Wall clock time and date at job start Tue Mar 31 2020 00:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.87260 * 2 1 4 4 C 1.54900 * 110.98759 * 123.84637 * 2 1 3 5 5 N 1.47842 * 104.79426 * 155.16384 * 4 2 1 6 6 C 1.38585 * 110.99879 * 213.63384 * 5 4 2 7 7 N 1.31212 * 126.47525 * 359.97413 * 6 5 4 8 8 N 1.28524 * 109.86457 * 180.02562 * 7 6 5 9 9 C 1.30306 * 110.05364 * 359.97438 * 8 7 6 10 10 C 1.50694 * 126.34923 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47175 * 90.02141 * 10 9 8 12 12 C 1.50699 * 109.46843 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00516 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 11 17 17 H 1.48497 * 109.47172 * 179.72730 * 16 14 12 18 18 H 1.48506 * 109.47132 * 299.72429 * 16 14 12 19 19 H 1.48501 * 109.47173 * 59.72550 * 16 14 12 20 20 N 1.36453 * 126.47325 * 180.28737 * 6 5 4 21 21 C 1.46509 * 127.13731 * 0.02562 * 20 6 5 22 22 C 1.47444 * 108.56655 * 335.89976 * 5 4 2 23 23 C 1.54318 * 107.23221 * 0.99287 * 22 5 4 24 24 H 1.08995 * 110.85034 * 263.82734 * 23 22 5 25 25 C 1.52998 * 110.70459 * 140.66459 * 23 22 5 26 26 H 1.08998 * 109.47499 * 297.61405 * 1 2 3 27 27 H 1.09006 * 109.47027 * 57.60848 * 1 2 3 28 28 H 1.08994 * 109.47266 * 177.60783 * 1 2 3 29 29 H 1.08998 * 110.38034 * 36.33294 * 4 2 1 30 30 H 1.09003 * 110.46351 * 274.03615 * 4 2 1 31 31 H 1.09006 * 109.46887 * 330.02337 * 10 9 8 32 32 H 1.08997 * 109.46876 * 210.02386 * 10 9 8 33 33 H 1.09001 * 109.46361 * 60.00344 * 11 10 9 34 34 H 1.08997 * 109.46991 * 300.00234 * 11 10 9 35 35 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46914 * 270.19625 * 21 20 6 37 37 H 1.08994 * 109.46956 * 30.19499 * 21 20 6 38 38 H 1.09003 * 109.46874 * 150.20177 * 21 20 6 39 39 H 1.09005 * 109.88857 * 120.39890 * 22 5 4 40 40 H 1.08996 * 109.89088 * 241.58460 * 22 5 4 41 41 H 1.09001 * 109.47577 * 306.40300 * 25 23 22 42 42 H 1.09000 * 109.47276 * 66.39878 * 25 23 22 43 43 H 1.08994 * 109.47378 * 186.39705 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0848 -0.8055 1.2011 5 7 3.4312 -1.2417 0.7736 6 6 3.7424 -2.4838 1.3035 7 7 2.9795 -3.2123 2.0839 8 7 3.5829 -4.3057 2.3874 9 6 4.7568 -4.3398 1.8229 10 6 5.7688 -5.4510 1.9326 11 6 5.5360 -6.4653 0.8110 12 6 6.5476 -7.5768 0.9211 13 1 7.2833 -7.5612 1.7117 14 6 6.5347 -8.6133 0.0118 15 7 5.6399 -8.6315 -0.9518 16 14 7.7838 -9.9951 0.1529 17 1 7.5550 -10.9819 -0.9329 18 1 9.1548 -9.4371 0.0337 19 1 7.6346 -10.6647 1.4699 20 7 4.9025 -3.1777 1.1172 21 6 6.0625 -2.7644 0.3235 22 6 3.4691 -1.2714 -0.7000 23 6 2.0857 -0.8076 -1.2024 24 1 1.4459 -1.6624 -1.4213 25 6 2.2299 0.0875 -2.4349 26 1 -0.3634 0.4763 0.9106 27 1 -0.3633 0.5506 -0.8678 28 1 -0.3633 -1.0267 -0.0429 29 1 1.4523 -1.6699 1.4032 30 1 2.1542 -0.1719 2.0854 31 1 5.6618 -5.9459 2.8979 32 1 6.7734 -5.0373 1.8457 33 1 5.6431 -5.9704 -0.1543 34 1 4.5313 -6.8789 0.8979 35 1 5.6311 -9.3605 -1.5917 36 1 5.9438 -3.1133 -0.7023 37 1 6.1392 -1.6772 0.3310 38 1 6.9677 -3.1955 0.7514 39 1 4.2421 -0.5948 -1.0648 40 1 3.6681 -2.2858 -1.0455 41 1 2.9161 0.9046 -2.2123 42 1 2.6211 -0.4991 -3.2661 43 1 1.2554 0.4945 -2.7044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121495130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:32 Heat of formation + Delta-G solvation = 69.004163 kcal Electronic energy + Delta-G solvation = -22035.846450 eV Core-core repulsion = 18923.920288 eV Total energy + Delta-G solvation = -3111.926162 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.59463 -39.54006 -34.85231 -34.57764 -33.49392 -31.58316 -31.48990 -28.63011 -27.37493 -26.63819 -25.70481 -24.95633 -21.96095 -21.81435 -20.47743 -20.36553 -19.63777 -17.07843 -16.54091 -16.34305 -15.86214 -15.39039 -14.50596 -14.35485 -14.27024 -13.91985 -13.47892 -13.38035 -13.10257 -13.02840 -12.68445 -12.55878 -12.38306 -12.20513 -12.01063 -11.79884 -11.31176 -11.13401 -11.05271 -10.97486 -10.82805 -10.69117 -10.58939 -10.28605 -10.01623 -9.87695 -9.76058 -9.29518 -9.18936 -8.41581 -7.89086 -6.06158 -4.10343 2.14904 2.58851 3.28603 3.30332 3.35324 3.37873 3.81983 4.19710 4.32097 4.40594 4.52749 4.81525 4.98711 5.05468 5.13791 5.18501 5.21808 5.24433 5.26414 5.29830 5.37900 5.41457 5.53351 5.54686 5.62147 5.64794 5.75874 5.78399 5.86086 5.90665 5.97826 6.16110 6.26171 6.37155 6.47209 6.62827 6.69703 6.95936 7.45714 7.54694 7.68817 7.91252 8.28982 8.95570 9.24166 9.54211 11.04926 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.027301 B = 0.003688 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.342859 B = 7590.306703 C = 7918.853563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.444 5.444 6 C 0.330 3.670 7 N -0.325 5.325 8 N -0.295 5.295 9 C 0.211 3.789 10 C -0.030 4.030 11 C 0.033 3.967 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.287 1.287 18 H -0.277 1.277 19 H -0.275 1.275 20 N -0.482 5.482 21 C 0.079 3.921 22 C 0.045 3.955 23 C -0.109 4.109 24 H 0.081 0.919 25 C -0.139 4.139 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.013 0.987 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 19.977 -2.203 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.104 0.896 4 C -0.068 4.068 5 N -0.167 5.167 6 C -0.026 4.026 7 N -0.169 5.169 8 N -0.134 5.134 9 C -0.057 4.057 10 C -0.070 4.070 11 C -0.006 4.006 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.723 3.277 17 H -0.213 1.213 18 H -0.202 1.202 19 H -0.200 1.200 20 N -0.177 5.177 21 C -0.064 4.064 22 C -0.082 4.082 23 C -0.128 4.128 24 H 0.100 0.900 25 C -0.196 4.196 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.428 19.812 -1.343 20.586 hybrid contribution 1.378 -0.874 -1.131 1.985 sum -4.050 18.938 -2.474 19.523 Atomic orbital electron populations 1.21703 0.93838 1.02364 1.01947 1.22387 0.96165 0.99399 0.93657 0.89552 1.23128 0.85934 0.99827 0.97957 1.60305 1.30139 1.17720 1.08564 1.22598 0.85920 0.91988 1.02129 1.74415 1.24244 1.00801 1.17449 1.73988 1.04307 1.12824 1.22244 1.25550 0.97852 0.88342 0.93949 1.20430 0.92154 0.90596 1.03828 1.19057 0.98136 0.92067 0.91303 1.21114 1.15404 1.06605 1.13190 0.92326 1.25012 0.95834 0.98149 0.95239 1.69965 1.34679 1.32608 1.15890 0.86610 0.81531 0.81782 0.77808 1.21280 1.20215 1.20049 1.46061 1.14593 1.16695 1.40360 1.22027 0.86868 1.01630 0.95875 1.23094 0.98396 1.01829 0.84872 1.22439 0.95928 0.98868 0.95590 0.90040 1.21724 1.02007 0.99218 0.96689 0.92155 0.92296 0.92275 0.90090 0.89487 0.89307 0.91273 0.96853 0.95672 0.92824 0.90359 0.89546 0.88804 0.89350 0.91999 0.92260 0.92386 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.29 37.16 0.35 -0.76 16 2 C -0.10 -0.87 3.08 -88.49 -0.27 -1.14 16 3 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 4 C 0.06 0.70 5.95 -2.30 -0.01 0.69 16 5 N -0.44 -6.06 5.22 -171.31 -0.89 -6.95 16 6 C 0.33 5.79 6.87 -318.87 -2.19 3.60 16 7 N -0.32 -6.68 10.73 30.31 0.33 -6.35 16 8 N -0.30 -6.63 12.18 32.99 0.40 -6.22 16 9 C 0.21 4.32 7.32 -154.01 -1.13 3.19 16 10 C -0.03 -0.63 5.53 -27.88 -0.15 -0.78 16 11 C 0.03 0.83 4.96 -27.88 -0.14 0.70 16 12 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 16 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 N -0.48 -8.38 3.15 -121.45 -0.38 -8.76 16 21 C 0.08 1.02 9.99 59.85 0.60 1.61 16 22 C 0.05 0.52 5.61 -2.84 -0.02 0.50 16 23 C -0.11 -1.04 3.01 -88.80 -0.27 -1.30 16 24 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 25 C -0.14 -1.02 9.16 37.16 0.34 -0.68 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 29 H 0.08 1.15 6.81 -51.93 -0.35 0.80 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.07 1.27 7.26 -51.93 -0.38 0.89 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.90 8.13 -51.93 -0.42 0.48 16 38 H 0.09 1.12 7.24 -51.93 -0.38 0.75 16 39 H 0.09 0.84 7.77 -51.93 -0.40 0.43 16 40 H 0.06 0.83 7.26 -51.93 -0.38 0.45 16 41 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -32.85 346.78 -10.24 -43.09 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -7.33 Total: -2.91 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -3.31 Total: -7.50 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.19 Total: -54.08 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.85 -10.24 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121495130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.094 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds