Wall clock time and date at job start Tue Mar 31 2020 00:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.27967 * 2 1 4 4 C 1.54429 * 110.24262 * 121.97106 * 2 1 3 5 5 C 1.54570 * 101.66872 * 144.50504 * 4 2 1 6 6 H 1.08999 * 110.48100 * 216.35602 * 5 4 2 7 7 N 1.46896 * 110.59624 * 93.77681 * 5 4 2 8 8 C 1.46904 * 110.99890 * 158.67956 * 7 5 4 9 9 C 1.53003 * 109.46731 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47405 * 300.00069 * 9 8 7 11 11 C 1.52995 * 109.47066 * 60.00752 * 9 8 7 12 12 C 1.53008 * 109.46561 * 180.02562 * 9 8 7 13 13 C 1.50703 * 109.46561 * 180.02562 * 12 9 8 14 14 H 1.07995 * 120.00374 * 359.97438 * 13 12 9 15 15 C 1.37876 * 119.99383 * 180.02562 * 13 12 9 16 16 N 1.31519 * 119.99687 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00435 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47283 * 90.00312 * 17 15 13 19 19 H 1.48499 * 109.47149 * 210.00254 * 17 15 13 20 20 H 1.48495 * 109.47095 * 330.00111 * 17 15 13 21 21 C 1.51483 * 104.21860 * 335.03605 * 5 4 2 22 22 N 1.31153 * 141.94127 * 196.50249 * 21 5 4 23 23 C 1.33166 * 109.83987 * 179.79245 * 22 21 5 24 24 N 1.30654 * 108.94370 * 0.34337 * 23 22 21 25 25 N 1.34113 * 110.04455 * 16.46290 * 21 5 4 26 26 H 1.08999 * 109.47346 * 298.03501 * 1 2 3 27 27 H 1.09004 * 109.47168 * 58.03023 * 1 2 3 28 28 H 1.09004 * 109.47319 * 178.02910 * 1 2 3 29 29 H 1.08992 * 110.98734 * 26.40573 * 4 2 1 30 30 H 1.09001 * 110.98294 * 262.59910 * 4 2 1 31 31 H 1.00901 * 111.00334 * 282.63298 * 7 5 4 32 32 H 1.08995 * 109.47465 * 300.00366 * 8 7 5 33 33 H 1.09002 * 109.46763 * 60.00415 * 8 7 5 34 34 H 1.08998 * 109.47014 * 60.00882 * 10 9 8 35 35 H 1.09008 * 109.47004 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47655 * 300.00283 * 10 9 8 37 37 H 1.08999 * 109.47555 * 59.99395 * 11 9 8 38 38 H 1.08999 * 109.47209 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47288 * 299.99671 * 11 9 8 40 40 H 1.08999 * 109.47139 * 300.00041 * 12 9 8 41 41 H 1.09002 * 109.47015 * 60.00625 * 12 9 8 42 42 H 0.97001 * 120.00275 * 179.97438 * 16 15 13 43 43 H 1.08002 * 125.52523 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0643 -0.7672 1.2291 5 6 3.3288 -1.4423 0.6508 6 1 3.4626 -2.4343 1.0822 7 7 4.5157 -0.6122 0.8958 8 6 5.7435 -1.4159 0.8271 9 6 6.9554 -0.5186 1.0862 10 6 7.0084 0.5851 0.0279 11 6 6.8356 0.1118 2.4751 12 6 8.2342 -1.3556 1.0140 13 6 9.4279 -0.4719 1.2698 14 1 9.2885 0.5813 1.4639 15 6 10.6981 -1.0079 1.2549 16 7 11.7399 -0.2367 1.4776 17 14 10.9394 -2.8294 0.9184 18 1 11.0997 -3.0461 -0.5419 19 1 12.1547 -3.3067 1.6259 20 1 9.7559 -3.5835 1.4038 21 6 3.0501 -1.5436 -0.8347 22 7 3.4550 -2.1552 -1.9220 23 6 2.7239 -1.7591 -2.9622 24 7 1.8456 -0.8822 -2.5539 25 7 2.0382 -0.7295 -1.1691 26 1 -0.3634 0.4830 0.9071 27 1 -0.3634 0.5441 -0.8718 28 1 -0.3634 -1.0271 -0.0353 29 1 1.3442 -1.5120 1.5677 30 1 2.3223 -0.0809 2.0357 31 1 4.5543 0.1628 0.2508 32 1 5.7055 -2.2024 1.5807 33 1 5.8290 -1.8646 -0.1626 34 1 6.0975 1.1814 0.0790 35 1 7.8722 1.2240 0.2123 36 1 7.0938 0.1360 -0.9616 37 1 6.7979 -0.6745 3.2290 38 1 7.6992 0.7507 2.6598 39 1 5.9246 0.7081 2.5261 40 1 8.1967 -2.1421 1.7677 41 1 8.3194 -1.8043 0.0243 42 1 12.6336 -0.6138 1.4675 43 1 2.8417 -2.1028 -3.9792 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926426588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:45 Heat of formation + Delta-G solvation = 72.800578 kcal Electronic energy + Delta-G solvation = -22274.794987 eV Core-core repulsion = 19163.033450 eV Total energy + Delta-G solvation = -3111.761537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.53512 -39.54223 -38.25682 -35.45436 -34.19695 -32.22701 -31.47641 -30.13885 -29.17468 -27.92791 -26.55828 -25.45384 -23.91637 -23.37556 -21.58678 -21.45238 -19.47859 -18.85944 -17.99089 -17.00944 -16.57750 -16.36077 -15.94705 -15.84817 -15.51485 -15.29447 -14.90113 -14.60176 -14.31391 -14.08536 -13.74714 -13.63994 -13.31211 -13.15956 -12.81643 -12.80071 -12.59589 -12.42783 -12.39567 -12.20840 -12.08205 -12.00448 -11.69944 -11.39557 -11.02731 -11.00707 -10.84521 -10.80438 -10.68909 -10.59388 -9.62887 -8.20861 -6.20759 0.53081 1.15978 1.36995 1.38331 1.49409 1.85469 2.40506 2.58307 3.04459 3.14556 3.33296 3.58615 3.84420 4.00831 4.06739 4.12358 4.21882 4.23880 4.29299 4.42193 4.65807 4.72204 4.74189 4.80185 4.91175 4.95076 5.02206 5.04577 5.11051 5.15941 5.20402 5.35315 5.37267 5.46857 5.47252 5.54506 5.61468 5.62751 5.76499 5.81901 5.89154 6.19842 6.42341 6.86492 7.09762 7.41875 8.95249 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.027227 B = 0.004108 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.149839 B = 6813.671942 C = 7282.281580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.136 3.864 3 H 0.110 0.890 4 C -0.099 4.099 5 C 0.155 3.845 6 H 0.122 0.878 7 N -0.644 5.644 8 C 0.076 3.924 9 C -0.046 4.046 10 C -0.123 4.123 11 C -0.109 4.109 12 C -0.003 4.003 13 C -0.502 4.502 14 H 0.046 0.954 15 C 0.002 3.998 16 N -0.954 5.954 17 Si 0.937 3.063 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.247 1.247 21 C 0.211 3.789 22 N -0.565 5.565 23 C 0.189 3.811 24 N -0.326 5.326 25 N -0.389 5.389 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.143 0.857 31 H 0.342 0.658 32 H 0.082 0.918 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.031 0.969 37 H 0.045 0.955 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.018 0.982 41 H 0.004 0.996 42 H 0.262 0.738 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.679 -1.665 -0.250 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.036 3.964 3 H 0.128 0.872 4 C -0.138 4.138 5 C 0.041 3.959 6 H 0.140 0.860 7 N -0.274 5.274 8 C -0.053 4.053 9 C -0.047 4.047 10 C -0.181 4.181 11 C -0.166 4.166 12 C -0.041 4.041 13 C -0.540 4.540 14 H 0.064 0.936 15 C -0.193 4.193 16 N -0.596 5.596 17 Si 0.762 3.238 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.170 1.170 21 C -0.069 4.069 22 N -0.294 5.294 23 C -0.113 4.113 24 N -0.154 5.154 25 N -0.180 5.180 26 H 0.131 0.869 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.100 0.900 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.037 0.963 41 H 0.022 0.978 42 H 0.071 0.929 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -25.975 -1.451 -0.083 26.016 hybrid contribution 1.213 -0.753 -1.656 2.187 sum -24.762 -2.203 -1.739 24.920 Atomic orbital electron populations 1.22015 0.91089 1.03108 1.04424 1.22645 0.97614 0.96689 0.79466 0.87230 1.23124 0.93542 1.01157 0.95985 1.21317 0.93086 1.00474 0.80984 0.86040 1.60926 1.00728 1.10329 1.55462 1.21995 0.88229 0.95429 0.99616 1.20335 0.92989 0.95040 0.96316 1.21687 1.00651 0.98344 0.97369 1.21524 1.00434 0.99925 0.94729 1.19594 0.93530 0.95498 0.95491 1.21428 0.90719 0.96064 1.45815 0.93563 1.25886 0.96034 1.02145 0.95264 1.70059 0.99005 1.37633 1.52925 0.85847 0.78223 0.81238 0.78469 1.20142 1.21309 1.17049 1.26968 0.89468 0.90809 0.99627 1.70119 1.31087 1.30059 0.98156 1.26688 0.90240 0.93608 1.00746 1.77874 1.25804 1.23374 0.88362 1.52056 1.27291 1.32961 1.05670 0.86896 0.92799 0.92306 0.86401 0.83903 0.83865 0.89961 0.96044 0.91837 0.94241 0.94964 0.93557 0.95461 0.90769 0.96339 0.97813 0.92921 0.73975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.48 71.98 0.68 -0.79 16 2 C 0.14 1.80 4.13 45.40 0.19 1.99 16 3 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 4 C -0.10 -0.93 6.40 31.61 0.20 -0.73 16 5 C 0.16 2.78 3.23 44.95 0.15 2.92 16 6 H 0.12 2.06 7.87 -2.39 -0.02 2.04 16 7 N -0.64 -13.97 5.51 -491.37 -2.71 -16.68 16 8 C 0.08 2.23 4.48 86.30 0.39 2.61 16 9 C -0.05 -1.69 0.60 -52.18 -0.03 -1.72 16 10 C -0.12 -4.50 7.89 71.98 0.57 -3.94 16 11 C -0.11 -3.76 8.06 71.98 0.58 -3.18 16 12 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 13 C -0.50 -28.19 8.20 25.60 0.21 -27.98 16 14 H 0.05 2.83 5.92 -2.91 -0.02 2.81 16 15 C 0.00 0.14 5.47 84.65 0.46 0.61 16 16 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 17 Si 0.94 45.20 27.47 68.60 1.88 47.08 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 21 C 0.21 5.21 7.93 138.48 1.10 6.31 16 22 N -0.57 -16.72 11.20 -191.09 -2.14 -18.86 16 23 C 0.19 4.89 13.03 180.81 2.36 7.24 16 24 N -0.33 -8.68 12.80 -61.32 -0.79 -9.46 16 25 N -0.39 -8.74 4.53 -314.12 -1.42 -10.16 16 26 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.12 0.65 7.91 -2.39 -0.02 0.63 16 30 H 0.14 0.83 8.09 -2.39 -0.02 0.81 16 31 H 0.34 7.90 6.53 -89.69 -0.59 7.31 16 32 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 33 H 0.02 0.71 8.10 -2.39 -0.02 0.69 16 34 H 0.06 1.88 6.57 -2.39 -0.02 1.87 16 35 H 0.04 1.68 6.62 -2.38 -0.02 1.66 16 36 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.03 1.11 6.62 -2.39 -0.02 1.09 16 39 H 0.07 2.10 7.60 -2.39 -0.02 2.08 16 40 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 41 H 0.00 0.17 7.57 -2.39 -0.02 0.15 16 42 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.24 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -73.73 338.14 2.42 -71.31 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.35 Total: 13.38 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 6.94 Total: -16.71 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -6.76 Total: -115.05 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -73.73 2.42 -71.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.108 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds