Wall clock time and date at job start Tue Mar 31 2020 00:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36738 * 127.13766 * 2 1 4 4 C 1.50696 * 126.35188 * 0.03119 * 3 2 1 5 5 C 1.52997 * 109.47425 * 270.25867 * 4 3 2 6 6 C 1.52997 * 109.47358 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47437 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99754 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00196 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99855 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 119.99888 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47107 * 89.99941 * 11 9 7 13 13 H 1.48501 * 109.47234 * 209.99740 * 11 9 7 14 14 H 1.48501 * 109.47418 * 330.00287 * 11 9 7 15 15 N 1.30298 * 107.30222 * 180.22648 * 3 2 1 16 16 N 1.28525 * 110.05622 * 359.77492 * 15 3 2 17 17 C 1.31215 * 109.85895 * 359.97438 * 16 15 3 18 18 N 1.38587 * 126.47163 * 179.97438 * 17 16 15 19 19 C 1.46846 * 110.99818 * 124.23622 * 18 17 16 20 20 C 1.53040 * 109.51964 * 174.15932 * 19 18 17 21 21 C 1.53119 * 109.28089 * 59.17912 * 20 19 18 22 22 C 1.53124 * 109.15841 * 302.34776 * 21 20 19 23 23 C 1.46846 * 110.99996 * 0.02562 * 18 17 16 24 24 H 1.09001 * 109.47331 * 270.15671 * 1 2 3 25 25 H 1.09005 * 109.47104 * 30.15480 * 1 2 3 26 26 H 1.08997 * 109.47476 * 150.15348 * 1 2 3 27 27 H 1.09004 * 109.46555 * 30.25503 * 4 3 2 28 28 H 1.08995 * 109.47513 * 150.24961 * 4 3 2 29 29 H 1.09004 * 109.46957 * 299.99390 * 5 4 3 30 30 H 1.08997 * 109.47618 * 59.99629 * 5 4 3 31 31 H 1.08996 * 109.47486 * 299.99987 * 6 5 4 32 32 H 1.09007 * 109.47024 * 59.99903 * 6 5 4 33 33 H 0.97000 * 119.99972 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.46231 * 294.17678 * 19 18 17 35 35 H 1.09004 * 109.46418 * 54.14518 * 19 18 17 36 36 H 1.09004 * 109.50602 * 299.23671 * 20 19 18 37 37 H 1.08998 * 109.50366 * 179.12192 * 20 19 18 38 38 H 1.08998 * 109.52394 * 182.44064 * 21 20 19 39 39 H 1.09003 * 109.56984 * 62.28008 * 21 20 19 40 40 H 1.08999 * 109.49853 * 297.70868 * 22 21 20 41 41 H 1.08994 * 109.53481 * 177.61659 * 22 21 20 42 42 H 1.09001 * 109.45990 * 305.85678 * 23 18 17 43 43 H 1.08999 * 109.46398 * 65.83601 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8622 2.5349 0.0007 5 6 1.7104 3.0225 -1.4415 6 6 1.2750 4.4892 -1.4408 7 6 1.1260 4.9698 -2.8614 8 1 1.3219 4.2962 -3.6826 9 6 0.7387 6.2690 -3.1127 10 7 0.6092 6.6884 -4.3524 11 14 0.3992 7.4336 -1.6923 12 1 1.6513 8.1412 -1.3223 13 1 -0.6279 8.4256 -2.1002 14 1 -0.0956 6.6601 -0.5253 15 7 3.5161 0.6479 -0.0049 16 7 3.5211 -0.6373 -0.0033 17 6 2.2887 -1.0878 0.0034 18 7 1.8977 -2.4173 0.0066 19 6 1.0150 -2.7035 1.1447 20 6 0.4881 -4.1362 1.0357 21 6 1.6697 -5.1100 1.0247 22 6 2.5987 -4.7598 -0.1411 23 6 3.0643 -3.3091 0.0021 24 1 -0.3634 0.0028 1.0277 25 1 -0.3633 0.8886 -0.5163 26 1 -0.3634 -0.8913 -0.5114 27 1 0.9081 2.6307 0.5189 28 1 2.6145 3.1367 0.5104 29 1 2.6645 2.9267 -1.9598 30 1 0.9580 2.4208 -1.9513 31 1 0.3208 4.5848 -0.9227 32 1 2.0272 5.0913 -0.9310 33 1 0.3363 7.6023 -4.5292 34 1 1.5731 -2.5915 2.0743 35 1 0.1767 -2.0068 1.1384 36 1 -0.0818 -4.2451 0.1129 37 1 -0.1546 -4.3535 1.8888 38 1 1.3012 -6.1286 0.9035 39 1 2.2175 -5.0300 1.9637 40 1 2.0619 -4.8785 -1.0823 41 1 3.4638 -5.4226 -0.1295 42 1 3.7145 -3.0521 -0.8342 43 1 3.6127 -3.1944 0.9371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121397361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:34 Heat of formation + Delta-G solvation = 46.518463 kcal Electronic energy + Delta-G solvation = -21711.448076 eV Core-core repulsion = 18598.546861 eV Total energy + Delta-G solvation = -3112.901215 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.06714 -40.08780 -36.85001 -35.98916 -34.90650 -34.06430 -31.94662 -31.36391 -28.93457 -28.48022 -25.62172 -25.43374 -24.15620 -22.33668 -22.19185 -21.49934 -20.69720 -18.92568 -18.42024 -17.43855 -17.30439 -16.44554 -16.05751 -15.97626 -15.64368 -15.16707 -15.01479 -14.74440 -14.52319 -14.36590 -14.29874 -13.88910 -13.70892 -13.42250 -13.18947 -12.82977 -12.65561 -12.53733 -12.25037 -11.98671 -11.77908 -11.69796 -11.64862 -11.50776 -11.44698 -11.34540 -11.34085 -11.11482 -10.76451 -10.74340 -9.29577 -8.27103 -6.32348 0.72104 1.21526 1.40675 1.42570 1.54369 1.74673 2.39609 2.57360 3.08788 3.36115 3.61643 3.72130 3.78827 3.90314 3.99410 4.10314 4.23164 4.26772 4.30221 4.30338 4.35458 4.47218 4.52947 4.59533 4.60741 4.77003 4.79751 4.91282 4.93539 4.95690 5.04081 5.04920 5.10502 5.18508 5.23987 5.40467 5.47105 5.53612 5.59197 5.68117 5.70857 6.13726 6.30018 6.76156 7.32263 7.70779 8.90261 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.038546 B = 0.003145 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.222590 B = 8901.406750 C = 9027.263351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.481 5.481 3 C 0.190 3.810 4 C -0.023 4.023 5 C -0.084 4.084 6 C -0.008 4.008 7 C -0.536 4.536 8 H 0.022 0.978 9 C -0.001 4.001 10 N -0.957 5.957 11 Si 0.957 3.043 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.233 1.233 15 N -0.328 5.328 16 N -0.365 5.365 17 C 0.353 3.647 18 N -0.447 5.447 19 C 0.046 3.954 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.112 4.112 23 C 0.072 3.928 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.034 0.966 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.024 0.976 33 H 0.266 0.734 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 -24.164 16.946 29.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.176 5.176 3 C -0.079 4.079 4 C -0.063 4.063 5 C -0.123 4.123 6 C -0.045 4.045 7 C -0.574 4.574 8 H 0.041 0.959 9 C -0.197 4.197 10 N -0.597 5.597 11 Si 0.779 3.221 12 H -0.195 1.195 13 H -0.213 1.213 14 H -0.155 1.155 15 N -0.167 5.167 16 N -0.210 5.210 17 C -0.004 4.004 18 N -0.172 5.172 19 C -0.080 4.080 20 C -0.147 4.147 21 C -0.160 4.160 22 C -0.150 4.150 23 C -0.055 4.055 24 H 0.126 0.874 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.505 -24.174 16.427 29.437 hybrid contribution -0.693 1.023 0.089 1.239 sum -4.198 -23.151 16.516 28.747 Atomic orbital electron populations 1.22528 0.72915 1.06624 1.05752 1.46230 1.10026 1.04712 1.56624 1.25160 0.86384 0.92683 1.03702 1.20194 1.03918 0.83590 0.98561 1.21235 0.99930 0.96862 0.94244 1.19517 0.97173 0.93181 0.94667 1.21512 1.45731 0.97050 0.93086 0.95918 1.26128 0.94548 1.00281 0.98737 1.70096 1.49677 1.18173 1.21790 0.85568 0.78455 0.78192 0.79875 1.19516 1.21253 1.15546 1.73878 1.19363 1.03170 1.20255 1.74435 1.17444 1.03602 1.25480 1.22947 0.86674 0.88457 1.02353 1.58822 1.19929 0.95384 1.43047 1.22570 0.95784 1.00668 0.89027 1.21624 0.98209 0.90854 1.04061 1.21643 0.96217 1.00161 0.98023 1.21652 1.00780 0.92444 1.00103 1.22078 0.89263 0.92571 1.01600 0.87420 0.88120 0.87559 0.87018 0.88042 0.94690 0.93252 0.94459 0.95774 0.92543 0.94178 0.88951 0.90425 0.88579 0.89471 0.91906 0.90870 0.89301 0.91417 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 9.16 127.77 1.17 2.19 16 2 N -0.48 -12.88 3.21 -538.19 -1.73 -14.61 16 3 C 0.19 6.21 7.32 137.64 1.01 7.21 16 4 C -0.02 -0.69 5.43 29.85 0.16 -0.53 16 5 C -0.08 -3.25 5.13 30.59 0.16 -3.10 16 6 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 7 C -0.54 -31.10 9.66 25.60 0.25 -30.86 16 8 H 0.02 1.48 7.99 -2.91 -0.02 1.45 16 9 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 10 N -0.96 -60.81 13.96 21.45 0.30 -60.51 16 11 Si 0.96 43.29 27.47 68.60 1.88 45.17 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.23 -9.25 6.54 99.48 0.65 -8.60 16 15 N -0.33 -12.82 12.18 -49.54 -0.60 -13.43 16 16 N -0.36 -13.43 11.24 -58.00 -0.65 -14.08 16 17 C 0.35 10.35 7.21 260.11 1.88 12.22 16 18 N -0.45 -9.74 4.70 -706.16 -3.32 -13.06 16 19 C 0.05 0.67 5.28 86.33 0.46 1.13 16 20 C -0.11 -1.01 6.09 30.65 0.19 -0.82 16 21 C -0.12 -1.14 6.00 30.68 0.18 -0.95 16 22 C -0.11 -1.44 6.09 30.65 0.19 -1.25 16 23 C 0.07 1.47 4.88 86.32 0.42 1.89 16 24 H 0.11 1.11 7.75 -2.39 -0.02 1.09 16 25 H 0.10 1.67 7.91 -2.38 -0.02 1.65 16 26 H 0.11 1.44 7.66 -2.39 -0.02 1.42 16 27 H 0.11 2.56 7.95 -2.39 -0.02 2.54 16 28 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 32 H 0.02 1.04 7.57 -2.38 -0.02 1.03 16 33 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 34 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 1.12 5.24 -2.38 -0.01 1.11 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.68 7.92 -2.39 -0.02 1.66 16 43 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -78.07 340.33 3.44 -74.63 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.92 Total: 8.57 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 6.64 Total: -12.69 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -6.00 Total: -115.68 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -78.07 3.44 -74.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121397361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.149 kcal (2) G-P(sol) polarization free energy of solvation -78.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds