Wall clock time and date at job start Tue Mar 31 2020 00:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.21525 * 2 1 4 4 C 1.54425 * 110.25434 * 237.99882 * 2 1 3 5 5 C 1.54573 * 101.67125 * 215.50186 * 4 2 1 6 6 H 1.08998 * 110.59050 * 143.68959 * 5 4 2 7 7 N 1.46901 * 110.48113 * 266.26206 * 5 4 2 8 8 C 1.46905 * 110.99870 * 201.25433 * 7 5 4 9 9 C 1.52993 * 109.47039 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47206 * 299.99787 * 9 8 7 11 11 C 1.53001 * 109.47323 * 60.00045 * 9 8 7 12 12 C 1.53004 * 109.47360 * 180.02562 * 9 8 7 13 13 C 1.50697 * 109.47387 * 179.97438 * 12 9 8 14 14 H 1.08000 * 120.00144 * 0.02562 * 13 12 9 15 15 C 1.37874 * 119.99821 * 179.97438 * 13 12 9 16 16 N 1.31510 * 120.00108 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99834 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47164 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46812 * 120.00223 * 17 15 13 20 20 H 1.48494 * 109.47320 * 240.00038 * 17 15 13 21 21 C 1.51473 * 104.22104 * 24.94669 * 5 4 2 22 22 N 1.31165 * 141.93999 * 163.56696 * 21 5 4 23 23 C 1.33152 * 109.83822 * 180.15827 * 22 21 5 24 24 N 1.30650 * 108.95232 * 359.92079 * 23 22 21 25 25 N 1.34117 * 110.05025 * 343.54982 * 21 5 4 26 26 H 1.09006 * 109.46643 * 299.53225 * 1 2 3 27 27 H 1.08995 * 109.47485 * 59.53115 * 1 2 3 28 28 H 1.08994 * 109.47300 * 179.53539 * 1 2 3 29 29 H 1.09007 * 110.99401 * 97.40340 * 4 2 1 30 30 H 1.08998 * 110.97953 * 333.59626 * 4 2 1 31 31 H 1.00901 * 111.00067 * 325.20609 * 7 5 4 32 32 H 1.09001 * 109.46798 * 300.00327 * 8 7 5 33 33 H 1.08998 * 109.46961 * 60.00043 * 8 7 5 34 34 H 1.08999 * 109.47049 * 60.00315 * 10 9 8 35 35 H 1.09005 * 109.47151 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.47171 * 300.00432 * 10 9 8 37 37 H 1.08991 * 109.46963 * 60.00286 * 11 9 8 38 38 H 1.09005 * 109.47384 * 179.97438 * 11 9 8 39 39 H 1.08999 * 109.47105 * 299.99791 * 11 9 8 40 40 H 1.09001 * 109.46514 * 300.00105 * 12 9 8 41 41 H 1.08998 * 109.46924 * 59.99625 * 12 9 8 42 42 H 0.97004 * 119.99990 * 179.97438 * 16 15 13 43 43 H 1.08006 * 125.52539 * 179.91834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0228 0.0000 4 6 2.0646 -0.7678 -1.2286 5 6 3.3290 -1.4426 -0.6497 6 1 3.4651 -2.4348 -1.0801 7 7 4.5142 -0.6101 -0.8954 8 6 5.7437 -1.4111 -0.8255 9 6 6.9537 -0.5115 -1.0853 10 6 6.8328 0.1172 -2.4750 11 6 7.0041 0.5935 -0.0283 12 6 8.2343 -1.3457 -1.0133 13 6 9.4261 -0.4598 -1.2698 14 1 9.2844 0.5930 -1.4643 15 6 10.6974 -0.9932 -1.2551 16 7 10.8699 -2.2752 -1.0177 17 14 12.1747 0.1048 -1.5738 18 1 11.7147 1.4963 -1.8128 19 1 13.0755 0.0774 -0.3934 20 1 12.9082 -0.3865 -2.7677 21 6 3.0503 -1.5428 0.8358 22 7 3.4557 -2.1531 1.9237 23 6 2.7249 -1.7560 2.9636 24 7 1.8424 -0.8842 2.5537 25 7 2.0382 -0.7287 1.1697 26 1 -0.3633 0.5066 0.8942 27 1 -0.3634 0.5211 -0.8857 28 1 -0.3633 -1.0276 -0.0083 29 1 2.3228 -0.0820 -2.0356 30 1 1.3445 -1.5128 -1.5669 31 1 4.4434 -0.1328 -1.7815 32 1 5.8300 -1.8586 0.1646 33 1 5.7076 -2.1985 -1.5783 34 1 5.9206 0.7114 -2.5268 35 1 7.6947 0.7584 -2.6599 36 1 6.7969 -0.6700 -3.2280 37 1 7.0903 0.1456 0.9616 38 1 7.8665 1.2341 -0.2131 39 1 6.0918 1.1877 -0.0801 40 1 8.3206 -1.7940 -0.0234 41 1 8.1981 -2.1327 -1.7666 42 1 11.7643 -2.6505 -1.0077 43 1 2.8426 -2.0991 3.9809 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926426586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:40 Heat of formation + Delta-G solvation = 71.167454 kcal Electronic energy + Delta-G solvation = -22201.816068 eV Core-core repulsion = 19089.983713 eV Total energy + Delta-G solvation = -3111.832355 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.42727 -39.52380 -38.21263 -35.46891 -34.16203 -32.18956 -31.46302 -29.89834 -28.75934 -27.87727 -26.58876 -25.53211 -24.22865 -23.59127 -21.55023 -21.22419 -19.51262 -18.32567 -17.98120 -16.72852 -16.61736 -16.58611 -15.93494 -15.89274 -15.58873 -15.23400 -14.79639 -14.53359 -14.29123 -13.92560 -13.75891 -13.51127 -13.23846 -13.08292 -12.86548 -12.68151 -12.65026 -12.46430 -12.39343 -12.25306 -12.14431 -12.05438 -11.82336 -11.38442 -10.94751 -10.85757 -10.76281 -10.70533 -10.50192 -10.48374 -9.50099 -8.12565 -6.19810 0.62171 1.23443 1.40730 1.42024 1.53924 1.92115 2.44628 2.66493 3.18860 3.21494 3.25836 3.51907 3.83017 4.06483 4.12331 4.17540 4.22237 4.25233 4.39372 4.45578 4.63076 4.72123 4.77016 4.83793 4.87280 4.94363 4.95917 5.09413 5.17502 5.22855 5.23240 5.42594 5.53102 5.54125 5.54379 5.61915 5.63466 5.68589 5.86354 5.90082 5.95737 6.36838 6.50813 6.96052 7.18590 7.47689 9.00103 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.030118 B = 0.003813 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.445677 B = 7341.499212 C = 7762.637795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.109 0.891 4 C -0.109 4.109 5 C 0.152 3.848 6 H 0.086 0.914 7 N -0.669 5.669 8 C 0.086 3.914 9 C -0.052 4.052 10 C -0.122 4.122 11 C -0.104 4.104 12 C 0.039 3.961 13 C -0.512 4.512 14 H 0.068 0.932 15 C -0.006 4.006 16 N -0.939 5.939 17 Si 0.956 3.044 18 H -0.259 1.259 19 H -0.286 1.286 20 H -0.280 1.280 21 C 0.260 3.740 22 N -0.573 5.573 23 C 0.190 3.810 24 N -0.328 5.328 25 N -0.388 5.388 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.059 0.941 29 H 0.146 0.854 30 H 0.121 0.879 31 H 0.366 0.634 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.015 0.985 38 H 0.040 0.960 39 H 0.066 0.934 40 H -0.025 1.025 41 H -0.011 1.011 42 H 0.259 0.741 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.807 5.543 -3.484 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.127 0.873 4 C -0.148 4.148 5 C 0.039 3.961 6 H 0.104 0.896 7 N -0.306 5.306 8 C -0.043 4.043 9 C -0.053 4.053 10 C -0.179 4.179 11 C -0.162 4.162 12 C 0.002 3.998 13 C -0.550 4.550 14 H 0.086 0.914 15 C -0.202 4.202 16 N -0.580 5.580 17 Si 0.782 3.218 18 H -0.183 1.183 19 H -0.212 1.212 20 H -0.206 1.206 21 C -0.018 4.018 22 N -0.302 5.302 23 C -0.112 4.112 24 N -0.157 5.157 25 N -0.178 5.178 26 H 0.071 0.929 27 H 0.132 0.868 28 H 0.078 0.922 29 H 0.164 0.836 30 H 0.139 0.861 31 H 0.191 0.809 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.059 0.941 39 H 0.085 0.915 40 H -0.007 1.007 41 H 0.007 0.993 42 H 0.068 0.932 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -23.078 5.912 -2.304 23.934 hybrid contribution 1.503 -0.659 -0.168 1.650 sum -21.575 5.252 -2.472 22.342 Atomic orbital electron populations 1.22044 0.91081 1.03263 1.04353 1.22487 0.97209 0.96657 0.79261 0.87297 1.23276 0.94048 1.01090 0.96362 1.20759 0.92926 0.98823 0.83634 0.89631 1.60163 0.99628 1.29921 1.40873 1.21823 0.88823 0.94137 0.99527 1.20468 0.93095 0.95339 0.96381 1.21689 1.01476 1.00075 0.94635 1.21479 1.00476 0.97730 0.96468 1.19005 0.92747 0.94304 0.93762 1.21652 0.91626 0.95665 1.46093 0.91419 1.25936 1.02359 0.96209 0.95709 1.70126 1.22575 1.13583 1.51723 0.85524 0.79267 0.79547 0.77492 1.18279 1.21202 1.20612 1.25636 0.88517 0.89783 0.97896 1.70065 1.30851 1.31101 0.98233 1.26618 0.90230 0.93705 1.00639 1.77831 1.26097 1.23471 0.88262 1.51955 1.27505 1.32693 1.05693 0.92864 0.86759 0.92227 0.83615 0.86077 0.80879 0.93927 0.94829 0.90554 0.93590 0.93652 0.96594 0.94128 0.91477 1.00681 0.99308 0.93216 0.74016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.48 71.98 0.68 -0.91 16 2 C 0.14 2.13 4.13 45.40 0.19 2.31 16 3 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.11 -1.05 6.35 31.61 0.20 -0.84 16 5 C 0.15 3.09 3.24 44.95 0.15 3.23 16 6 H 0.09 1.72 7.87 -2.39 -0.02 1.70 16 7 N -0.67 -15.80 5.55 -491.39 -2.73 -18.53 16 8 C 0.09 2.87 4.48 86.30 0.39 3.26 16 9 C -0.05 -2.03 0.60 -52.18 -0.03 -2.06 16 10 C -0.12 -3.94 7.89 71.98 0.57 -3.37 16 11 C -0.10 -4.06 8.07 71.98 0.58 -3.48 16 12 C 0.04 2.06 4.04 29.85 0.12 2.18 16 13 C -0.51 -28.42 7.65 25.60 0.20 -28.22 16 14 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 15 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 16 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 17 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 C 0.26 7.46 8.18 138.47 1.13 8.59 16 22 N -0.57 -19.47 11.20 -191.10 -2.14 -21.61 16 23 C 0.19 5.56 13.03 180.81 2.36 7.91 16 24 N -0.33 -9.67 12.80 -61.33 -0.79 -10.46 16 25 N -0.39 -9.87 4.53 -314.12 -1.42 -11.29 16 26 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 29 H 0.15 0.44 7.61 -2.38 -0.02 0.42 16 30 H 0.12 0.67 7.91 -2.39 -0.02 0.65 16 31 H 0.37 6.38 6.17 -89.69 -0.55 5.83 16 32 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 33 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 34 H 0.08 1.80 6.57 -2.39 -0.02 1.78 16 35 H 0.04 1.68 6.62 -2.38 -0.02 1.66 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.04 1.67 6.62 -2.38 -0.02 1.65 16 39 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 40 H -0.03 -1.51 8.14 -2.39 -0.02 -1.53 16 41 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.24 5.11 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -77.40 341.14 2.67 -74.73 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.44 Total: 9.55 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 6.99 Total: -11.25 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -6.79 Total: -119.72 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -77.40 2.67 -74.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.899 kcal (2) G-P(sol) polarization free energy of solvation -77.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds