Wall clock time and date at job start Tue Mar 31 2020 00:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46907 * 109.47346 * 2 1 4 4 C 1.46892 * 110.99810 * 69.05335 * 3 2 1 5 5 C 1.52999 * 109.47340 * 70.98992 * 4 3 2 6 6 C 1.52999 * 117.49842 * 244.38186 * 5 4 3 7 7 C 1.53002 * 117.50157 * 175.72282 * 5 4 3 8 8 C 1.38580 * 110.99980 * 305.09838 * 3 2 1 9 9 N 1.31214 * 126.47500 * 107.27223 * 8 3 2 10 10 N 1.28524 * 109.86597 * 179.69874 * 9 8 3 11 11 C 1.30295 * 110.04914 * 0.44902 * 10 9 8 12 12 C 1.50703 * 126.34774 * 179.82968 * 11 10 9 13 13 C 1.53006 * 109.46787 * 269.68875 * 12 11 10 14 14 C 1.50692 * 109.47083 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00117 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00127 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99610 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47643 * 89.99848 * 18 16 14 20 20 H 1.48508 * 109.47194 * 210.00040 * 18 16 14 21 21 H 1.48508 * 109.47413 * 329.99681 * 18 16 14 22 22 N 1.36451 * 126.47495 * 287.23196 * 8 3 2 23 23 C 1.46500 * 127.13462 * 0.05796 * 22 8 3 24 24 H 1.09003 * 109.47350 * 61.09400 * 1 2 3 25 25 H 1.08990 * 109.47538 * 181.10166 * 1 2 3 26 26 H 1.09007 * 109.46999 * 301.09987 * 1 2 3 27 27 H 1.09004 * 109.47016 * 240.00245 * 2 1 3 28 28 H 1.08998 * 109.47690 * 120.00292 * 2 1 3 29 29 H 1.09006 * 109.46814 * 190.98922 * 4 3 2 30 30 H 1.09000 * 109.47077 * 310.98800 * 4 3 2 31 31 H 1.08997 * 115.54705 * 30.05173 * 5 4 3 32 32 H 1.08998 * 117.50104 * 0.02562 * 6 5 4 33 33 H 1.09000 * 117.49942 * 145.01898 * 6 5 4 34 34 H 1.08994 * 117.49836 * 214.98101 * 7 5 4 35 35 H 1.09003 * 117.49553 * 359.97438 * 7 5 4 36 36 H 1.08992 * 109.47291 * 149.68970 * 12 11 10 37 37 H 1.08999 * 109.46982 * 29.68524 * 12 11 10 38 38 H 1.08996 * 109.46789 * 59.99607 * 13 12 11 39 39 H 1.09000 * 109.46765 * 300.00036 * 13 12 11 40 40 H 0.96996 * 119.99141 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47141 * 264.55372 * 23 22 8 42 42 H 1.08996 * 109.47717 * 24.55313 * 23 22 8 43 43 H 1.08999 * 109.47233 * 144.55642 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7330 2.0447 1.2807 5 6 2.6312 1.4557 2.3703 6 6 1.9519 0.6983 3.5129 7 6 2.5552 2.0825 3.7639 8 6 1.4839 2.1012 -1.0585 9 7 0.5636 3.0334 -0.9831 10 7 0.3074 3.4901 -2.1569 11 6 1.0362 2.8748 -3.0445 12 6 1.0279 3.1189 -4.5316 13 6 -0.0016 2.2006 -5.1934 14 6 -0.0095 2.4442 -6.6804 15 1 0.6532 3.1806 -7.1106 16 6 -0.8635 1.7277 -7.4919 17 7 -1.6708 0.8313 -6.9680 18 14 -0.8728 2.0291 -9.3353 19 1 0.1074 1.1257 -9.9897 20 1 -2.2303 1.7602 -9.8741 21 1 -0.5029 3.4413 -9.6080 22 7 1.8144 1.9708 -2.3760 23 6 2.7984 1.0524 -2.9543 24 1 -0.3634 0.4968 -0.8996 25 1 -0.3634 -1.0274 0.0198 26 1 -0.3633 0.5309 0.8800 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.9254 3.1138 1.1898 30 1 0.6878 1.8849 1.5458 31 1 3.6026 1.0934 2.0336 32 1 0.8650 0.6192 3.4883 33 1 2.4764 -0.1622 3.9283 34 1 3.4765 2.1321 4.3443 35 1 1.8656 2.9148 3.9045 36 1 2.0167 2.9098 -4.9397 37 1 0.7664 4.1588 -4.7277 38 1 -0.9904 2.4098 -4.7852 39 1 0.2599 1.1608 -4.9972 40 1 -2.2712 0.3270 -7.5390 41 1 3.7508 1.5687 -3.0742 42 1 2.9299 0.1967 -2.2921 43 1 2.4466 0.7084 -3.9269 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121494352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:28 Heat of formation + Delta-G solvation = 102.398334 kcal Electronic energy + Delta-G solvation = -21991.484005 eV Core-core repulsion = 18881.005923 eV Total energy + Delta-G solvation = -3110.478082 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.59651 -38.87124 -36.48344 -34.80346 -33.78964 -31.79067 -30.66445 -28.57400 -27.38956 -26.40788 -25.30196 -23.15731 -22.59127 -21.85617 -21.00089 -19.99334 -19.71064 -16.97648 -16.72699 -16.36038 -15.97827 -15.62065 -14.90679 -14.56835 -14.34148 -13.96082 -13.72024 -13.22747 -13.03819 -12.98329 -12.67193 -12.50563 -12.27643 -11.97374 -11.75914 -11.56002 -11.33075 -11.15043 -11.02755 -10.99476 -10.68892 -10.58381 -10.36575 -10.13549 -9.96754 -9.87646 -9.71147 -9.25321 -9.15141 -8.42330 -7.98092 -6.06735 -4.10779 2.15462 2.55422 3.28337 3.29281 3.35604 3.39172 3.53019 3.78924 4.40292 4.54601 4.67689 4.69200 4.78953 4.85415 5.02909 5.07866 5.18617 5.25979 5.29358 5.30256 5.34950 5.40070 5.44479 5.58872 5.62955 5.65674 5.70583 5.75022 5.87407 5.91486 6.07402 6.20100 6.28250 6.35812 6.47670 6.67199 6.73330 6.97822 7.47825 7.54243 7.68414 7.90939 8.28645 8.95448 9.23148 9.53917 11.04381 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.038010 B = 0.003462 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.467414 B = 8086.900781 C = 8260.441722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.051 3.949 3 N -0.452 5.452 4 C 0.101 3.899 5 C -0.147 4.147 6 C -0.184 4.184 7 C -0.175 4.175 8 C 0.335 3.665 9 N -0.323 5.323 10 N -0.297 5.297 11 C 0.212 3.788 12 C -0.031 4.031 13 C 0.032 3.968 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.272 1.272 22 N -0.476 5.476 23 C 0.078 3.922 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.013 0.987 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.797 -3.399 17.410 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.076 4.076 3 N -0.176 5.176 4 C -0.026 4.026 5 C -0.166 4.166 6 C -0.221 4.221 7 C -0.212 4.212 8 C -0.022 4.022 9 N -0.167 5.167 10 N -0.135 5.135 11 C -0.056 4.056 12 C -0.071 4.071 13 C -0.006 4.006 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 N -0.170 5.170 23 C -0.065 4.065 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.179 -2.603 17.906 20.760 hybrid contribution 0.146 -0.970 -1.454 1.754 sum 10.324 -3.573 16.452 19.749 Atomic orbital electron populations 1.22368 0.96523 1.02575 1.03015 1.22345 0.94346 0.87436 1.03466 1.58862 1.55641 1.02304 1.00789 1.21593 0.97742 0.98569 0.84741 1.22278 1.01126 1.04141 0.89071 1.23099 1.00396 0.95434 1.03131 1.22954 1.03109 0.96715 0.98437 1.22251 0.96373 0.99872 0.83685 1.74516 1.12339 1.12800 1.17052 1.73994 1.21452 1.23481 0.94621 1.25556 0.91630 0.89765 0.98606 1.20430 1.02202 1.03422 0.81038 1.19061 0.93351 0.93277 0.94888 1.21151 1.21659 1.21723 0.91700 0.92273 1.25015 0.95267 0.95081 0.98912 1.69974 1.23413 1.24248 1.35484 0.86554 0.77324 0.78679 0.85219 1.20670 1.21178 1.19709 1.46064 1.33009 1.31709 1.06246 1.22061 0.91055 0.92681 1.00694 0.92188 0.91592 0.91963 0.90505 0.88967 0.89422 0.92313 0.86964 0.88789 0.88856 0.88681 0.88622 0.91226 0.89305 0.95666 0.96862 0.92877 0.90430 0.89564 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 9.37 37.16 0.35 -2.01 16 2 C 0.05 0.57 5.83 -3.82 -0.02 0.55 16 3 N -0.45 -5.87 4.68 -174.51 -0.82 -6.68 16 4 C 0.10 1.18 4.61 -3.83 -0.02 1.16 16 5 C -0.15 -1.31 4.95 -90.62 -0.45 -1.76 16 6 C -0.18 -1.39 10.16 -26.69 -0.27 -1.66 16 7 C -0.17 -1.35 10.25 -26.69 -0.27 -1.62 16 8 C 0.33 5.62 5.26 -318.88 -1.68 3.94 16 9 N -0.32 -6.41 11.33 30.31 0.34 -6.06 16 10 N -0.30 -6.50 12.18 32.99 0.40 -6.10 16 11 C 0.21 4.26 7.32 -154.02 -1.13 3.13 16 12 C -0.03 -0.64 5.47 -27.88 -0.15 -0.79 16 13 C 0.03 0.82 4.95 -27.88 -0.14 0.68 16 14 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 15 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 N -0.48 -8.08 3.21 -121.46 -0.39 -8.47 16 23 C 0.08 0.99 10.86 59.85 0.65 1.64 16 24 H 0.06 1.00 7.13 -51.93 -0.37 0.63 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.77 6.42 -51.92 -0.33 0.44 16 27 H 0.08 0.83 6.27 -51.93 -0.33 0.51 16 28 H 0.09 0.82 7.23 -51.93 -0.38 0.45 16 29 H 0.09 1.17 7.83 -51.93 -0.41 0.76 16 30 H 0.06 0.72 5.93 -51.93 -0.31 0.42 16 31 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.27 7.97 -51.93 -0.41 0.86 16 37 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 38 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.91 6.07 -51.93 -0.32 0.59 16 43 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -32.17 349.42 -10.05 -42.22 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.03 Total: -0.82 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -3.54 Total: -9.79 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.28 Total: -52.99 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.17 -10.05 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.614 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds