Wall clock time and date at job start Tue Mar 31 2020 00:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47088 * 2 1 4 4 C 1.46502 * 119.99556 * 269.99898 * 3 2 1 5 5 C 1.53002 * 109.47060 * 269.99779 * 4 3 2 6 6 C 1.38986 * 120.00442 * 89.99648 * 3 2 1 7 7 C 1.39186 * 120.03999 * 5.02669 * 6 3 2 8 8 N 1.32029 * 120.07927 * 179.97438 * 7 6 3 9 9 C 1.32073 * 120.16939 * 359.66607 * 8 7 6 10 10 C 1.39132 * 120.08027 * 0.60716 * 9 8 7 11 11 N 1.39001 * 120.03695 * 179.68834 * 10 9 8 12 12 C 1.46498 * 119.99905 * 0.02562 * 11 10 9 13 13 C 1.52996 * 109.47059 * 179.72491 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46710 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47158 * 119.99784 * 19 17 15 22 22 H 1.48502 * 109.46769 * 240.00242 * 19 17 15 23 23 N 1.32723 * 120.04659 * 184.99828 * 6 3 2 24 24 H 1.09005 * 109.47000 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47388 * 300.00273 * 1 2 3 26 26 H 1.09003 * 109.47370 * 60.00606 * 1 2 3 27 27 H 1.09002 * 109.47388 * 239.99727 * 2 1 3 28 28 H 1.09001 * 109.47251 * 119.99933 * 2 1 3 29 29 H 1.09000 * 109.47587 * 29.99460 * 4 3 2 30 30 H 1.08996 * 109.47132 * 150.00072 * 4 3 2 31 31 H 1.09000 * 109.47370 * 60.00023 * 5 4 3 32 32 H 1.09001 * 109.47119 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47112 * 300.00362 * 5 4 3 34 34 H 1.07996 * 119.95687 * 359.97350 * 7 6 3 35 35 H 1.07995 * 119.95693 * 180.32519 * 9 8 7 36 36 H 0.97001 * 119.99650 * 179.72237 * 11 10 9 37 37 H 1.09004 * 109.46963 * 299.72287 * 12 11 10 38 38 H 1.08994 * 109.47567 * 59.72439 * 12 11 10 39 39 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 40 40 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 41 41 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 42 42 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 43 43 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0717 -1.2688 5 6 3.7075 1.8313 -1.7104 6 6 2.2499 2.0365 1.2036 7 6 2.1190 1.3499 2.4072 8 7 2.3394 1.9715 3.5510 9 6 2.6909 3.2446 3.5576 10 6 2.8182 3.9391 2.3588 11 7 3.1820 5.2806 2.3671 12 6 3.4321 5.9638 3.6386 13 6 3.8196 7.4190 3.3681 14 6 4.0802 8.1328 4.6961 15 6 4.4625 9.5659 4.4295 16 1 4.5139 9.9313 3.4145 17 6 4.7455 10.4110 5.4815 18 7 4.6824 9.9663 6.7176 19 14 5.2186 12.1877 5.1511 20 1 5.2175 12.4361 3.6871 21 1 4.2398 13.0909 5.8078 22 1 6.5754 12.4480 5.6958 23 7 2.5967 3.3177 1.2068 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6876 -2.0285 30 1 2.0955 3.1409 -1.1386 31 1 3.8745 0.7621 -1.8407 32 1 3.8893 2.3455 -2.6542 33 1 4.3883 2.2155 -0.9507 34 1 1.8369 0.3074 2.4055 35 1 2.8754 3.7482 4.4949 36 1 3.2745 5.7632 1.5307 37 1 2.5300 5.9357 4.2498 38 1 4.2442 5.4637 4.1662 39 1 4.7217 7.4472 2.7569 40 1 3.0075 7.9192 2.8404 41 1 3.1780 8.1046 5.3068 42 1 4.8922 7.6327 5.2240 43 1 4.8811 10.5609 7.4577 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:07 Heat of formation + Delta-G solvation = 41.561591 kcal Electronic energy + Delta-G solvation = -20958.013108 eV Core-core repulsion = 17844.896947 eV Total energy + Delta-G solvation = -3113.116161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87183 -37.95758 -36.34969 -34.10585 -33.28213 -32.36769 -31.59425 -29.91797 -28.13414 -26.56883 -24.56590 -24.23106 -23.07686 -22.52586 -20.66864 -20.37108 -17.77252 -17.61039 -16.41515 -16.25049 -15.91221 -15.64214 -15.14551 -14.63256 -14.47496 -14.26272 -13.99633 -13.97475 -13.52265 -12.86609 -12.75181 -12.32034 -12.20735 -12.17295 -11.99003 -11.85314 -11.40018 -11.34948 -11.20150 -11.01181 -10.94663 -10.75906 -10.57998 -10.50831 -9.83641 -9.53860 -9.15935 -8.89596 -8.40341 -8.33412 -7.35566 -6.04948 -4.07781 1.40492 1.59887 2.58853 3.28625 3.34150 3.36702 3.40672 4.08063 4.42369 4.47893 4.65797 4.69835 4.82822 4.84768 4.95976 5.05056 5.14573 5.21734 5.31299 5.31543 5.43257 5.49226 5.52332 5.55816 5.60788 5.64859 5.79562 5.85771 6.01522 6.02858 6.28574 6.51985 6.56118 6.65750 6.92636 7.03773 7.23453 7.59327 7.68043 7.71099 7.87438 7.93640 8.28165 8.35160 8.98895 9.56814 11.06372 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.033947 B = 0.002709 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.616837 B =10332.209718 C =10899.156287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.121 3.879 3 N -0.603 5.603 4 C 0.123 3.877 5 C -0.166 4.166 6 C 0.406 3.594 7 C -0.092 4.092 8 N -0.371 5.371 9 C -0.078 4.078 10 C 0.409 3.591 11 N -0.707 5.707 12 C 0.120 3.880 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.569 5.569 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.403 0.597 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 -20.387 -15.105 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.002 4.002 3 N -0.317 5.317 4 C 0.000 4.000 5 C -0.224 4.224 6 C 0.167 3.833 7 C -0.259 4.259 8 N -0.083 5.083 9 C -0.246 4.246 10 C 0.167 3.833 11 N -0.337 5.337 12 C -0.003 4.003 13 C -0.158 4.158 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.302 5.302 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.239 0.761 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.293 -20.317 -14.841 25.935 hybrid contribution 0.326 1.265 -0.500 1.399 sum -5.966 -19.052 -15.341 25.178 Atomic orbital electron populations 1.22240 0.96038 1.02165 1.02734 1.21476 0.94181 0.81438 1.03110 1.46525 1.69685 1.12965 1.02539 1.21340 0.95881 0.98776 0.84023 1.22143 0.97504 1.01357 1.01431 1.18945 0.89270 0.88068 0.87028 1.22582 1.14925 1.01318 0.87102 1.67979 1.03595 1.08466 1.28263 1.22726 1.12347 0.91897 0.97650 1.19108 0.88237 0.86542 0.89399 1.44934 1.72084 1.06303 1.10399 1.21804 1.00592 0.94235 0.83642 1.21871 1.00479 0.91218 1.02221 1.19037 0.97304 0.94702 0.90298 1.21231 1.46492 0.95479 0.92824 0.92591 1.25023 0.95530 0.98749 0.95139 1.69965 1.49286 1.35771 0.98277 0.86530 0.78143 0.84940 0.78355 1.19757 1.20972 1.20978 1.67257 1.25831 1.08727 1.28343 0.91485 0.92132 0.92442 0.90318 0.90177 0.91326 0.89568 0.93019 0.91874 0.92317 0.82851 0.82162 0.76116 0.91707 0.91716 0.92565 0.92566 0.96195 0.96201 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 37.16 0.38 -0.71 16 2 C 0.12 0.81 5.98 -4.04 -0.02 0.79 16 3 N -0.60 -5.94 2.59 -173.73 -0.45 -6.39 16 4 C 0.12 1.09 6.20 -4.04 -0.03 1.06 16 5 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 6 C 0.41 5.33 7.37 -154.74 -1.14 4.19 16 7 C -0.09 -1.22 10.42 -17.11 -0.18 -1.40 16 8 N -0.37 -5.70 10.48 -12.70 -0.13 -5.84 16 9 C -0.08 -1.20 10.48 -17.12 -0.18 -1.38 16 10 C 0.41 6.31 7.66 -154.72 -1.19 5.13 16 11 N -0.71 -10.50 5.73 -60.34 -0.35 -10.85 16 12 C 0.12 1.92 4.90 -4.04 -0.02 1.91 16 13 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 N -0.57 -8.43 9.28 -11.43 -0.11 -8.54 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 28 H 0.08 0.50 6.00 -51.93 -0.31 0.19 16 29 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.09 0.92 7.32 -51.93 -0.38 0.54 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.15 1.60 6.02 -52.49 -0.32 1.29 16 35 H 0.16 2.35 6.71 -52.49 -0.35 1.99 16 36 H 0.40 5.67 8.60 -40.82 -0.35 5.32 16 37 H 0.06 1.03 7.95 -51.93 -0.41 0.62 16 38 H 0.06 1.03 7.92 -51.93 -0.41 0.62 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -30.89 354.63 -9.80 -40.69 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.14 Total: 1.50 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.68 Total: -6.56 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.30 Total: -57.30 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.89 -9.80 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.247 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds