Wall clock time and date at job start Tue Mar 31 2020 00:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47247 * 2 1 4 4 N 1.28595 * 124.62145 * 90.02303 * 3 2 1 5 5 C 1.31376 * 108.72689 * 180.02562 * 4 3 2 6 6 C 1.50694 * 127.05678 * 179.97438 * 5 4 3 7 7 C 1.39682 * 105.89539 * 0.02562 * 5 4 3 8 8 C 1.50701 * 127.04915 * 179.97438 * 7 5 4 9 9 N 1.46501 * 109.47096 * 90.00124 * 8 7 5 10 10 C 1.36935 * 120.00134 * 89.99651 * 9 8 7 11 11 H 1.08004 * 120.00110 * 216.73355 * 10 9 8 12 12 C 1.38810 * 120.00040 * 36.73345 * 10 9 8 13 13 N 1.31619 * 119.99785 * 21.70293 * 12 10 9 14 14 Si 1.86798 * 120.00170 * 201.70039 * 12 10 9 15 15 H 1.48498 * 109.46974 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46885 * 120.00108 * 14 12 10 17 17 H 1.48499 * 109.47260 * 239.99896 * 14 12 10 18 18 C 1.46501 * 119.99888 * 270.00227 * 9 8 7 19 19 C 1.54264 * 110.02935 * 242.05630 * 18 9 8 20 20 C 1.54971 * 104.15869 * 217.13430 * 19 18 9 21 21 C 1.54883 * 102.77641 * 37.88677 * 20 19 18 22 22 C 1.53870 * 110.03683 * 124.83782 * 18 9 8 23 23 N 1.28606 * 124.61888 * 269.72744 * 3 2 1 24 24 H 1.08995 * 109.46635 * 299.99799 * 1 2 3 25 25 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47149 * 60.00353 * 1 2 3 27 27 H 1.08994 * 109.47275 * 120.00175 * 2 1 3 28 28 H 1.09006 * 109.47034 * 239.99879 * 2 1 3 29 29 H 1.08997 * 109.47007 * 90.02309 * 6 5 4 30 30 H 1.08999 * 109.47593 * 210.03100 * 6 5 4 31 31 H 1.08996 * 109.47203 * 330.03059 * 6 5 4 32 32 H 1.09002 * 109.47174 * 209.99379 * 8 7 5 33 33 H 1.08994 * 109.47379 * 329.99893 * 8 7 5 34 34 H 0.97004 * 119.99923 * 174.92666 * 13 12 10 35 35 H 1.09003 * 110.01958 * 3.44044 * 18 9 8 36 36 H 1.08999 * 110.48656 * 335.77960 * 19 18 9 37 37 H 1.09000 * 110.48822 * 98.42666 * 19 18 9 38 38 H 1.09001 * 110.71854 * 279.57373 * 20 19 18 39 39 H 1.09003 * 110.92386 * 156.29696 * 20 19 18 40 40 H 1.09000 * 110.48928 * 203.40792 * 21 20 19 41 41 H 1.09006 * 110.59978 * 80.81682 * 21 20 19 42 42 H 1.08997 * 110.02981 * 238.56970 * 22 18 9 43 43 H 1.09000 * 110.03095 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2623 2.0698 1.0582 5 6 2.6829 3.2613 0.6984 6 6 3.0834 4.3954 1.6064 7 6 2.6814 3.2619 -0.6984 8 6 3.0807 4.3965 -1.6063 9 7 4.5126 4.3046 -1.9021 10 6 4.9431 3.5881 -2.9867 11 1 5.8590 3.0186 -2.9288 12 6 4.2025 3.5938 -4.1607 13 7 3.3575 4.5740 -4.4010 14 14 4.4049 2.2105 -5.3995 15 1 5.4084 1.2383 -4.8963 16 1 3.1027 1.5228 -5.5908 17 1 4.8641 2.7703 -6.6960 18 6 5.4839 4.9791 -1.0373 19 6 6.2581 6.0434 -1.8419 20 6 7.6996 5.9708 -1.2778 21 6 7.8979 4.4534 -1.0389 22 6 6.5259 3.9687 -0.5265 23 7 2.2667 2.0683 -1.0584 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 4.1491 4.3269 1.8247 30 1 2.8734 5.3456 1.1154 31 1 2.5176 4.3339 2.5359 32 1 2.5133 4.3355 -2.5351 33 1 2.8715 5.3463 -1.1144 34 1 2.8947 4.6176 -5.2524 35 1 4.9728 5.4462 -0.1954 36 1 6.2514 5.7983 -2.9040 37 1 5.8317 7.0326 -1.6751 38 1 7.7753 6.5225 -0.3408 39 1 8.4212 6.3450 -2.0041 40 1 8.6679 4.2830 -0.2865 41 1 8.1572 3.9492 -1.9699 42 1 6.5210 3.9460 0.5632 43 1 6.3087 2.9763 -0.9217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823459847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:22 Heat of formation + Delta-G solvation = 95.534118 kcal Electronic energy + Delta-G solvation = -23005.815598 eV Core-core repulsion = 19895.039862 eV Total energy + Delta-G solvation = -3110.775737 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.23992 -39.30796 -36.51828 -35.55499 -33.56884 -33.16021 -31.95052 -29.32879 -29.15353 -28.18527 -27.80206 -24.83297 -23.70046 -21.87003 -21.57567 -21.25340 -20.70727 -18.39313 -17.80672 -17.28155 -17.11618 -16.32117 -15.91752 -15.51497 -15.07527 -14.81893 -14.61991 -14.52404 -14.12456 -13.99512 -13.89284 -13.32576 -13.18926 -13.00275 -12.83102 -12.72576 -12.58223 -12.31326 -12.20482 -11.95006 -11.87449 -11.70536 -11.66573 -11.55566 -11.45692 -11.28867 -11.11070 -10.82187 -10.44042 -9.66636 -8.44583 -7.79989 -5.32390 1.04087 1.38871 1.44725 1.50955 1.64098 1.68309 2.52734 3.28421 3.38885 3.76928 3.95969 3.96606 4.05122 4.07009 4.12626 4.22039 4.36075 4.48450 4.58683 4.69391 4.74254 4.75215 4.82116 4.87310 4.98173 4.99655 5.03236 5.08491 5.10992 5.12065 5.23891 5.30444 5.37571 5.48731 5.54500 5.58772 5.69248 5.74491 5.77602 5.90054 6.06567 6.57334 7.24489 7.64871 7.96194 8.45702 9.20329 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.007934 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.571934 B = 3528.284804 C = 4873.484762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 N -0.171 5.171 4 N -0.311 5.311 5 C -0.013 4.013 6 C -0.053 4.053 7 C 0.000 4.000 8 C 0.225 3.775 9 N -0.573 5.573 10 C -0.236 4.236 11 H 0.044 0.956 12 C -0.022 4.022 13 N -0.911 5.911 14 Si 0.937 3.063 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.288 1.288 18 C 0.165 3.835 19 C -0.129 4.129 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.126 4.126 23 N -0.316 5.316 24 H 0.059 0.941 25 H 0.116 0.884 26 H 0.044 0.956 27 H 0.124 0.876 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.250 0.750 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.065 0.935 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 -2.489 12.046 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.008 3.992 3 N -0.073 5.073 4 N -0.154 5.154 5 C -0.175 4.175 6 C -0.111 4.111 7 C -0.166 4.166 8 C 0.096 3.904 9 N -0.292 5.292 10 C -0.367 4.367 11 H 0.061 0.939 12 C -0.220 4.220 13 N -0.556 5.556 14 Si 0.768 3.232 15 H -0.203 1.203 16 H -0.223 1.223 17 H -0.215 1.215 18 C 0.059 3.941 19 C -0.168 4.168 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.165 4.165 23 N -0.158 5.158 24 H 0.079 0.921 25 H 0.134 0.866 26 H 0.064 0.936 27 H 0.142 0.858 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.649 -3.841 11.925 12.545 hybrid contribution 0.132 -0.214 -1.340 1.364 sum -0.518 -4.054 10.585 11.347 Atomic orbital electron populations 1.22095 0.92170 1.05089 1.02111 1.22214 0.96868 0.73801 1.06269 1.48430 1.45759 1.14061 0.99010 1.73714 1.19460 1.05688 1.16562 1.23521 1.04989 0.95007 0.94029 1.20091 1.01994 0.92176 0.96874 1.24754 1.01693 0.95255 0.94874 1.19129 0.86429 0.89119 0.95682 1.43942 1.00346 1.57531 1.27380 1.18827 1.07220 1.20699 0.89977 0.93856 1.25508 1.00009 0.98232 0.98210 1.69957 1.31850 1.30801 1.22952 0.85676 0.76827 0.81025 0.79712 1.20346 1.22317 1.21543 1.21315 0.89779 0.91106 0.91942 1.22713 0.95765 0.98324 0.99999 1.22392 0.95800 0.95718 1.00919 1.22222 0.96550 0.96407 0.99990 1.22446 0.95829 0.98919 0.99310 1.74094 1.18797 1.06583 1.16298 0.92143 0.86554 0.93650 0.85802 0.87767 0.90130 0.89703 0.89659 0.90881 0.91954 0.94066 0.91125 0.93977 0.92631 0.89915 0.91902 0.90544 0.94065 0.91647 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.24 71.98 0.74 -2.62 16 2 C 0.13 3.32 7.26 86.38 0.63 3.94 16 3 N -0.17 -6.48 3.95 -187.51 -0.74 -7.22 16 4 N -0.31 -11.66 12.05 -47.25 -0.57 -12.23 16 5 C -0.01 -0.47 7.35 42.97 0.32 -0.16 16 6 C -0.05 -1.45 9.96 71.23 0.71 -0.74 16 7 C 0.00 -0.01 6.94 42.98 0.30 0.28 16 8 C 0.23 10.69 5.71 85.63 0.49 11.18 16 9 N -0.57 -27.53 2.37 -678.32 -1.61 -29.14 16 10 C -0.24 -12.86 7.78 84.03 0.65 -12.21 16 11 H 0.04 2.46 6.96 -2.91 -0.02 2.44 16 12 C -0.02 -1.24 4.95 84.86 0.42 -0.82 16 13 N -0.91 -52.88 11.42 21.65 0.25 -52.63 16 14 Si 0.94 46.64 29.61 68.60 2.03 48.67 16 15 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 16 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 17 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 18 C 0.16 6.49 3.41 45.71 0.16 6.64 16 19 C -0.13 -4.88 6.43 31.70 0.20 -4.68 16 20 C -0.11 -3.28 6.91 31.91 0.22 -3.06 16 21 C -0.11 -3.62 6.83 31.67 0.22 -3.40 16 22 C -0.13 -4.59 6.14 31.32 0.19 -4.40 16 23 N -0.32 -14.47 12.05 -47.24 -0.57 -15.04 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.17 7.50 -2.39 -0.02 2.15 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 4.08 5.46 -2.39 -0.01 4.07 16 33 H 0.06 2.66 7.32 -2.39 -0.02 2.65 16 34 H 0.25 14.17 8.32 -92.71 -0.77 13.40 16 35 H 0.07 2.48 7.48 -2.39 -0.02 2.46 16 36 H 0.04 1.96 7.20 -2.39 -0.02 1.94 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.03 1.38 6.74 -2.39 -0.02 1.37 16 Total: -1.00 -68.38 345.51 5.01 -63.37 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.98 Total: 14.24 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.24 Total: -10.03 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -3.24 Total: -116.25 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -68.38 5.01 -63.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823459847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.908 kcal (2) G-P(sol) polarization free energy of solvation -68.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds