Wall clock time and date at job start Tue Mar 31 2020 00:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46909 * 109.46970 * 2 1 4 4 C 1.46901 * 111.00003 * 66.04676 * 3 2 1 5 5 C 1.38532 * 111.00074 * 189.99877 * 3 2 1 6 6 N 1.32925 * 120.48675 * 297.67316 * 5 3 2 7 7 C 1.32443 * 120.61667 * 180.02562 * 6 5 3 8 8 N 1.38395 * 119.18134 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99951 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47099 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47444 * 179.97438 * 10 9 8 12 12 C 1.50692 * 109.47461 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00222 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00316 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99734 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00011 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47160 * 59.99894 * 16 14 12 18 18 H 1.48502 * 109.46961 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47195 * 299.99377 * 16 14 12 20 20 N 1.32495 * 121.64101 * 359.74817 * 7 6 5 21 21 C 1.32491 * 120.93338 * 0.51446 * 20 7 6 22 22 C 1.38134 * 119.28860 * 359.49503 * 21 20 7 23 23 C 1.50698 * 120.75689 * 180.27356 * 22 21 20 24 24 H 1.08999 * 109.47048 * 299.99801 * 1 2 3 25 25 H 1.08994 * 109.47516 * 59.99912 * 1 2 3 26 26 H 1.09006 * 109.46862 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47454 * 239.99874 * 2 1 3 28 28 H 1.08997 * 109.47593 * 119.99552 * 2 1 3 29 29 H 1.08993 * 109.47014 * 178.45353 * 4 3 2 30 30 H 1.09001 * 109.46966 * 298.45676 * 4 3 2 31 31 H 1.09005 * 109.47006 * 58.44704 * 4 3 2 32 32 H 0.96998 * 119.99932 * 0.02562 * 8 7 6 33 33 H 1.09001 * 109.46915 * 299.99953 * 9 8 7 34 34 H 1.08993 * 109.47560 * 60.00084 * 9 8 7 35 35 H 1.08998 * 109.47210 * 300.00393 * 10 9 8 36 36 H 1.09007 * 109.46951 * 59.99357 * 10 9 8 37 37 H 1.09001 * 109.46966 * 299.99949 * 11 10 9 38 38 H 1.08995 * 109.46705 * 59.99627 * 11 10 9 39 39 H 0.97003 * 119.99916 * 179.97438 * 15 14 12 40 40 H 1.07996 * 120.35955 * 179.76797 * 21 20 7 41 41 H 1.08999 * 109.47264 * 89.22715 * 23 22 21 42 42 H 1.08997 * 109.46927 * 209.23410 * 23 22 21 43 43 H 1.09006 * 109.46869 * 329.22927 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6701 2.0670 1.2533 5 6 3.3859 1.4286 -0.2246 6 7 4.2286 0.8603 0.6321 7 6 5.5353 0.9008 0.4202 8 7 6.3857 0.2998 1.3317 9 6 7.8342 0.3343 1.1153 10 6 8.5384 -0.3973 2.2598 11 6 10.0512 -0.3618 2.0335 12 6 10.7447 -1.0829 3.1603 13 1 10.1647 -1.5223 3.9584 14 6 12.1200 -1.1809 3.1731 15 7 12.8264 -0.6455 2.2016 16 14 12.9797 -2.0742 4.5704 17 1 12.5190 -3.4853 4.6135 18 1 14.4480 -2.0399 4.3507 19 1 12.6557 -1.4081 5.8574 20 7 6.0485 1.4987 -0.6450 21 6 5.2671 2.0899 -1.5368 22 6 3.8981 2.0708 -1.3539 23 6 2.9781 2.7274 -2.3506 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 2.0681 3.0815 1.2381 30 1 0.5857 2.1036 1.3568 31 1 2.0972 1.5216 2.0950 32 1 6.0226 -0.1444 2.1139 33 1 8.0722 -0.1550 0.1708 34 1 8.1722 1.3700 1.0832 35 1 8.3004 0.0915 3.2045 36 1 8.2003 -1.4331 2.2914 37 1 10.2888 -0.8510 1.0888 38 1 10.3895 0.6738 2.0016 39 1 13.7939 -0.7142 2.2108 40 1 5.6956 2.5777 -2.3998 41 1 2.7092 2.0091 -3.1250 42 1 2.0762 3.0688 -1.8425 43 1 3.4837 3.5795 -2.8051 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:34 Heat of formation + Delta-G solvation = 47.164304 kcal Electronic energy + Delta-G solvation = -21048.225576 eV Core-core repulsion = 17935.352367 eV Total energy + Delta-G solvation = -3112.873209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13899 -38.15107 -36.24100 -33.99267 -33.13847 -32.61843 -30.93194 -30.52777 -27.45167 -26.63251 -25.71225 -24.04394 -23.06006 -21.97019 -21.02461 -20.41226 -18.04349 -17.68805 -16.29987 -16.00794 -15.64614 -15.14183 -14.87213 -14.52763 -14.38554 -14.18137 -14.06970 -13.92725 -13.20348 -13.08343 -12.60549 -12.32557 -12.25852 -12.12293 -12.01289 -11.85857 -11.79393 -11.25431 -10.98643 -10.91025 -10.68871 -10.60524 -10.54602 -10.03929 -9.62902 -9.49857 -9.16948 -9.13662 -8.90270 -8.36913 -7.76173 -6.01850 -4.04784 1.10875 1.28453 3.04753 3.32297 3.36775 3.39022 3.43158 3.90675 4.29959 4.44480 4.68670 4.86416 4.89507 4.95324 5.08761 5.10859 5.21623 5.25158 5.33162 5.33910 5.51376 5.61938 5.62851 5.69706 5.73399 5.80458 5.80761 5.91241 6.04420 6.18239 6.24124 6.50793 6.61840 6.66771 6.93354 6.98089 7.00497 7.28375 7.63290 7.66112 7.76303 7.97001 8.38281 8.48238 9.01533 9.59268 11.09452 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.031394 B = 0.002791 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.680368 B =10028.465262 C =10664.352848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 N -0.485 5.485 4 C 0.027 3.973 5 C 0.377 3.623 6 N -0.602 5.602 7 C 0.573 3.427 8 N -0.693 5.693 9 C 0.135 3.865 10 C -0.122 4.122 11 C 0.026 3.974 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.563 5.563 21 C 0.194 3.806 22 C -0.238 4.238 23 C -0.081 4.081 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.410 0.590 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.167 0.833 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.577 5.747 -7.558 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.070 4.070 3 N -0.209 5.209 4 C -0.120 4.120 5 C 0.138 3.862 6 N -0.328 5.328 7 C 0.215 3.785 8 N -0.328 5.328 9 C 0.012 3.988 10 C -0.160 4.160 11 C -0.011 4.011 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 N -0.286 5.286 21 C 0.026 3.974 22 C -0.248 4.248 23 C -0.139 4.139 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.247 0.753 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.184 0.816 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.763 5.556 -7.337 25.483 hybrid contribution 0.318 -0.718 1.166 1.406 sum -23.445 4.838 -6.171 24.721 Atomic orbital electron populations 1.21801 0.94193 1.01916 1.02575 1.22093 0.95975 0.87034 1.01928 1.60219 1.07240 1.17420 1.35985 1.22409 1.01680 0.98815 0.89062 1.19624 0.88814 0.88991 0.88769 1.67903 1.03607 1.26819 1.34512 1.19196 0.84494 0.87786 0.87027 1.44585 1.06015 1.57933 1.24259 1.21619 0.75840 1.01307 1.00077 1.21910 0.99567 0.98735 0.95797 1.19001 0.87191 0.97563 0.97368 1.21173 0.91559 1.35407 1.08001 0.92724 1.25022 0.97656 0.95692 0.96048 1.69953 1.06324 1.44926 1.32117 0.86640 0.78416 0.80253 0.82582 1.20246 1.21246 1.20242 1.68025 1.40354 1.15640 1.04585 1.22809 0.88984 0.90484 0.95169 1.20948 0.96022 1.07943 0.99859 1.20320 0.98269 0.98964 0.96358 0.92430 0.91712 0.91943 0.90909 0.93194 0.91455 0.90354 0.93823 0.75331 0.91810 0.91812 0.92768 0.92769 0.96245 0.96247 0.92867 0.81634 0.92022 0.90802 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.84 37.15 0.37 -0.64 16 2 C 0.06 0.54 5.46 -3.82 -0.02 0.51 16 3 N -0.49 -5.06 3.80 -180.89 -0.69 -5.74 16 4 C 0.03 0.25 9.10 60.07 0.55 0.80 16 5 C 0.38 4.88 5.26 -154.84 -0.81 4.07 16 6 N -0.60 -9.07 9.98 -13.17 -0.13 -9.20 16 7 C 0.57 9.40 8.43 -322.89 -2.72 6.68 16 8 N -0.69 -11.29 5.70 -62.33 -0.36 -11.65 16 9 C 0.13 2.43 5.65 -4.04 -0.02 2.41 16 10 C -0.12 -2.46 5.27 -26.73 -0.14 -2.60 16 11 C 0.03 0.68 4.97 -27.89 -0.14 0.54 16 12 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 13 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 16 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 N -0.56 -9.03 9.58 -14.02 -0.13 -9.16 16 21 C 0.19 2.44 10.99 -17.31 -0.19 2.25 16 22 C -0.24 -2.78 5.93 -104.14 -0.62 -3.40 16 23 C -0.08 -0.68 9.84 36.00 0.35 -0.32 16 24 H 0.06 0.36 6.59 -51.93 -0.34 0.02 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 28 H 0.05 0.54 8.11 -51.93 -0.42 0.12 16 29 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.08 0.55 6.54 -51.93 -0.34 0.21 16 31 H 0.04 0.46 8.03 -51.93 -0.42 0.04 16 32 H 0.41 6.14 8.59 -40.82 -0.35 5.79 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.62 7.53 -51.93 -0.39 0.23 16 43 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -31.46 355.53 -11.34 -42.80 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.29 Total: 0.39 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.81 Total: -3.26 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.57 Total: -61.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.46 -11.34 -42.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.963 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds