Wall clock time and date at job start Tue Mar 31 2020 00:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36738 * 127.13766 * 2 1 4 4 C 1.50696 * 126.35188 * 0.03119 * 3 2 1 5 5 C 1.52997 * 109.47425 * 270.25867 * 4 3 2 6 6 C 1.52997 * 109.47358 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47437 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99754 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00196 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99855 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 119.99888 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47107 * 89.99941 * 11 9 7 13 13 H 1.48501 * 109.47234 * 209.99740 * 11 9 7 14 14 H 1.48501 * 109.47418 * 330.00287 * 11 9 7 15 15 N 1.30298 * 107.30222 * 180.22648 * 3 2 1 16 16 N 1.28525 * 110.05622 * 359.77492 * 15 3 2 17 17 C 1.31215 * 109.85895 * 359.97438 * 16 15 3 18 18 N 1.38587 * 126.47163 * 179.97438 * 17 16 15 19 19 C 1.46846 * 110.99818 * 124.23622 * 18 17 16 20 20 C 1.53040 * 109.51964 * 174.15932 * 19 18 17 21 21 C 1.53119 * 109.28089 * 59.17912 * 20 19 18 22 22 C 1.53124 * 109.15841 * 302.34776 * 21 20 19 23 23 C 1.46846 * 110.99996 * 0.02562 * 18 17 16 24 24 H 1.09001 * 109.47331 * 270.15671 * 1 2 3 25 25 H 1.09005 * 109.47104 * 30.15480 * 1 2 3 26 26 H 1.08997 * 109.47476 * 150.15348 * 1 2 3 27 27 H 1.09004 * 109.46555 * 30.25503 * 4 3 2 28 28 H 1.08995 * 109.47513 * 150.24961 * 4 3 2 29 29 H 1.09004 * 109.46957 * 299.99390 * 5 4 3 30 30 H 1.08997 * 109.47618 * 59.99629 * 5 4 3 31 31 H 1.08996 * 109.47486 * 299.99987 * 6 5 4 32 32 H 1.09007 * 109.47024 * 59.99903 * 6 5 4 33 33 H 0.97000 * 119.99972 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.46231 * 294.17678 * 19 18 17 35 35 H 1.09004 * 109.46418 * 54.14518 * 19 18 17 36 36 H 1.09004 * 109.50602 * 299.23671 * 20 19 18 37 37 H 1.08998 * 109.50366 * 179.12192 * 20 19 18 38 38 H 1.08998 * 109.52394 * 182.44064 * 21 20 19 39 39 H 1.09003 * 109.56984 * 62.28008 * 21 20 19 40 40 H 1.08999 * 109.49853 * 297.70868 * 22 21 20 41 41 H 1.08994 * 109.53481 * 177.61659 * 22 21 20 42 42 H 1.09001 * 109.45990 * 305.85678 * 23 18 17 43 43 H 1.08999 * 109.46398 * 65.83601 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8622 2.5349 0.0007 5 6 1.7104 3.0225 -1.4415 6 6 1.2750 4.4892 -1.4408 7 6 1.1260 4.9698 -2.8614 8 1 1.3219 4.2962 -3.6826 9 6 0.7387 6.2690 -3.1127 10 7 0.6092 6.6884 -4.3524 11 14 0.3992 7.4336 -1.6923 12 1 1.6513 8.1412 -1.3223 13 1 -0.6279 8.4256 -2.1002 14 1 -0.0956 6.6601 -0.5253 15 7 3.5161 0.6479 -0.0049 16 7 3.5211 -0.6373 -0.0033 17 6 2.2887 -1.0878 0.0034 18 7 1.8977 -2.4173 0.0066 19 6 1.0150 -2.7035 1.1447 20 6 0.4881 -4.1362 1.0357 21 6 1.6697 -5.1100 1.0247 22 6 2.5987 -4.7598 -0.1411 23 6 3.0643 -3.3091 0.0021 24 1 -0.3634 0.0028 1.0277 25 1 -0.3633 0.8886 -0.5163 26 1 -0.3634 -0.8913 -0.5114 27 1 0.9081 2.6307 0.5189 28 1 2.6145 3.1367 0.5104 29 1 2.6645 2.9267 -1.9598 30 1 0.9580 2.4208 -1.9513 31 1 0.3208 4.5848 -0.9227 32 1 2.0272 5.0913 -0.9310 33 1 0.3363 7.6023 -4.5292 34 1 1.5731 -2.5915 2.0743 35 1 0.1767 -2.0068 1.1384 36 1 -0.0818 -4.2451 0.1129 37 1 -0.1546 -4.3535 1.8888 38 1 1.3012 -6.1286 0.9035 39 1 2.2175 -5.0300 1.9637 40 1 2.0619 -4.8785 -1.0823 41 1 3.4638 -5.4226 -0.1295 42 1 3.7145 -3.0521 -0.8342 43 1 3.6127 -3.1944 0.9371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121397361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:35 Heat of formation + Delta-G solvation = 66.239747 kcal Electronic energy + Delta-G solvation = -21710.592897 eV Core-core repulsion = 18598.546861 eV Total energy + Delta-G solvation = -3112.046036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.90007 -39.31204 -35.39728 -34.84978 -33.76583 -32.27783 -31.28026 -29.84301 -27.77781 -27.21151 -24.78470 -23.97220 -23.21446 -21.35936 -20.63466 -20.14590 -19.95461 -17.55565 -16.72907 -16.32586 -16.25448 -15.30330 -15.20844 -14.46668 -14.43070 -14.21095 -13.93933 -13.82752 -13.57706 -13.41772 -12.91893 -12.68759 -12.52103 -12.18014 -11.83142 -11.66135 -11.41397 -11.25771 -11.10457 -10.93398 -10.89096 -10.83133 -10.44594 -10.10403 -10.01949 -9.87137 -9.77357 -9.58246 -9.21075 -8.54542 -8.16272 -6.04547 -4.03037 1.84712 2.24285 2.97855 3.30531 3.37721 3.39646 3.48417 4.27685 4.39929 4.44262 4.47518 4.54799 4.64764 4.76303 4.90884 4.93497 4.97566 5.06372 5.18551 5.21557 5.28696 5.29953 5.35644 5.47210 5.49980 5.61314 5.69031 5.70749 5.71916 5.88925 5.93100 5.96639 6.06830 6.44664 6.51778 6.54002 6.63392 6.83254 7.16460 7.26095 7.38225 7.77619 8.53371 8.92929 9.00627 9.57288 11.09021 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.038546 B = 0.003145 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.222590 B = 8901.406750 C = 9027.263351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.483 5.483 3 C 0.198 3.802 4 C -0.037 4.037 5 C -0.095 4.095 6 C -0.012 4.012 7 C -0.521 4.521 8 H 0.071 0.929 9 C 0.066 3.934 10 N -0.904 5.904 11 Si 0.881 3.119 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.265 1.265 15 N -0.287 5.287 16 N -0.324 5.324 17 C 0.345 3.655 18 N -0.448 5.448 19 C 0.049 3.951 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.119 4.119 23 C 0.072 3.928 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.016 0.984 32 H 0.015 0.985 33 H 0.263 0.737 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 -23.108 13.968 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.179 5.179 3 C -0.069 4.069 4 C -0.076 4.076 5 C -0.134 4.134 6 C -0.050 4.050 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.135 4.135 10 N -0.543 5.543 11 Si 0.708 3.292 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.190 1.190 15 N -0.125 5.125 16 N -0.168 5.168 17 C -0.012 4.012 18 N -0.172 5.172 19 C -0.078 4.078 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.054 4.054 24 H 0.095 0.905 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.403 -23.078 13.434 26.740 hybrid contribution -1.343 0.820 1.141 1.944 sum -2.746 -22.258 14.575 26.746 Atomic orbital electron populations 1.22150 0.75637 1.05820 1.03441 1.46044 1.08558 1.05791 1.57486 1.25151 0.86410 0.91921 1.03458 1.20344 1.01939 0.84054 1.01309 1.21477 1.01715 0.98623 0.91612 1.19576 0.95925 0.91323 0.98136 1.21123 1.46062 0.97359 0.91353 0.91078 1.25042 0.94899 0.98120 0.95485 1.69920 1.48100 1.17417 1.18822 0.86763 0.78364 0.80875 0.83165 1.20203 1.21462 1.19012 1.73992 1.17461 1.02266 1.18798 1.74546 1.15320 1.03821 1.23139 1.22542 0.87159 0.87022 1.04447 1.58607 1.19593 0.97137 1.41891 1.22382 0.96242 0.98601 0.90595 1.21601 0.98021 0.92715 1.02971 1.21625 0.96587 0.99190 0.98794 1.21663 0.99878 0.94725 0.99412 1.22043 0.89559 0.90782 1.03050 0.90548 0.88224 0.88958 0.90480 0.88487 0.91804 0.92963 0.96582 0.96629 0.92728 0.93563 0.90157 0.90621 0.90805 0.91323 0.91965 0.90773 0.90590 0.89061 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 9.16 59.84 0.55 1.25 16 2 N -0.48 -6.81 3.21 -121.46 -0.39 -7.20 16 3 C 0.20 3.30 7.32 -154.02 -1.13 2.17 16 4 C -0.04 -0.58 5.43 -27.89 -0.15 -0.73 16 5 C -0.10 -1.87 5.13 -26.73 -0.14 -2.01 16 6 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 7 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 10 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 11 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 15 N -0.29 -5.49 12.18 32.99 0.40 -5.08 16 16 N -0.32 -5.79 11.24 30.32 0.34 -5.45 16 17 C 0.34 5.11 7.21 -318.87 -2.30 2.81 16 18 N -0.45 -5.11 4.70 -174.55 -0.82 -5.93 16 19 C 0.05 0.42 5.28 -3.83 -0.02 0.40 16 20 C -0.12 -0.72 6.09 -26.65 -0.16 -0.88 16 21 C -0.12 -0.75 6.00 -26.61 -0.16 -0.91 16 22 C -0.12 -0.85 6.09 -26.65 -0.16 -1.02 16 23 C 0.07 0.75 4.88 -3.84 -0.02 0.73 16 24 H 0.08 0.55 7.75 -51.93 -0.40 0.15 16 25 H 0.10 0.97 7.91 -51.93 -0.41 0.56 16 26 H 0.09 0.76 7.66 -51.93 -0.40 0.37 16 27 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 28 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 32 H 0.02 0.35 7.57 -51.92 -0.39 -0.04 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.62 5.24 -51.93 -0.27 0.35 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 1.07 7.92 -51.93 -0.41 0.66 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -34.17 340.33 -10.78 -44.95 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -7.31 Total: -4.09 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -4.23 Total: -11.92 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.31 Total: -50.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.17 -10.78 -44.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121397361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.185 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds