Wall clock time and date at job start Tue Mar 31 2020 00:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.27967 * 2 1 4 4 C 1.54429 * 110.24262 * 121.97106 * 2 1 3 5 5 C 1.54570 * 101.66872 * 144.50504 * 4 2 1 6 6 H 1.08999 * 110.48100 * 216.35602 * 5 4 2 7 7 N 1.46896 * 110.59624 * 93.77681 * 5 4 2 8 8 C 1.46904 * 110.99890 * 158.67956 * 7 5 4 9 9 C 1.53003 * 109.46731 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47405 * 300.00069 * 9 8 7 11 11 C 1.52995 * 109.47066 * 60.00752 * 9 8 7 12 12 C 1.53008 * 109.46561 * 180.02562 * 9 8 7 13 13 C 1.50703 * 109.46561 * 180.02562 * 12 9 8 14 14 H 1.07995 * 120.00374 * 359.97438 * 13 12 9 15 15 C 1.37876 * 119.99383 * 180.02562 * 13 12 9 16 16 N 1.31519 * 119.99687 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00435 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47283 * 90.00312 * 17 15 13 19 19 H 1.48499 * 109.47149 * 210.00254 * 17 15 13 20 20 H 1.48495 * 109.47095 * 330.00111 * 17 15 13 21 21 C 1.51483 * 104.21860 * 335.03605 * 5 4 2 22 22 N 1.31153 * 141.94127 * 196.50249 * 21 5 4 23 23 C 1.33166 * 109.83987 * 179.79245 * 22 21 5 24 24 N 1.30654 * 108.94370 * 0.34337 * 23 22 21 25 25 N 1.34113 * 110.04455 * 16.46290 * 21 5 4 26 26 H 1.08999 * 109.47346 * 298.03501 * 1 2 3 27 27 H 1.09004 * 109.47168 * 58.03023 * 1 2 3 28 28 H 1.09004 * 109.47319 * 178.02910 * 1 2 3 29 29 H 1.08992 * 110.98734 * 26.40573 * 4 2 1 30 30 H 1.09001 * 110.98294 * 262.59910 * 4 2 1 31 31 H 1.00901 * 111.00334 * 282.63298 * 7 5 4 32 32 H 1.08995 * 109.47465 * 300.00366 * 8 7 5 33 33 H 1.09002 * 109.46763 * 60.00415 * 8 7 5 34 34 H 1.08998 * 109.47014 * 60.00882 * 10 9 8 35 35 H 1.09008 * 109.47004 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47655 * 300.00283 * 10 9 8 37 37 H 1.08999 * 109.47555 * 59.99395 * 11 9 8 38 38 H 1.08999 * 109.47209 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47288 * 299.99671 * 11 9 8 40 40 H 1.08999 * 109.47139 * 300.00041 * 12 9 8 41 41 H 1.09002 * 109.47015 * 60.00625 * 12 9 8 42 42 H 0.97001 * 120.00275 * 179.97438 * 16 15 13 43 43 H 1.08002 * 125.52523 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0643 -0.7672 1.2291 5 6 3.3288 -1.4423 0.6508 6 1 3.4626 -2.4343 1.0822 7 7 4.5157 -0.6122 0.8958 8 6 5.7435 -1.4159 0.8271 9 6 6.9554 -0.5186 1.0862 10 6 7.0084 0.5851 0.0279 11 6 6.8356 0.1118 2.4751 12 6 8.2342 -1.3556 1.0140 13 6 9.4279 -0.4719 1.2698 14 1 9.2885 0.5813 1.4639 15 6 10.6981 -1.0079 1.2549 16 7 11.7399 -0.2367 1.4776 17 14 10.9394 -2.8294 0.9184 18 1 11.0997 -3.0461 -0.5419 19 1 12.1547 -3.3067 1.6259 20 1 9.7559 -3.5835 1.4038 21 6 3.0501 -1.5436 -0.8347 22 7 3.4550 -2.1552 -1.9220 23 6 2.7239 -1.7591 -2.9622 24 7 1.8456 -0.8822 -2.5539 25 7 2.0382 -0.7295 -1.1691 26 1 -0.3634 0.4830 0.9071 27 1 -0.3634 0.5441 -0.8718 28 1 -0.3634 -1.0271 -0.0353 29 1 1.3442 -1.5120 1.5677 30 1 2.3223 -0.0809 2.0357 31 1 4.5543 0.1628 0.2508 32 1 5.7055 -2.2024 1.5807 33 1 5.8290 -1.8646 -0.1626 34 1 6.0975 1.1814 0.0790 35 1 7.8722 1.2240 0.2123 36 1 7.0938 0.1360 -0.9616 37 1 6.7979 -0.6745 3.2290 38 1 7.6992 0.7507 2.6598 39 1 5.9246 0.7081 2.5261 40 1 8.1967 -2.1421 1.7677 41 1 8.3194 -1.8043 0.0243 42 1 12.6336 -0.6138 1.4675 43 1 2.8417 -2.1028 -3.9792 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926426588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:46 Heat of formation + Delta-G solvation = 93.758454 kcal Electronic energy + Delta-G solvation = -22273.886185 eV Core-core repulsion = 19163.033450 eV Total energy + Delta-G solvation = -3110.852735 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.63036 -38.42576 -37.11239 -34.23351 -32.26426 -31.15140 -30.68835 -29.03827 -27.53062 -26.41274 -25.35851 -24.49983 -22.71475 -21.93367 -20.79347 -20.57119 -17.91455 -17.17155 -16.79920 -15.98561 -15.63711 -15.16554 -14.83946 -14.68212 -14.15367 -13.99575 -13.55773 -13.39445 -13.06089 -12.77019 -12.63334 -12.53972 -12.22378 -12.03439 -11.77647 -11.67281 -11.34456 -11.08922 -10.99090 -10.87005 -10.50521 -10.35807 -10.03253 -9.88541 -9.82442 -9.75079 -9.65203 -9.31192 -8.91251 -8.54128 -8.47599 -5.98334 -3.94627 1.46881 1.93021 2.83584 3.35330 3.38971 3.42774 3.46722 3.94446 4.05269 4.20448 4.50746 4.55140 4.66149 4.79868 5.04306 5.09392 5.15542 5.29488 5.34942 5.47420 5.50200 5.53426 5.64728 5.68262 5.84411 6.15898 6.18753 6.26798 6.34752 6.37329 6.47047 6.54327 6.64083 6.76841 6.92863 7.08049 7.11289 7.21573 7.25945 7.35264 7.49883 7.86580 8.04297 8.60776 9.07085 9.64928 11.14702 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.027227 B = 0.004108 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.149839 B = 6813.671942 C = 7282.281580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.102 0.898 4 C -0.117 4.117 5 C 0.157 3.843 6 H 0.115 0.885 7 N -0.657 5.657 8 C 0.061 3.939 9 C -0.047 4.047 10 C -0.130 4.130 11 C -0.118 4.118 12 C -0.004 4.004 13 C -0.507 4.507 14 H 0.077 0.923 15 C 0.065 3.935 16 N -0.906 5.906 17 Si 0.875 3.125 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.266 1.266 21 C 0.224 3.776 22 N -0.526 5.526 23 C 0.197 3.803 24 N -0.303 5.303 25 N -0.391 5.391 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.344 0.656 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.016 0.984 41 H 0.009 0.991 42 H 0.261 0.739 43 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.975 -0.778 -1.175 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 H 0.120 0.880 4 C -0.156 4.156 5 C 0.043 3.957 6 H 0.133 0.867 7 N -0.288 5.288 8 C -0.067 4.067 9 C -0.048 4.048 10 C -0.188 4.188 11 C -0.176 4.176 12 C -0.042 4.042 13 C -0.545 4.545 14 H 0.095 0.905 15 C -0.135 4.135 16 N -0.546 5.546 17 Si 0.703 3.297 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.190 1.190 21 C -0.056 4.056 22 N -0.254 5.254 23 C -0.106 4.106 24 N -0.130 5.130 25 N -0.182 5.182 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.140 0.860 31 H 0.164 0.836 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -23.228 -0.574 -1.023 23.258 hybrid contribution 0.423 -1.132 -1.360 1.820 sum -22.805 -1.706 -2.383 22.992 Atomic orbital electron populations 1.22041 0.92476 1.03344 1.03507 1.22205 0.96408 0.96399 0.80390 0.88001 1.23053 0.95366 1.00699 0.96489 1.21036 0.92578 0.99874 0.82239 0.86734 1.60950 1.01355 1.10733 1.55759 1.22314 0.88157 0.95877 1.00342 1.20421 0.93516 0.95125 0.95732 1.21785 1.00517 0.98542 0.97939 1.21629 1.00553 1.00101 0.95288 1.19622 0.92850 0.95614 0.96080 1.21125 0.89120 0.96723 1.47559 0.90466 1.25009 0.96158 0.97443 0.94936 1.69911 0.98454 1.35462 1.50736 0.86851 0.77672 0.86620 0.78562 1.20473 1.21585 1.19040 1.26524 0.89264 0.90882 0.98951 1.70165 1.29714 1.28507 0.96980 1.26140 0.90711 0.93872 0.99835 1.77964 1.25153 1.22847 0.87058 1.51744 1.27565 1.33160 1.05718 0.89983 0.91403 0.91720 0.88692 0.86047 0.83584 0.90936 0.94293 0.95016 0.91026 0.94059 0.94013 0.92039 0.93788 0.96586 0.97235 0.92902 0.76380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.48 37.16 0.35 -0.66 16 2 C 0.15 1.21 4.13 -66.98 -0.28 0.93 16 3 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -0.80 6.40 -25.16 -0.16 -0.96 16 5 C 0.16 1.65 3.23 -67.66 -0.22 1.43 16 6 H 0.11 1.17 7.87 -51.93 -0.41 0.76 16 7 N -0.66 -8.14 5.51 -106.66 -0.59 -8.73 16 8 C 0.06 0.96 4.48 -3.82 -0.02 0.95 16 9 C -0.05 -0.89 0.60 -154.51 -0.09 -0.98 16 10 C -0.13 -2.41 7.89 37.15 0.29 -2.11 16 11 C -0.12 -2.13 8.06 37.15 0.30 -1.83 16 12 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 13 C -0.51 -13.92 8.20 -34.44 -0.28 -14.20 16 14 H 0.08 2.25 5.92 -52.49 -0.31 1.94 16 15 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 16 N -0.91 -27.76 13.96 55.43 0.77 -26.99 16 17 Si 0.88 21.86 27.47 -169.99 -4.67 17.20 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 21 C 0.22 2.96 7.93 -155.32 -1.23 1.73 16 22 N -0.53 -7.99 11.20 -11.75 -0.13 -8.12 16 23 C 0.20 2.61 13.03 -91.93 -1.20 1.41 16 24 N -0.30 -4.17 12.80 29.27 0.37 -3.79 16 25 N -0.39 -4.76 4.53 -50.64 -0.23 -4.99 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.50 7.91 -51.93 -0.41 0.09 16 30 H 0.12 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.34 4.49 6.53 -39.29 -0.26 4.23 16 32 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 35 H 0.07 1.49 6.62 -51.92 -0.34 1.14 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 39 H 0.04 0.68 7.60 -51.93 -0.39 0.29 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 41 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.22 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -32.87 338.14 -9.05 -41.93 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.96 Total: 1.10 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.72 Total: -12.70 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.20 Total: -52.62 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.87 -9.05 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.688 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds