117 0.90900 0.93593 0.90520 0.89787 0.91808 0.95555 0.92641 0.93381 0.91584 0.93304 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 2 C -0.10 -1.35 2.79 -10.80 -0.03 -1.38 16 3 C -0.15 -1.74 8.96 71.98 0.64 -1.10 16 4 C -0.10 -1.50 4.15 30.59 0.13 -1.37 16 5 C -0.08 -1.31 2.12 -10.72 -0.02 -1.33 16 6 C -0.11 -1.85 5.38 30.65 0.16 -1.69 16 7 C 0.06 1.10 5.46 86.33 0.47 1.57 16 8 N -0.56 -13.47 4.36 -896.37 -3.91 -17.38 16 9 C 0.07 1.79 4.32 86.30 0.37 2.16 16 10 C 0.02 0.85 2.13 -12.60 -0.03 0.82 16 11 H 0.11 3.74 6.22 -2.38 -0.01 3.72 16 12 C 0.26 11.16 13.67 89.44 1.22 12.39 16 13 N -0.52 -24.30 18.54 20.01 0.37 -23.93 16 14 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 15 C -0.53 -29.02 9.15 25.60 0.23 -28.79 16 16 H 0.03 1.70 7.84 -2.91 -0.02 1.67 16 17 C 0.00 0.14 5.47 84.66 0.46 0.60 16 18 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 19 Si 0.95 41.64 27.47 68.60 1.88 43.53 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.22 -8.27 6.54 99.48 0.65 -7.62 16 23 C 0.05 1.06 5.30 86.33 0.46 1.52 16 24 C -0.11 -2.10 5.08 30.65 0.16 -1.94 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.99 6.41 -2.39 -0.02 0.98 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.70 6.46 -2.39 -0.02 0.68 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.14 6.34 -2.38 -0.02 1.13 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.38 8.02 -2.39 -0.02 1.36 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 1.62 8.12 -2.39 -0.02 1.60 16 40 H 0.08 2.08 7.99 -2.39 -0.02 2.07 16 41 H 0.06 2.32 7.20 -2.39 -0.02 2.30 16 42 H 0.03 1.06 7.57 -2.38 -0.02 1.04 16 43 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.07 1.65 6.12 -2.39 -0.01 1.63 16 46 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.08 1.33 6.60 -2.39 -0.02 1.31 16 Total: -1.00 -68.35 362.64 4.50 -63.84 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.85 Total: 12.97 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 5.00 Total: -19.73 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -3.24 Total: -100.61 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.53 kcal Total: -68.35 4.50 -63.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760968870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.344 kcal (2) G-P(sol) polarization free energy of solvation -68.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds