Wall clock time and date at job start Tue Mar 31 2020 00:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00062 * 2 1 4 4 C 1.53000 * 109.47315 * 293.95501 * 3 2 1 5 5 C 1.52993 * 109.47436 * 180.02562 * 4 3 2 6 6 C 1.53006 * 117.49845 * 243.62099 * 5 4 3 7 7 C 1.53005 * 60.00128 * 252.50816 * 6 5 4 8 8 C 1.38583 * 110.99899 * 123.95154 * 2 1 3 9 9 N 1.31207 * 126.47386 * 291.83040 * 8 2 1 10 10 N 1.28535 * 109.86176 * 179.97438 * 9 8 2 11 11 C 1.30300 * 110.05025 * 0.02562 * 10 9 8 12 12 C 1.50694 * 126.34221 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47140 * 89.97749 * 12 11 10 14 14 C 1.50693 * 109.47137 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00504 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99868 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00038 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99893 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47078 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46977 * 119.99990 * 18 16 14 21 21 H 1.48492 * 109.47118 * 240.00120 * 18 16 14 22 22 N 1.36451 * 126.47114 * 111.51405 * 8 2 1 23 23 C 1.46507 * 127.13462 * 0.04007 * 22 8 2 24 24 H 1.08999 * 109.47123 * 66.65873 * 1 2 3 25 25 H 1.08998 * 109.47284 * 186.65675 * 1 2 3 26 26 H 1.08998 * 109.47302 * 306.66245 * 1 2 3 27 27 H 1.08999 * 109.47114 * 173.95465 * 3 2 1 28 28 H 1.09002 * 109.47311 * 53.95370 * 3 2 1 29 29 H 1.09002 * 109.46824 * 300.00167 * 4 3 2 30 30 H 1.08999 * 109.47592 * 59.99380 * 4 3 2 31 31 H 1.08996 * 115.55346 * 29.32256 * 5 4 3 32 32 H 1.08999 * 117.49466 * 359.97438 * 6 5 4 33 33 H 1.08998 * 117.50141 * 145.02091 * 6 5 4 34 34 H 1.09002 * 117.49767 * 252.51322 * 7 6 5 35 35 H 1.08994 * 117.49991 * 107.48753 * 7 6 5 36 36 H 1.09001 * 109.46850 * 209.97015 * 12 11 10 37 37 H 1.08994 * 109.47889 * 329.97409 * 12 11 10 38 38 H 1.09001 * 109.46650 * 299.99388 * 13 12 11 39 39 H 1.09003 * 109.47198 * 59.99187 * 13 12 11 40 40 H 0.96998 * 120.00354 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.46954 * 95.17590 * 23 22 8 42 42 H 1.09002 * 109.47007 * 215.17331 * 23 22 8 43 43 H 1.08992 * 109.47075 * 335.16972 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 6 2.1803 3.4855 -1.3185 6 6 1.1680 4.6314 -1.3759 7 6 2.0220 4.3030 -2.6022 8 6 1.9656 -0.7226 1.0732 9 7 1.8788 -0.3953 2.3409 10 7 2.4473 -1.2934 3.0636 11 6 2.9270 -2.2388 2.3060 12 6 3.6637 -3.4684 2.7710 13 6 2.6624 -4.5969 3.0262 14 6 3.3992 -5.8267 3.4905 15 1 4.4741 -5.8056 3.5938 16 6 2.7009 -6.9787 3.7846 17 7 1.3921 -7.0044 3.6593 18 14 3.6142 -8.5030 4.3609 19 1 5.0699 -8.2155 4.4188 20 1 3.1320 -8.8877 5.7117 21 1 3.3665 -9.6171 3.4110 22 7 2.6320 -1.9117 1.0116 23 6 2.9657 -2.6772 -0.1922 24 1 -0.3633 0.4072 -0.9435 25 1 -0.3634 -1.0207 0.1191 26 1 -0.3634 0.6136 0.8243 27 1 3.0797 1.3443 0.1082 28 1 1.5611 1.9273 0.8309 29 1 2.0658 1.5015 -2.1491 30 1 0.5472 2.0845 -1.4266 31 1 3.0848 3.6417 -0.7308 32 1 0.1111 4.3677 -1.4138 33 1 1.4064 5.5416 -0.8257 34 1 2.8223 4.9972 -2.8587 35 1 1.5269 3.8234 -3.4464 36 1 4.3731 -3.7788 2.0038 37 1 4.2005 -3.2438 3.6926 38 1 1.9531 -4.2865 3.7934 39 1 2.1256 -4.8216 2.1045 40 1 0.9009 -7.8149 3.8658 41 1 3.9783 -2.4298 -0.5110 42 1 2.9039 -3.7433 0.0264 43 1 2.2632 -2.4282 -0.9875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121494273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:43 Heat of formation + Delta-G solvation = 96.260876 kcal Electronic energy + Delta-G solvation = -21326.713137 eV Core-core repulsion = 18215.968915 eV Total energy + Delta-G solvation = -3110.744222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.56715 -38.51753 -36.98298 -34.79159 -33.83890 -31.86741 -30.68460 -28.60758 -27.34331 -26.31134 -25.16395 -23.27481 -22.64552 -21.86657 -20.66488 -20.36752 -19.91620 -17.04739 -16.50182 -16.19768 -16.00224 -15.83233 -14.99728 -14.61831 -14.49473 -14.06748 -13.77762 -13.37328 -13.06719 -13.05913 -12.50508 -12.38188 -12.27405 -11.94654 -11.85771 -11.68830 -11.37768 -11.25521 -11.12260 -11.01695 -10.68069 -10.54889 -10.40604 -10.16090 -9.98407 -9.87385 -9.70533 -9.22761 -8.81948 -8.43115 -8.40594 -6.06942 -4.11102 2.09423 2.53621 3.25962 3.27919 3.35955 3.39542 3.48046 3.76220 4.40102 4.42561 4.58557 4.63435 4.81153 4.92240 5.05289 5.06363 5.14742 5.28200 5.29237 5.32524 5.33780 5.35395 5.41171 5.56705 5.57363 5.62864 5.66929 5.76049 5.78853 5.83106 5.90140 6.06900 6.32856 6.34033 6.45637 6.61518 6.67700 6.95170 7.46902 7.53924 7.67481 7.90590 8.27991 8.95326 9.16194 9.53695 11.04250 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.046364 B = 0.002880 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.772178 B = 9719.180095 C = 9723.499111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.465 5.465 3 C 0.073 3.927 4 C -0.084 4.084 5 C -0.151 4.151 6 C -0.181 4.181 7 C -0.180 4.180 8 C 0.317 3.683 9 N -0.313 5.313 10 N -0.299 5.299 11 C 0.216 3.784 12 C -0.032 4.032 13 C 0.031 3.969 14 C -0.523 4.523 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 N -0.467 5.467 23 C 0.081 3.919 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.014 0.986 40 H 0.261 0.739 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 17.781 -14.387 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.190 5.190 3 C -0.055 4.055 4 C -0.122 4.122 5 C -0.170 4.170 6 C -0.218 4.218 7 C -0.217 4.217 8 C -0.039 4.039 9 N -0.157 5.157 10 N -0.139 5.139 11 C -0.051 4.051 12 C -0.072 4.072 13 C -0.007 4.007 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 N -0.159 5.159 23 C -0.063 4.063 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.358 18.213 -13.584 22.724 hybrid contribution 0.371 -1.261 -0.284 1.345 sum 0.729 16.952 -13.869 21.914 Atomic orbital electron populations 1.22463 0.84260 1.02856 1.01889 1.58594 1.09322 1.14452 1.36600 1.22121 1.00297 0.85371 0.97683 1.21180 1.00871 0.92729 0.97431 1.22251 1.01043 0.92226 1.01480 1.23050 0.97100 0.99741 1.01899 1.22959 1.03139 1.03539 0.92099 1.22141 1.01782 0.88770 0.91210 1.74480 1.19404 1.22506 0.99345 1.74049 1.13433 1.00708 1.25662 1.25651 1.00786 0.99605 0.79071 1.20458 0.97882 0.87839 1.01006 1.19078 0.93620 0.90576 0.97415 1.21179 0.93687 0.95914 1.45390 0.92197 1.25021 0.94829 0.99011 0.95456 1.69977 1.06220 1.28219 1.48685 0.86494 0.80012 0.82811 0.78447 1.19605 1.20916 1.21024 1.46206 1.42810 1.18014 1.08911 1.22014 1.02071 0.97194 0.84989 0.90175 0.91224 0.93668 0.90737 0.92690 0.90642 0.91381 0.87714 0.88759 0.88923 0.88906 0.88778 0.91107 0.89222 0.95623 0.96771 0.92901 0.90628 0.88646 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.17 60.06 0.55 0.93 16 2 N -0.46 -6.08 4.75 -182.39 -0.87 -6.94 16 3 C 0.07 0.81 4.77 -3.83 -0.02 0.80 16 4 C -0.08 -0.71 5.42 -26.73 -0.14 -0.85 16 5 C -0.15 -1.18 5.74 -90.62 -0.52 -1.70 16 6 C -0.18 -1.28 10.18 -26.73 -0.27 -1.55 16 7 C -0.18 -1.22 10.25 -26.72 -0.27 -1.49 16 8 C 0.32 5.42 6.39 -318.89 -2.04 3.39 16 9 N -0.31 -6.34 12.12 30.31 0.37 -5.97 16 10 N -0.30 -6.59 12.18 32.99 0.40 -6.19 16 11 C 0.22 4.36 7.32 -154.02 -1.13 3.23 16 12 C -0.03 -0.65 5.46 -27.88 -0.15 -0.81 16 13 C 0.03 0.79 4.95 -27.88 -0.14 0.66 16 14 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 N -0.47 -8.03 3.21 -121.46 -0.39 -8.42 16 23 C 0.08 1.04 10.89 59.85 0.65 1.69 16 24 H 0.08 0.69 6.80 -51.93 -0.35 0.34 16 25 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 26 H 0.04 0.55 8.05 -51.93 -0.42 0.13 16 27 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 28 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.53 6.44 -51.93 -0.33 0.20 16 31 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.28 7.98 -51.93 -0.41 0.87 16 37 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 43 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -32.52 358.40 -10.64 -43.16 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -7.37 Total: -2.67 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -3.89 Total: -8.74 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.25 Total: -53.27 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.52 -10.64 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.421 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds