Wall clock time and date at job start Tue Mar 31 2020 01:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46915 * 2 1 4 4 C 1.50698 * 109.46877 * 119.99492 * 2 1 3 5 5 H 1.08003 * 119.99527 * 120.00582 * 4 2 1 6 6 C 1.37867 * 120.00173 * 300.00241 * 4 2 1 7 7 N 1.31524 * 120.00035 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00402 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47196 * 89.99718 * 8 6 4 10 10 H 1.48500 * 109.47531 * 210.00063 * 8 6 4 11 11 H 1.48503 * 109.47090 * 329.99890 * 8 6 4 12 12 N 1.46898 * 109.47155 * 239.99982 * 2 1 3 13 13 C 1.46902 * 111.00165 * 85.00157 * 12 2 1 14 14 C 1.53140 * 109.43119 * 75.42482 * 13 12 2 15 15 C 1.53709 * 108.88199 * 66.06733 * 14 13 12 16 16 H 1.08994 * 112.12708 * 187.72326 * 15 14 13 17 17 C 1.54604 * 107.81230 * 311.73638 * 15 14 13 18 18 C 1.57494 * 104.23142 * 88.76571 * 17 15 14 19 19 C 1.54602 * 104.22557 * 359.97438 * 18 17 15 20 20 H 1.08999 * 112.21897 * 147.29075 * 19 18 17 21 21 C 1.53135 * 109.42768 * 195.69250 * 13 12 2 22 22 N 1.48716 * 107.24347 * 64.09189 * 15 14 13 23 23 C 1.46893 * 111.52779 * 168.08286 * 22 15 14 24 24 C 1.52996 * 109.47191 * 284.78260 * 23 22 15 25 25 C 1.53005 * 117.49609 * 243.61937 * 24 23 22 26 26 C 1.53001 * 60.00002 * 252.51124 * 25 24 23 27 27 H 1.09006 * 109.47035 * 60.00420 * 1 2 3 28 28 H 1.08999 * 109.46835 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47649 * 300.00393 * 1 2 3 30 30 H 0.96996 * 119.99847 * 179.97438 * 7 6 4 31 31 H 1.00897 * 111.00271 * 321.04275 * 12 2 1 32 32 H 1.09004 * 109.42899 * 315.58483 * 13 12 2 33 33 H 1.09001 * 109.56730 * 185.88624 * 14 13 12 34 34 H 1.08999 * 109.56894 * 306.12820 * 14 13 12 35 35 H 1.09005 * 110.36618 * 207.40246 * 17 15 14 36 36 H 1.09002 * 110.36619 * 329.72055 * 17 15 14 37 37 H 1.09003 * 110.29736 * 241.53136 * 18 17 15 38 38 H 1.09000 * 111.02043 * 118.81537 * 18 17 15 39 39 H 1.09005 * 109.56534 * 174.11087 * 21 13 12 40 40 H 1.08997 * 109.56863 * 53.75417 * 21 13 12 41 41 H 1.09002 * 109.46925 * 44.78270 * 23 22 15 42 42 H 1.09000 * 109.47091 * 164.77683 * 23 22 15 43 43 H 1.08997 * 115.55130 * 29.33009 * 24 23 22 44 44 H 1.08996 * 117.50325 * 0.02562 * 25 24 23 45 45 H 1.09003 * 117.49539 * 145.01859 * 25 24 23 46 46 H 1.09000 * 117.49625 * 252.51583 * 26 25 24 47 47 H 1.08994 * 117.49998 * 107.49430 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6991 -0.2392 2.4827 7 7 2.1379 -0.8589 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9757 1.9952 3.9067 11 1 0.8469 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 3.2932 1.1479 -2.1949 15 6 4.5767 0.3080 -2.2940 16 1 5.4676 0.8903 -2.0591 17 6 4.4150 -0.9147 -1.3617 18 6 3.7346 -2.0068 -2.2698 19 6 3.5674 -1.3109 -3.6402 20 1 3.6594 -2.0100 -4.4714 21 6 2.2110 -0.5890 -3.6391 22 7 4.6242 -0.2645 -3.6657 23 6 5.9387 -0.8502 -3.9602 24 6 6.9482 0.2688 -4.2240 25 6 7.5682 0.3460 -5.6206 26 6 8.4092 -0.1333 -4.4357 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9039 -0.5272 4.4375 31 1 1.4496 -1.4979 -1.4100 32 1 1.1722 0.8211 -2.3837 33 1 3.2836 1.8950 -2.9886 34 1 3.2538 1.6445 -1.2255 35 1 5.3895 -1.2594 -1.0156 36 1 3.7776 -0.6635 -0.5139 37 1 2.7615 -2.2834 -1.8639 38 1 4.3705 -2.8868 -2.3660 39 1 2.1528 0.0801 -4.4977 40 1 1.4068 -1.3229 -3.6908 41 1 6.2701 -1.4454 -3.1092 42 1 5.8635 -1.4871 -4.8416 43 1 6.7547 1.2082 -3.7062 44 1 7.2567 -0.4001 -6.3516 45 1 7.7825 1.3365 -6.0220 46 1 9.1767 0.5420 -4.0575 47 1 8.6512 -1.1949 -4.3870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167974305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:33 Heat of formation + Delta-G solvation = 72.737184 kcal Electronic energy + Delta-G solvation = -23660.681905 eV Core-core repulsion = 20652.457962 eV Total energy + Delta-G solvation = -3008.223943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63769 -37.49980 -35.81326 -32.98828 -31.33527 -30.89902 -29.93734 -28.20887 -25.42952 -25.07631 -23.74305 -22.40158 -21.87121 -20.99034 -19.95626 -19.34028 -18.15006 -16.76611 -16.40846 -15.57105 -15.13046 -14.79243 -14.38073 -13.91769 -13.84437 -13.28157 -13.09556 -12.83630 -12.60978 -12.42899 -12.21684 -12.03255 -11.94370 -11.84813 -11.58241 -11.27409 -11.19897 -11.09644 -10.56303 -10.47417 -10.26902 -10.13585 -10.10688 -9.98316 -9.83515 -9.67698 -9.49321 -9.33175 -9.09769 -8.56579 -8.07700 -7.06130 -6.05340 -4.02696 3.25141 3.35599 3.38148 3.76368 4.24410 4.39990 4.75046 4.91716 4.95575 5.01944 5.14626 5.24265 5.26031 5.43605 5.52098 5.56288 5.59269 5.65043 5.67816 5.81448 5.84608 5.86760 5.89876 5.92725 6.05953 6.14232 6.16045 6.20550 6.25915 6.29144 6.38018 6.44232 6.47599 6.55255 6.61354 6.65898 6.77597 6.84896 7.07836 7.12558 7.23902 7.50507 7.72401 7.78923 7.92329 8.30123 8.67642 9.05387 9.58061 11.07775 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.026553 B = 0.004918 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.251396 B = 5692.371376 C = 6020.078104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.171 3.829 3 H 0.036 0.964 4 C -0.497 4.497 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.885 3.115 9 H -0.283 1.283 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.649 5.649 13 C 0.083 3.917 14 C -0.094 4.094 15 C 0.069 3.931 16 H 0.076 0.924 17 C -0.140 4.140 18 C -0.133 4.133 19 C 0.064 3.936 20 H 0.075 0.925 21 C -0.102 4.102 22 N -0.506 5.506 23 C 0.078 3.922 24 C -0.136 4.136 25 C -0.178 4.178 26 C -0.186 4.186 27 H 0.025 0.975 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.328 0.672 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.144 0.856 37 H 0.097 0.903 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 1.354 -16.199 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.062 3.938 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.716 3.284 9 H -0.210 1.210 10 H -0.226 1.226 11 H -0.195 1.195 12 N -0.282 5.282 13 C -0.027 4.027 14 C -0.133 4.133 15 C -0.039 4.039 16 H 0.094 0.906 17 C -0.178 4.178 18 C -0.172 4.172 19 C -0.044 4.044 20 H 0.094 0.906 21 C -0.140 4.140 22 N -0.229 5.229 23 C -0.051 4.051 24 C -0.154 4.154 25 C -0.215 4.215 26 C -0.223 4.223 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.162 0.838 37 H 0.115 0.885 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.789 1.851 -16.274 17.372 hybrid contribution -1.379 0.334 0.610 1.545 sum 4.409 2.184 -15.665 16.419 Atomic orbital electron populations 1.22845 1.01750 1.00711 0.98736 1.19818 0.88454 0.95527 0.89998 0.94621 1.20961 1.31168 1.13689 0.87672 0.89864 1.24934 0.95892 0.96461 0.95988 1.69886 1.45862 1.40301 0.97840 0.86916 0.80594 0.84101 0.76792 1.20984 1.22620 1.19517 1.61949 1.55038 1.08211 1.02975 1.21475 0.96453 0.94053 0.90755 1.21669 0.93760 0.96702 1.01128 1.22886 0.97027 0.96759 0.87213 0.90562 1.23837 0.98973 0.93172 1.01857 1.23540 1.02525 0.96796 0.94324 1.22918 0.91925 0.92203 0.97368 0.90644 1.21781 0.95967 0.98782 0.97473 1.65357 1.03047 1.27401 1.27130 1.21654 0.89276 0.94265 0.99903 1.22235 0.92950 1.00898 0.99336 1.22956 1.04681 1.02301 0.91565 1.22955 0.94283 1.01671 1.03417 0.95616 0.92882 0.93867 0.92757 0.85196 0.95151 0.92381 0.91321 0.95573 0.83840 0.88471 0.94857 0.91583 0.92240 0.93902 0.91670 0.87685 0.89128 0.89265 0.89057 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 8.63 37.16 0.32 -3.42 16 2 C 0.17 3.71 1.55 -68.87 -0.11 3.60 16 3 H 0.04 0.82 5.46 -51.93 -0.28 0.54 16 4 C -0.50 -13.07 8.47 -34.44 -0.29 -13.36 16 5 H 0.08 2.41 7.78 -52.48 -0.41 2.00 16 6 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 7 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 8 Si 0.88 21.54 24.37 -169.99 -4.14 17.40 16 9 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 10 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 12 N -0.65 -11.64 1.20 -100.80 -0.12 -11.76 16 13 C 0.08 1.31 2.69 -67.57 -0.18 1.13 16 14 C -0.09 -1.52 5.31 -26.29 -0.14 -1.66 16 15 C 0.07 1.09 3.45 -65.49 -0.23 0.86 16 16 H 0.08 1.19 7.07 -51.93 -0.37 0.82 16 17 C -0.14 -2.47 5.32 -23.44 -0.12 -2.59 16 18 C -0.13 -2.08 5.57 -23.44 -0.13 -2.21 16 19 C 0.06 0.89 3.62 -65.51 -0.24 0.66 16 20 H 0.08 0.97 7.98 -51.93 -0.41 0.55 16 21 C -0.10 -1.39 5.32 -26.32 -0.14 -1.53 16 22 N -0.51 -7.14 4.93 -212.99 -1.05 -8.19 16 23 C 0.08 1.00 4.96 -3.83 -0.02 0.98 16 24 C -0.14 -1.59 5.67 -90.62 -0.51 -2.10 16 25 C -0.18 -1.79 10.18 -26.73 -0.27 -2.06 16 26 C -0.19 -1.87 10.25 -26.73 -0.27 -2.15 16 27 H 0.02 0.46 7.35 -51.93 -0.38 0.08 16 28 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 29 H 0.04 0.95 3.27 -51.93 -0.17 0.79 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.33 5.65 6.65 -39.29 -0.26 5.39 16 32 H 0.03 0.50 7.17 -51.93 -0.37 0.13 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.22 6.67 -51.93 -0.35 0.88 16 35 H 0.03 0.47 7.93 -51.93 -0.41 0.06 16 36 H 0.14 3.01 3.89 -51.93 -0.20 2.81 16 37 H 0.10 1.59 4.80 -51.93 -0.25 1.35 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 41 H 0.04 0.60 6.99 -51.93 -0.36 0.24 16 42 H 0.06 0.79 7.70 -51.93 -0.40 0.39 16 43 H 0.11 1.33 7.22 -51.93 -0.37 0.95 16 44 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 330.67 15.07 4.98 4.98 Total: -1.00 -27.32 330.67 -9.97 -37.29 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.98 Total: 8.45 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -2.43 Total: -22.04 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.40 Total: -46.08 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.32 -9.97 -37.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167974305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.031 kcal (2) G-P(sol) polarization free energy of solvation -27.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds