Wall clock time and date at job start Tue Mar 31 2020 00:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46666 * 2 1 4 4 C 1.52995 * 109.46693 * 240.00762 * 2 1 3 5 5 C 1.50702 * 109.47482 * 64.99606 * 4 2 1 6 6 H 1.07997 * 119.99786 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00223 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99785 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00052 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46770 * 120.00473 * 9 7 5 12 12 H 1.48496 * 109.47478 * 240.00195 * 9 7 5 13 13 C 1.52999 * 109.47429 * 120.00441 * 2 1 3 14 14 N 1.46895 * 109.46872 * 295.00116 * 13 2 1 15 15 C 1.46899 * 110.99767 * 180.02562 * 14 13 2 16 16 H 1.09006 * 109.45522 * 324.96422 * 15 14 13 17 17 C 1.53129 * 109.44016 * 84.88519 * 15 14 13 18 18 C 1.53421 * 109.57145 * 190.04622 * 17 15 14 19 19 C 1.50601 * 108.36482 * 310.24247 * 18 17 15 20 20 N 1.32916 * 129.15801 * 196.47484 * 19 18 17 21 21 N 1.29018 * 108.63026 * 179.86858 * 20 19 18 22 22 N 1.29106 * 110.26254 * 0.03207 * 21 20 19 23 23 C 1.46505 * 126.01010 * 180.02562 * 22 21 20 24 24 C 1.34400 * 107.98589 * 0.05880 * 22 21 20 25 25 C 1.50532 * 129.25360 * 179.74982 * 24 22 21 26 26 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46846 * 299.99379 * 1 2 3 28 28 H 1.08998 * 109.47357 * 59.99310 * 1 2 3 29 29 H 1.09005 * 109.47301 * 184.99809 * 4 2 1 30 30 H 1.08997 * 109.47238 * 304.99405 * 4 2 1 31 31 H 0.97003 * 119.99678 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46883 * 174.99599 * 13 2 1 33 33 H 1.09002 * 109.46563 * 54.99953 * 13 2 1 34 34 H 1.00892 * 111.00653 * 56.04705 * 14 13 2 35 35 H 1.08993 * 109.42490 * 70.03326 * 17 15 14 36 36 H 1.09003 * 109.48295 * 310.09098 * 17 15 14 37 37 H 1.09002 * 109.69097 * 190.51123 * 18 17 15 38 38 H 1.09006 * 109.69218 * 69.97089 * 18 17 15 39 39 H 1.09000 * 109.47270 * 90.02088 * 23 22 21 40 40 H 1.09000 * 109.47087 * 210.02416 * 23 22 21 41 41 H 1.08998 * 109.46805 * 330.01809 * 23 22 21 42 42 H 1.08997 * 109.69437 * 316.24660 * 25 24 22 43 43 H 1.08997 * 109.69659 * 76.83741 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6411 0.0573 -2.4766 6 1 1.0805 0.9748 -2.3756 7 6 1.9930 -0.4013 -3.7284 8 7 2.6762 -1.5184 -3.8514 9 14 1.4980 0.5631 -5.2496 10 1 0.7408 1.7741 -4.8433 11 1 2.7158 0.9687 -5.9964 12 1 0.6447 -0.2865 -6.1185 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0372 2.4456 15 6 2.1260 -0.6268 3.6670 16 1 2.0820 -1.7077 3.5331 17 6 3.5716 -0.2065 3.9468 18 6 4.1532 -1.0798 5.0662 19 6 3.1800 -1.0883 6.2155 20 7 3.3769 -1.4496 7.4794 21 7 2.2724 -1.2972 8.1284 22 7 1.3505 -0.8494 7.3433 23 6 -0.0335 -0.5527 7.7213 24 6 1.8834 -0.7039 6.1181 25 6 1.2346 -0.2214 4.8484 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.1263 -0.7993 -1.2058 30 1 1.6054 -1.7196 -1.2953 31 1 2.9233 -1.8412 -4.7321 32 1 3.1264 -0.7996 1.2054 33 1 1.6055 -1.7199 1.2949 34 1 0.6530 0.1791 2.4753 35 1 3.5922 0.8390 4.2542 36 1 4.1678 -0.3307 3.0427 37 1 5.1070 -0.6676 5.3955 38 1 4.2989 -2.0964 4.7008 39 1 -0.1067 0.4849 8.0472 40 1 -0.6864 -0.7108 6.8629 41 1 -0.3371 -1.2115 8.5348 42 1 0.2516 -0.6798 4.7410 43 1 1.1336 0.8635 4.8768 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897347296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:06 Heat of formation + Delta-G solvation = 74.030062 kcal Electronic energy + Delta-G solvation = -21476.528911 eV Core-core repulsion = 18364.820689 eV Total energy + Delta-G solvation = -3111.708223 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.57392 -38.37373 -35.95931 -35.15503 -33.25169 -31.78877 -30.74714 -28.97162 -28.02317 -26.81698 -25.24859 -24.08485 -22.77300 -21.91249 -21.32357 -19.77038 -18.91871 -17.30810 -16.99604 -16.47206 -15.67034 -15.34083 -14.59866 -14.31830 -14.17309 -14.12314 -13.95002 -13.57906 -13.39442 -13.06956 -12.74843 -12.67232 -12.28482 -11.85312 -11.80999 -11.56608 -11.46402 -11.28384 -10.99660 -10.90073 -10.72802 -10.60029 -10.35002 -10.20642 -10.14799 -9.74886 -9.18705 -9.01679 -8.96732 -8.34799 -8.25927 -5.99188 -4.00360 1.35545 2.08469 2.38615 3.30935 3.38825 3.42371 3.83086 4.13341 4.31522 4.45653 4.48703 4.55248 4.61574 4.78732 4.86154 4.98136 5.16697 5.24043 5.33160 5.36843 5.48047 5.60808 5.65011 5.71265 5.79799 5.93628 5.97961 6.00462 6.12313 6.23396 6.24605 6.34489 6.42475 6.52239 6.89259 7.07002 7.13769 7.28704 7.55690 7.68415 7.83676 8.01056 8.33067 8.44596 9.06318 9.63282 11.12330 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.040711 B = 0.002906 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.608973 B = 9631.837102 C =10091.401882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.684 5.684 15 C 0.093 3.907 16 H 0.049 0.951 17 C -0.107 4.107 18 C -0.035 4.035 19 C -0.015 4.015 20 N -0.263 5.263 21 N -0.102 5.102 22 N -0.287 5.287 23 C 0.081 3.919 24 C -0.014 4.014 25 C -0.046 4.046 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.063 0.937 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.339 0.661 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.226 2.275 20.669 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.316 5.316 15 C -0.018 4.018 16 H 0.067 0.933 17 C -0.146 4.146 18 C -0.074 4.074 19 C -0.155 4.155 20 N -0.128 5.128 21 N -0.079 5.079 22 N -0.079 5.079 23 C -0.061 4.061 24 C -0.148 4.148 25 C -0.086 4.086 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.158 0.842 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.317 2.136 22.000 22.521 hybrid contribution -1.371 -0.010 -1.763 2.233 sum -5.688 2.126 20.236 21.128 Atomic orbital electron populations 1.21746 0.96751 1.00390 1.00256 1.21227 0.94805 1.00161 0.94132 0.91547 1.19113 0.96185 0.95347 0.90355 1.21269 1.34591 1.08257 0.90974 0.92523 1.25023 0.95336 0.95092 0.99120 1.69975 1.39107 1.21244 1.23286 0.86581 0.78276 0.80109 0.83312 1.19761 1.21072 1.21145 1.22209 1.00627 0.94328 0.89235 1.60609 1.19428 1.50538 1.00989 1.21487 0.94663 0.96897 0.88723 0.93286 1.21643 0.95137 0.99791 0.98038 1.20019 0.95993 1.01512 0.89907 1.21789 0.94200 1.04985 0.94486 1.74797 1.16073 1.17516 1.04390 1.78563 0.92538 1.18072 1.18773 1.46823 1.11780 1.42359 1.06924 1.22259 0.76094 1.03876 1.03848 1.21753 0.95430 1.08540 0.89117 1.20343 0.98151 1.02073 0.88002 0.94062 0.95029 0.91840 0.96609 0.96786 0.93139 0.91168 0.95698 0.84203 0.90956 0.89922 0.89578 0.89934 0.88968 0.88343 0.88013 0.90411 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.77 37.16 0.33 -2.00 16 2 C -0.08 -1.62 2.54 -90.62 -0.23 -1.85 16 3 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.02 8.41 -34.44 -0.29 -14.31 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.06 1.02 4.93 -3.83 -0.02 1.00 16 14 N -0.68 -8.61 6.31 -106.41 -0.67 -9.28 16 15 C 0.09 1.00 2.47 -67.42 -0.17 0.84 16 16 H 0.05 0.57 7.77 -51.93 -0.40 0.17 16 17 C -0.11 -1.15 5.45 -26.45 -0.14 -1.30 16 18 C -0.03 -0.37 6.30 -27.71 -0.17 -0.54 16 19 C -0.01 -0.18 7.11 -83.12 -0.59 -0.77 16 20 N -0.26 -3.87 12.40 33.17 0.41 -3.46 16 21 N -0.10 -1.37 13.19 60.35 0.80 -0.57 16 22 N -0.29 -2.95 3.73 -64.00 -0.24 -3.19 16 23 C 0.08 0.39 11.27 59.85 0.67 1.07 16 24 C -0.01 -0.15 6.76 -82.50 -0.56 -0.71 16 25 C -0.05 -0.40 5.24 -27.74 -0.15 -0.55 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.44 6.68 -51.93 -0.35 0.09 16 28 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.07 1.15 7.31 -51.93 -0.38 0.77 16 33 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.34 3.89 6.61 -39.30 -0.26 3.63 16 35 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.08 0.94 7.27 -51.93 -0.38 0.56 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.28 7.71 -51.93 -0.40 -0.12 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -32.64 341.94 -7.46 -40.11 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -7.09 Total: -2.13 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -1.54 Total: -17.12 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 1.03 Total: -42.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.64 -7.46 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897347296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.135 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds