Wall clock time and date at job start Tue Mar 31 2020 01:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46915 * 2 1 4 4 C 1.50698 * 109.46877 * 119.99492 * 2 1 3 5 5 H 1.08003 * 119.99527 * 120.00582 * 4 2 1 6 6 C 1.37867 * 120.00173 * 300.00241 * 4 2 1 7 7 N 1.31524 * 120.00035 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00402 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47196 * 89.99718 * 8 6 4 10 10 H 1.48500 * 109.47531 * 210.00063 * 8 6 4 11 11 H 1.48503 * 109.47090 * 329.99890 * 8 6 4 12 12 N 1.46898 * 109.47155 * 239.99982 * 2 1 3 13 13 C 1.46902 * 111.00165 * 85.00157 * 12 2 1 14 14 C 1.53140 * 109.43119 * 75.42482 * 13 12 2 15 15 C 1.53709 * 108.88199 * 66.06733 * 14 13 12 16 16 H 1.08994 * 112.12708 * 187.72326 * 15 14 13 17 17 C 1.54604 * 107.81230 * 311.73638 * 15 14 13 18 18 C 1.57494 * 104.23142 * 88.76571 * 17 15 14 19 19 C 1.54602 * 104.22557 * 359.97438 * 18 17 15 20 20 H 1.08999 * 112.21897 * 147.29075 * 19 18 17 21 21 C 1.53135 * 109.42768 * 195.69250 * 13 12 2 22 22 N 1.48716 * 107.24347 * 64.09189 * 15 14 13 23 23 C 1.46893 * 111.52779 * 168.08286 * 22 15 14 24 24 C 1.52996 * 109.47191 * 284.78260 * 23 22 15 25 25 C 1.53005 * 117.49609 * 243.61937 * 24 23 22 26 26 C 1.53001 * 60.00002 * 252.51124 * 25 24 23 27 27 H 1.09006 * 109.47035 * 60.00420 * 1 2 3 28 28 H 1.08999 * 109.46835 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47649 * 300.00393 * 1 2 3 30 30 H 0.96996 * 119.99847 * 179.97438 * 7 6 4 31 31 H 1.00897 * 111.00271 * 321.04275 * 12 2 1 32 32 H 1.09004 * 109.42899 * 315.58483 * 13 12 2 33 33 H 1.09001 * 109.56730 * 185.88624 * 14 13 12 34 34 H 1.08999 * 109.56894 * 306.12820 * 14 13 12 35 35 H 1.09005 * 110.36618 * 207.40246 * 17 15 14 36 36 H 1.09002 * 110.36619 * 329.72055 * 17 15 14 37 37 H 1.09003 * 110.29736 * 241.53136 * 18 17 15 38 38 H 1.09000 * 111.02043 * 118.81537 * 18 17 15 39 39 H 1.09005 * 109.56534 * 174.11087 * 21 13 12 40 40 H 1.08997 * 109.56863 * 53.75417 * 21 13 12 41 41 H 1.09002 * 109.46925 * 44.78270 * 23 22 15 42 42 H 1.09000 * 109.47091 * 164.77683 * 23 22 15 43 43 H 1.08997 * 115.55130 * 29.33009 * 24 23 22 44 44 H 1.08996 * 117.50325 * 0.02562 * 25 24 23 45 45 H 1.09003 * 117.49539 * 145.01859 * 25 24 23 46 46 H 1.09000 * 117.49625 * 252.51583 * 26 25 24 47 47 H 1.08994 * 117.49998 * 107.49430 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6991 -0.2392 2.4827 7 7 2.1379 -0.8589 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9757 1.9952 3.9067 11 1 0.8469 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 3.2932 1.1479 -2.1949 15 6 4.5767 0.3080 -2.2940 16 1 5.4676 0.8903 -2.0591 17 6 4.4150 -0.9147 -1.3617 18 6 3.7346 -2.0068 -2.2698 19 6 3.5674 -1.3109 -3.6402 20 1 3.6594 -2.0100 -4.4714 21 6 2.2110 -0.5890 -3.6391 22 7 4.6242 -0.2645 -3.6657 23 6 5.9387 -0.8502 -3.9602 24 6 6.9482 0.2688 -4.2240 25 6 7.5682 0.3460 -5.6206 26 6 8.4092 -0.1333 -4.4357 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9039 -0.5272 4.4375 31 1 1.4496 -1.4979 -1.4100 32 1 1.1722 0.8211 -2.3837 33 1 3.2836 1.8950 -2.9886 34 1 3.2538 1.6445 -1.2255 35 1 5.3895 -1.2594 -1.0156 36 1 3.7776 -0.6635 -0.5139 37 1 2.7615 -2.2834 -1.8639 38 1 4.3705 -2.8868 -2.3660 39 1 2.1528 0.0801 -4.4977 40 1 1.4068 -1.3229 -3.6908 41 1 6.2701 -1.4454 -3.1092 42 1 5.8635 -1.4871 -4.8416 43 1 6.7547 1.2082 -3.7062 44 1 7.2567 -0.4001 -6.3516 45 1 7.7825 1.3365 -6.0220 46 1 9.1767 0.5420 -4.0575 47 1 8.6512 -1.1949 -4.3870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167974305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:32 Heat of formation + Delta-G solvation = 56.995055 kcal Electronic energy + Delta-G solvation = -23661.364534 eV Core-core repulsion = 20652.457962 eV Total energy + Delta-G solvation = -3008.906572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89726 -38.50931 -37.23075 -34.71903 -33.01623 -32.15048 -31.21916 -29.69042 -27.06248 -26.55322 -24.99502 -23.22948 -23.12630 -22.46031 -21.18972 -20.61152 -19.52869 -18.50579 -17.77486 -17.01887 -16.53781 -16.09406 -15.55037 -15.31975 -15.13009 -14.69711 -14.60942 -14.24991 -14.16430 -13.87174 -13.56698 -13.38475 -13.31399 -13.19531 -12.85902 -12.58485 -12.36820 -12.26813 -12.23806 -11.98043 -11.66272 -11.47966 -11.42171 -11.32595 -11.07033 -11.00716 -10.95908 -10.79095 -10.72610 -10.65705 -9.25902 -8.52766 -8.21353 -6.21205 1.30568 1.36670 1.45376 2.35376 2.86770 3.13742 3.20968 3.53660 3.77767 3.94912 3.99559 4.09363 4.16205 4.31703 4.40015 4.42093 4.46735 4.52859 4.57558 4.57873 4.63824 4.64461 4.73127 4.75250 4.80975 4.82645 4.90965 4.97560 5.03920 5.08051 5.19756 5.27173 5.28242 5.30519 5.31397 5.35579 5.40508 5.45687 5.46946 5.70113 5.81166 5.97961 6.13371 6.28499 6.35969 6.76414 6.84294 6.87743 7.43842 8.95550 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.026553 B = 0.004918 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.251396 B = 5692.371376 C = 6020.078104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.179 3.821 3 H 0.027 0.973 4 C -0.485 4.485 5 H 0.043 0.957 6 C 0.010 3.990 7 N -0.953 5.953 8 Si 0.946 3.054 9 H -0.273 1.273 10 H -0.306 1.306 11 H -0.252 1.252 12 N -0.649 5.649 13 C 0.083 3.917 14 C -0.093 4.093 15 C 0.076 3.924 16 H 0.072 0.928 17 C -0.142 4.142 18 C -0.128 4.128 19 C 0.069 3.931 20 H 0.097 0.903 21 C -0.094 4.094 22 N -0.500 5.500 23 C 0.081 3.919 24 C -0.154 4.154 25 C -0.165 4.165 26 C -0.182 4.182 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.334 0.666 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.008 0.992 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.033 0.967 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.025 0.975 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 2.192 -19.427 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.069 3.931 3 H 0.045 0.955 4 C -0.524 4.524 5 H 0.061 0.939 6 C -0.187 4.187 7 N -0.594 5.594 8 Si 0.775 3.225 9 H -0.199 1.199 10 H -0.234 1.234 11 H -0.177 1.177 12 N -0.282 5.282 13 C -0.027 4.027 14 C -0.131 4.131 15 C -0.033 4.033 16 H 0.090 0.910 17 C -0.181 4.181 18 C -0.167 4.167 19 C -0.040 4.040 20 H 0.115 0.885 21 C -0.132 4.132 22 N -0.222 5.222 23 C -0.048 4.048 24 C -0.173 4.173 25 C -0.202 4.202 26 C -0.219 4.219 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.971 2.689 -19.544 20.344 hybrid contribution -1.003 -0.010 1.579 1.871 sum 3.968 2.679 -17.965 18.592 Atomic orbital electron populations 1.22730 1.00126 1.01225 0.99521 1.19525 0.89435 0.94441 0.89658 0.95513 1.21231 1.29331 1.12128 0.89710 0.93908 1.25713 0.97634 0.99578 0.95746 1.70047 1.48369 1.42596 0.98411 0.85914 0.79123 0.80689 0.76814 1.19915 1.23424 1.17664 1.61846 1.54932 1.08574 1.02812 1.21550 0.96304 0.93947 0.90869 1.21640 0.94068 0.97043 1.00359 1.22741 0.96912 0.95841 0.87785 0.90972 1.23718 0.97476 0.95171 1.01694 1.23457 1.01726 0.96300 0.95202 1.22981 0.92141 0.92253 0.96609 0.88451 1.21751 0.96167 0.99031 0.96260 1.65381 1.03895 1.27606 1.25327 1.21667 0.88805 0.94635 0.99674 1.22147 0.93847 1.00131 1.01165 1.23025 1.03296 1.03025 0.90868 1.23026 0.93423 1.02163 1.03308 0.92491 0.92613 0.95219 0.92977 0.84536 0.94733 0.90823 0.93692 0.97321 0.87214 0.89215 0.94823 0.90124 0.90529 0.95655 0.90284 0.88948 0.88252 0.88397 0.88410 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.91 8.63 71.98 0.62 -6.29 16 2 C 0.18 7.68 1.55 44.17 0.07 7.75 16 3 H 0.03 1.22 5.46 -2.38 -0.01 1.21 16 4 C -0.49 -26.33 8.47 25.60 0.22 -26.11 16 5 H 0.04 2.62 7.78 -2.91 -0.02 2.59 16 6 C 0.01 0.54 5.45 84.65 0.46 1.00 16 7 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 8 Si 0.95 44.81 24.37 68.60 1.67 46.48 16 9 H -0.27 -12.40 6.87 99.48 0.68 -11.71 16 10 H -0.31 -14.75 7.11 99.48 0.71 -14.04 16 11 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 12 N -0.65 -22.77 1.20 -472.83 -0.57 -23.34 16 13 C 0.08 2.44 2.69 45.01 0.12 2.56 16 14 C -0.09 -2.87 5.31 30.88 0.16 -2.71 16 15 C 0.08 2.35 3.45 45.35 0.16 2.51 16 16 H 0.07 2.28 7.07 -2.39 -0.02 2.26 16 17 C -0.14 -5.13 5.32 32.73 0.17 -4.95 16 18 C -0.13 -3.91 5.57 32.73 0.18 -3.72 16 19 C 0.07 1.71 3.62 45.32 0.16 1.88 16 20 H 0.10 2.10 7.98 -2.39 -0.02 2.08 16 21 C -0.09 -2.22 5.32 30.86 0.16 -2.06 16 22 N -0.50 -13.08 4.93 -827.76 -4.08 -17.15 16 23 C 0.08 1.93 4.96 86.30 0.43 2.36 16 24 C -0.15 -3.38 5.67 -10.79 -0.06 -3.44 16 25 C -0.17 -2.89 10.18 30.60 0.31 -2.58 16 26 C -0.18 -3.33 10.25 30.60 0.31 -3.02 16 27 H 0.06 1.86 7.35 -2.38 -0.02 1.85 16 28 H 0.05 2.12 8.13 -2.39 -0.02 2.10 16 29 H 0.03 1.23 3.27 -2.39 -0.01 1.23 16 30 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.33 11.07 6.65 -89.70 -0.60 10.47 16 32 H 0.03 1.02 7.17 -2.38 -0.02 1.00 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.59 6.67 -2.39 -0.02 1.58 16 35 H 0.01 0.31 7.93 -2.38 -0.02 0.29 16 36 H 0.11 4.81 3.89 -2.39 -0.01 4.80 16 37 H 0.09 2.89 4.80 -2.39 -0.01 2.87 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.08 1.60 8.03 -2.39 -0.02 1.58 16 41 H 0.03 0.70 6.99 -2.39 -0.02 0.68 16 42 H 0.08 1.68 7.70 -2.39 -0.02 1.67 16 43 H 0.09 2.26 7.22 -2.39 -0.02 2.24 16 44 H 0.10 1.58 8.03 -2.39 -0.02 1.56 16 45 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -60.83 330.67 1.09 -59.74 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.28 Total: 30.03 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 3.49 Total: -36.82 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -4.35 Total: -99.44 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.67 Total: 46.48 kcal Total: -60.83 1.09 -59.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167974305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.737 kcal (2) G-P(sol) polarization free energy of solvation -60.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds