Wall clock time and date at job start Tue Mar 31 2020 00:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47133 * 2 1 4 4 N 1.46497 * 109.46984 * 179.97438 * 3 2 1 5 5 C 1.38534 * 119.99654 * 180.02562 * 4 3 2 6 6 C 1.39684 * 120.48798 * 359.97438 * 5 4 3 7 7 C 1.38086 * 118.48972 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.35284 * 180.02562 * 7 6 5 9 9 N 1.32519 * 119.29387 * 0.02562 * 7 6 5 10 10 C 1.32464 * 120.93158 * 359.97438 * 9 7 6 11 11 N 1.38400 * 119.17904 * 180.02562 * 10 9 7 12 12 C 1.46498 * 119.99560 * 0.28180 * 11 10 9 13 13 C 1.52996 * 109.47059 * 179.72332 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47037 * 60.00067 * 19 17 15 21 21 H 1.48495 * 109.46817 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46854 * 299.99817 * 19 17 15 23 23 N 1.32475 * 121.64876 * 0.27982 * 10 9 7 24 24 H 1.08996 * 109.47396 * 299.99664 * 1 2 3 25 25 H 1.08996 * 109.47339 * 59.99964 * 1 2 3 26 26 H 1.09009 * 109.46994 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47091 * 239.99681 * 2 1 3 28 28 H 1.09005 * 109.47184 * 119.99761 * 2 1 3 29 29 H 1.09009 * 109.47235 * 60.00144 * 3 2 1 30 30 H 1.08996 * 109.47037 * 300.00221 * 3 2 1 31 31 H 0.96992 * 120.00266 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.75394 * 0.04626 * 6 5 4 33 33 H 1.08994 * 109.47581 * 269.98125 * 8 7 6 34 34 H 1.09001 * 109.46752 * 29.98176 * 8 7 6 35 35 H 1.08999 * 109.47141 * 149.97936 * 8 7 6 36 36 H 0.97001 * 119.99995 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.46963 * 299.72128 * 12 11 10 38 38 H 1.08994 * 109.47567 * 59.72280 * 12 11 10 39 39 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 40 40 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 41 41 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 42 42 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 43 43 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.1976 2.6422 0.0013 6 6 3.5094 3.8578 0.0008 7 6 4.2411 5.0289 0.0009 8 6 3.5417 6.3638 0.0010 9 7 5.5648 4.9664 0.0010 10 6 6.1914 3.7993 0.0014 11 7 7.5752 3.7763 0.0020 12 6 8.3285 5.0328 0.0084 13 6 9.8279 4.7284 0.0146 14 6 10.6147 6.0406 0.0206 15 6 12.0915 5.7407 0.0274 16 1 12.4347 4.7167 0.0270 17 6 13.0047 6.7737 0.0331 18 7 12.5869 8.0208 0.0330 19 14 14.8354 6.4021 0.0408 20 1 15.1867 5.6194 -1.1713 21 1 15.5990 7.6756 0.0455 22 1 15.1757 5.6157 1.2537 23 7 5.5266 2.6534 -0.0037 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 3.9899 0.6025 0.0006 32 1 2.4297 3.8811 0.0007 33 1 3.3734 6.6859 -1.0265 34 1 2.5846 6.2724 0.5145 35 1 4.1612 7.0985 0.5153 36 1 8.0462 2.9284 0.0027 37 1 8.0788 5.6106 -0.8815 38 1 8.0706 5.6066 0.8984 39 1 10.0776 4.1505 0.9045 40 1 10.0859 4.1545 -0.8754 41 1 10.3649 6.6180 -0.8694 42 1 10.3568 6.6147 0.9106 43 1 13.2293 8.7475 0.0366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:24 Heat of formation + Delta-G solvation = 27.147313 kcal Electronic energy + Delta-G solvation = -20457.025028 eV Core-core repulsion = 17343.283817 eV Total energy + Delta-G solvation = -3113.741211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71915 -37.50947 -36.13253 -34.35628 -33.79713 -32.56196 -31.09221 -30.02331 -28.06315 -26.68519 -26.12234 -23.33954 -22.51913 -21.88553 -21.48883 -20.23952 -17.90887 -17.25284 -16.26747 -16.03471 -15.77920 -15.32137 -15.25668 -14.99246 -14.46665 -14.33179 -14.01268 -13.49918 -13.45798 -13.00753 -12.98493 -12.41762 -12.27632 -12.21060 -12.00246 -11.73970 -11.61039 -11.46159 -10.94717 -10.76312 -10.70507 -10.57610 -10.51275 -10.03853 -9.68126 -9.43040 -9.09461 -8.85499 -8.44834 -8.32954 -7.66872 -5.97952 -4.00623 1.48126 1.69510 2.74315 3.35116 3.39336 3.41326 3.46835 4.19225 4.33042 4.43006 4.48526 4.49175 4.69853 4.91075 5.10529 5.12505 5.14551 5.30249 5.36885 5.37643 5.47511 5.51787 5.57329 5.63023 5.69622 5.76995 5.87913 5.89707 5.91094 6.25197 6.28723 6.59099 6.70130 6.84950 7.03848 7.26054 7.41205 7.53989 7.68268 7.81909 7.90263 8.01362 8.42941 8.76534 9.05759 9.63117 11.13261 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.036168 B = 0.002477 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.970623 B =11303.081764 C =12030.065495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.128 3.872 4 N -0.719 5.719 5 C 0.474 3.526 6 C -0.358 4.358 7 C 0.240 3.760 8 C -0.103 4.103 9 N -0.599 5.599 10 C 0.606 3.394 11 N -0.693 5.693 12 C 0.137 3.863 13 C -0.123 4.123 14 C 0.026 3.974 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.636 5.636 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.404 0.596 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.410 0.590 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.842 -12.488 -0.078 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.004 3.996 4 N -0.353 5.353 5 C 0.228 3.772 6 C -0.389 4.389 7 C 0.094 3.906 8 C -0.161 4.161 9 N -0.327 5.327 10 C 0.248 3.752 11 N -0.327 5.327 12 C 0.013 3.987 13 C -0.161 4.161 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 N -0.371 5.371 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.240 0.760 32 H 0.149 0.851 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.246 0.754 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.874 -12.067 -0.085 27.646 hybrid contribution 0.547 -0.903 -0.004 1.056 sum -24.326 -12.970 -0.090 27.568 Atomic orbital electron populations 1.21676 0.94391 1.02298 1.02325 1.21716 0.96908 0.95770 1.03030 1.21442 0.78786 0.97608 1.01767 1.44378 1.05434 1.05283 1.80204 1.18049 0.87244 0.86359 0.85532 1.21470 1.01134 0.92146 1.24163 1.21052 0.88403 0.95218 0.85926 1.20725 0.99499 0.92573 1.03295 1.67848 1.10081 1.27233 1.27507 1.18943 0.87018 0.83414 0.85820 1.44530 0.99993 1.10641 1.77553 1.21582 0.91441 0.83725 1.01915 1.21914 0.91248 1.02015 1.00895 1.19006 0.93920 0.90593 0.97642 1.21184 0.91334 0.92640 1.50865 0.92717 1.25026 0.99006 0.95108 0.95332 1.69955 1.34339 0.98408 1.50615 0.86645 0.85219 0.77459 0.78581 1.20275 1.21289 1.20266 1.67226 1.07363 1.30383 1.32123 0.92294 0.92289 0.92118 0.91165 0.91164 0.91750 0.91748 0.76042 0.85093 0.90002 0.90646 0.89991 0.75371 0.91861 0.91869 0.92778 0.92777 0.96240 0.96246 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.91 37.16 0.37 -0.21 16 2 C -0.14 -0.66 6.05 -26.73 -0.16 -0.82 16 3 C 0.13 0.85 4.92 -4.04 -0.02 0.83 16 4 N -0.72 -7.04 5.71 -60.28 -0.34 -7.38 16 5 C 0.47 6.42 7.71 -154.84 -1.19 5.23 16 6 C -0.36 -4.48 9.06 -39.10 -0.35 -4.83 16 7 C 0.24 3.35 6.81 -82.35 -0.56 2.79 16 8 C -0.10 -1.03 10.21 36.01 0.37 -0.67 16 9 N -0.60 -10.29 9.52 -10.24 -0.10 -10.38 16 10 C 0.61 10.59 8.42 -322.88 -2.72 7.87 16 11 N -0.69 -11.81 5.70 -62.33 -0.36 -12.17 16 12 C 0.14 2.54 5.65 -4.04 -0.02 2.52 16 13 C -0.12 -2.53 5.27 -26.73 -0.14 -2.67 16 14 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 15 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 N -0.64 -10.26 10.49 -13.16 -0.14 -10.40 16 24 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.21 8.14 -51.92 -0.42 -0.21 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.42 7.97 -51.92 -0.41 0.00 16 30 H 0.06 0.42 7.97 -51.93 -0.41 0.00 16 31 H 0.40 3.67 8.60 -40.82 -0.35 3.32 16 32 H 0.13 1.25 6.85 -52.49 -0.36 0.89 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.41 6.39 8.59 -40.82 -0.35 6.04 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -32.68 359.09 -12.14 -44.82 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.35 Total: 2.69 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -4.99 Total: -3.07 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -0.20 Total: -66.67 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.68 -12.14 -44.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.965 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds