Wall clock time and date at job start Tue Mar 31 2020 00:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09002 * 109.46776 * 2 1 4 4 C 1.52993 * 109.46948 * 119.99448 * 2 1 3 5 5 C 1.53001 * 109.47588 * 297.29707 * 4 2 1 6 6 C 1.50704 * 109.46801 * 184.57033 * 5 4 2 7 7 H 1.08000 * 120.00295 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99518 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00072 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99945 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47053 * 89.99732 * 10 8 6 12 12 H 1.48497 * 109.47012 * 209.99708 * 10 8 6 13 13 H 1.48494 * 109.46877 * 329.99417 * 10 8 6 14 14 N 1.46894 * 109.47255 * 240.00207 * 2 1 3 15 15 C 1.46845 * 111.00127 * 62.27860 * 14 2 1 16 16 C 1.53043 * 109.52389 * 185.83842 * 15 14 2 17 17 C 1.53122 * 109.27846 * 300.82771 * 16 15 14 18 18 N 1.46497 * 109.52191 * 177.55580 * 17 16 15 19 19 C 1.35498 * 126.97592 * 119.99272 * 18 17 16 20 20 N 1.30530 * 107.30403 * 180.22527 * 19 18 17 21 21 N 1.28599 * 109.67078 * 359.62959 * 20 19 18 22 22 C 1.30518 * 109.67295 * 0.38060 * 21 20 19 23 23 C 1.53119 * 109.16344 * 57.64910 * 17 16 15 24 24 C 1.46843 * 111.00220 * 186.49412 * 14 2 1 25 25 H 1.08995 * 109.47066 * 300.00399 * 1 2 3 26 26 H 1.09003 * 109.46574 * 60.00192 * 1 2 3 27 27 H 1.08992 * 109.46648 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46953 * 57.29909 * 4 2 1 29 29 H 1.09005 * 109.47309 * 177.29038 * 4 2 1 30 30 H 1.08997 * 109.46895 * 304.56991 * 5 4 2 31 31 H 1.08997 * 109.46710 * 64.56836 * 5 4 2 32 32 H 0.97005 * 119.99690 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.46102 * 65.82754 * 15 14 2 34 34 H 1.08995 * 109.45653 * 305.85298 * 15 14 2 35 35 H 1.08991 * 109.50328 * 180.88261 * 16 15 14 36 36 H 1.09005 * 109.49798 * 60.76429 * 16 15 14 37 37 H 1.08999 * 109.52136 * 297.68107 * 17 16 15 38 38 H 1.07997 * 126.34993 * 359.96805 * 19 18 17 39 39 H 1.08001 * 126.34699 * 179.73311 * 22 21 20 40 40 H 1.08998 * 109.50037 * 62.28683 * 23 17 16 41 41 H 1.08996 * 109.49972 * 182.40329 * 23 17 16 42 42 H 1.09001 * 109.46186 * 294.17392 * 24 14 2 43 43 H 1.08999 * 109.46387 * 54.13481 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5864 0.0384 2.4976 6 6 2.1816 -0.6073 3.7223 7 1 2.8192 -1.4730 3.6206 8 6 1.9111 -0.0934 4.9728 9 7 1.1342 0.9605 5.0967 10 14 2.6482 -0.8941 6.4911 11 1 3.9618 -0.2700 6.7915 12 1 1.7336 -0.7024 7.6452 13 1 2.8351 -2.3462 6.2435 14 7 2.0198 -0.6924 -1.1994 15 6 1.5940 0.0042 -2.4200 16 6 1.9953 -0.8198 -3.6456 17 6 3.5143 -1.0133 -3.6493 18 7 3.8983 -1.8506 -4.7885 19 6 4.7275 -1.5126 -5.8054 20 7 4.7960 -2.5396 -6.6082 21 7 4.0684 -3.4961 -6.1505 22 6 3.4963 -3.1199 -5.0393 23 6 3.9370 -1.6971 -2.3462 24 6 3.4794 -0.8478 -1.1584 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3632 -1.0276 -0.0005 28 1 1.6376 -1.7339 1.2739 29 1 3.1290 -0.7634 1.2254 30 1 1.9203 1.0740 2.4341 31 1 0.4988 0.0108 2.5643 32 1 0.9443 1.3223 5.9765 33 1 2.0741 0.9817 -2.4665 34 1 0.5116 0.1315 -2.4065 35 1 1.6931 -0.2949 -4.5518 36 1 1.5046 -1.7923 -3.6067 37 1 4.0049 -0.0432 -3.7285 38 1 5.2343 -0.5672 -5.9309 39 1 2.8262 -3.7108 -4.4324 40 1 3.4769 -2.6835 -2.2870 41 1 5.0220 -1.7991 -2.3242 42 1 3.9507 0.1337 -1.2108 43 1 3.7664 -1.3390 -0.2286 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:32 Heat of formation + Delta-G solvation = 71.207473 kcal Electronic energy + Delta-G solvation = -21740.684310 eV Core-core repulsion = 18628.853691 eV Total energy + Delta-G solvation = -3111.830619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.31473 -39.58157 -36.49966 -34.05255 -32.60762 -31.41327 -30.78578 -30.44754 -28.48723 -25.63865 -24.80298 -23.19241 -22.69876 -22.36123 -21.48805 -19.93786 -19.33436 -17.94208 -16.63018 -16.12142 -15.84141 -15.31695 -15.06549 -14.82005 -14.54197 -14.39650 -14.14443 -13.93785 -13.71305 -12.88970 -12.51843 -12.42302 -11.99300 -11.83715 -11.57216 -11.53457 -11.48631 -11.22201 -11.14068 -10.93776 -10.78258 -10.59292 -10.53480 -10.41346 -10.04153 -9.67786 -9.60459 -9.38820 -9.08439 -8.39481 -8.26426 -6.05505 -4.07728 1.63923 2.22830 2.73407 3.27684 3.34523 3.37610 3.81811 4.02527 4.27816 4.31720 4.39112 4.41633 4.53822 4.81956 5.01305 5.05158 5.09127 5.20952 5.25590 5.30518 5.31920 5.42109 5.51646 5.58504 5.68780 5.72074 5.81874 5.85628 5.90184 5.97302 6.20228 6.27674 6.52435 6.60043 6.64396 6.65052 6.99418 7.19408 7.25994 7.61499 7.76157 7.94224 8.37307 8.53462 8.99390 9.56680 11.05743 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.033763 B = 0.003102 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.104862 B = 9025.548542 C = 9540.339784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.037 0.963 4 C -0.105 4.105 5 C 0.023 3.977 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.535 5.535 15 C 0.054 3.946 16 C -0.122 4.122 17 C 0.134 3.866 18 N -0.467 5.467 19 C 0.147 3.853 20 N -0.303 5.303 21 N -0.304 5.304 22 C 0.158 3.842 23 C -0.123 4.123 24 C 0.053 3.947 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.012 0.988 31 H 0.020 0.980 32 H 0.260 0.740 33 H 0.034 0.966 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.215 0.785 39 H 0.215 0.785 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -0.924 -17.481 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 H 0.055 0.945 4 C -0.143 4.143 5 C -0.014 4.014 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 N -0.261 5.261 15 C -0.074 4.074 16 C -0.161 4.161 17 C 0.031 3.969 18 N -0.157 5.157 19 C -0.141 4.141 20 N -0.143 5.143 21 N -0.143 5.143 22 C -0.130 4.130 23 C -0.161 4.161 24 C -0.076 4.076 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.231 0.769 39 H 0.232 0.768 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.716 -2.129 -18.534 18.853 hybrid contribution 0.382 1.389 2.096 2.544 sum 3.098 -0.740 -16.438 16.743 Atomic orbital electron populations 1.21889 0.94452 1.02267 1.01328 1.21791 0.95744 0.95532 0.89391 0.94485 1.21803 0.99369 0.99644 0.93487 1.19122 0.96841 0.95052 0.90423 1.21245 1.29734 1.13545 0.91361 0.92763 1.25014 0.95226 0.95046 0.99124 1.69958 1.37055 1.22928 1.23561 0.86617 0.78990 0.79837 0.82713 1.20708 1.21208 1.19845 1.62045 1.10707 1.51243 1.02056 1.22074 1.01771 0.94548 0.89050 1.21980 0.92657 1.02692 0.98747 1.21780 0.97465 0.93880 0.83809 1.46743 1.34980 1.13397 1.20603 1.26513 0.97715 1.02498 0.87387 1.74241 1.17928 0.97880 1.24233 1.74263 1.09443 1.22080 1.08544 1.26438 1.03177 0.85201 0.98228 1.22001 1.01376 1.00661 0.92100 1.22132 0.88258 0.98547 0.98647 0.90964 0.93908 0.92141 0.92525 0.93177 0.96953 0.96130 0.92999 0.94806 0.89369 0.90885 0.89960 0.87907 0.76897 0.76848 0.89940 0.90727 0.94685 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.75 37.16 0.33 -1.74 16 2 C 0.08 1.25 2.17 -67.71 -0.15 1.10 16 3 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -1.98 4.31 -26.73 -0.12 -2.09 16 5 C 0.02 0.56 4.56 -27.88 -0.13 0.43 16 6 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 10 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 14 N -0.54 -6.40 4.52 -226.70 -1.03 -7.43 16 15 C 0.05 0.51 5.26 -3.83 -0.02 0.49 16 16 C -0.12 -0.92 5.47 -26.65 -0.15 -1.07 16 17 C 0.13 0.97 2.95 -67.81 -0.20 0.77 16 18 N -0.47 -4.01 2.61 -112.71 -0.29 -4.31 16 19 C 0.15 1.36 12.71 -89.93 -1.14 0.22 16 20 N -0.30 -3.97 12.21 29.69 0.36 -3.61 16 21 N -0.30 -4.06 12.21 29.69 0.36 -3.69 16 22 C 0.16 1.56 11.72 -89.95 -1.05 0.51 16 23 C -0.12 -1.03 5.46 -26.65 -0.15 -1.18 16 24 C 0.05 0.57 5.08 -3.84 -0.02 0.55 16 25 H 0.07 1.19 6.60 -51.93 -0.34 0.85 16 26 H 0.04 0.52 6.33 -51.93 -0.33 0.19 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 29 H 0.05 0.92 6.04 -51.93 -0.31 0.61 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.52 6.74 -51.93 -0.35 0.17 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.84 6.08 -51.93 -0.32 0.52 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 37 H 0.10 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.21 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.22 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 1.23 5.80 -51.93 -0.30 0.93 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -31.85 337.50 -9.96 -41.81 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -6.96 Total: -3.48 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.20 Total: -15.04 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.14 Total: -44.52 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.85 -9.96 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.016 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds