Wall clock time and date at job start Tue Mar 31 2020 00:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09002 * 109.46776 * 2 1 4 4 C 1.52993 * 109.46948 * 119.99448 * 2 1 3 5 5 C 1.53001 * 109.47588 * 297.29707 * 4 2 1 6 6 C 1.50704 * 109.46801 * 184.57033 * 5 4 2 7 7 H 1.08000 * 120.00295 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99518 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00072 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99945 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47053 * 89.99732 * 10 8 6 12 12 H 1.48497 * 109.47012 * 209.99708 * 10 8 6 13 13 H 1.48494 * 109.46877 * 329.99417 * 10 8 6 14 14 N 1.46894 * 109.47255 * 240.00207 * 2 1 3 15 15 C 1.46845 * 111.00127 * 62.27860 * 14 2 1 16 16 C 1.53043 * 109.52389 * 185.83842 * 15 14 2 17 17 C 1.53122 * 109.27846 * 300.82771 * 16 15 14 18 18 N 1.46497 * 109.52191 * 177.55580 * 17 16 15 19 19 C 1.35498 * 126.97592 * 119.99272 * 18 17 16 20 20 N 1.30530 * 107.30403 * 180.22527 * 19 18 17 21 21 N 1.28599 * 109.67078 * 359.62959 * 20 19 18 22 22 C 1.30518 * 109.67295 * 0.38060 * 21 20 19 23 23 C 1.53119 * 109.16344 * 57.64910 * 17 16 15 24 24 C 1.46843 * 111.00220 * 186.49412 * 14 2 1 25 25 H 1.08995 * 109.47066 * 300.00399 * 1 2 3 26 26 H 1.09003 * 109.46574 * 60.00192 * 1 2 3 27 27 H 1.08992 * 109.46648 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46953 * 57.29909 * 4 2 1 29 29 H 1.09005 * 109.47309 * 177.29038 * 4 2 1 30 30 H 1.08997 * 109.46895 * 304.56991 * 5 4 2 31 31 H 1.08997 * 109.46710 * 64.56836 * 5 4 2 32 32 H 0.97005 * 119.99690 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.46102 * 65.82754 * 15 14 2 34 34 H 1.08995 * 109.45653 * 305.85298 * 15 14 2 35 35 H 1.08991 * 109.50328 * 180.88261 * 16 15 14 36 36 H 1.09005 * 109.49798 * 60.76429 * 16 15 14 37 37 H 1.08999 * 109.52136 * 297.68107 * 17 16 15 38 38 H 1.07997 * 126.34993 * 359.96805 * 19 18 17 39 39 H 1.08001 * 126.34699 * 179.73311 * 22 21 20 40 40 H 1.08998 * 109.50037 * 62.28683 * 23 17 16 41 41 H 1.08996 * 109.49972 * 182.40329 * 23 17 16 42 42 H 1.09001 * 109.46186 * 294.17392 * 24 14 2 43 43 H 1.08999 * 109.46387 * 54.13481 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5864 0.0384 2.4976 6 6 2.1816 -0.6073 3.7223 7 1 2.8192 -1.4730 3.6206 8 6 1.9111 -0.0934 4.9728 9 7 1.1342 0.9605 5.0967 10 14 2.6482 -0.8941 6.4911 11 1 3.9618 -0.2700 6.7915 12 1 1.7336 -0.7024 7.6452 13 1 2.8351 -2.3462 6.2435 14 7 2.0198 -0.6924 -1.1994 15 6 1.5940 0.0042 -2.4200 16 6 1.9953 -0.8198 -3.6456 17 6 3.5143 -1.0133 -3.6493 18 7 3.8983 -1.8506 -4.7885 19 6 4.7275 -1.5126 -5.8054 20 7 4.7960 -2.5396 -6.6082 21 7 4.0684 -3.4961 -6.1505 22 6 3.4963 -3.1199 -5.0393 23 6 3.9370 -1.6971 -2.3462 24 6 3.4794 -0.8478 -1.1584 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3632 -1.0276 -0.0005 28 1 1.6376 -1.7339 1.2739 29 1 3.1290 -0.7634 1.2254 30 1 1.9203 1.0740 2.4341 31 1 0.4988 0.0108 2.5643 32 1 0.9443 1.3223 5.9765 33 1 2.0741 0.9817 -2.4665 34 1 0.5116 0.1315 -2.4065 35 1 1.6931 -0.2949 -4.5518 36 1 1.5046 -1.7923 -3.6067 37 1 4.0049 -0.0432 -3.7285 38 1 5.2343 -0.5672 -5.9309 39 1 2.8262 -3.7108 -4.4324 40 1 3.4769 -2.6835 -2.2870 41 1 5.0220 -1.7991 -2.3242 42 1 3.9507 0.1337 -1.2108 43 1 3.7664 -1.3390 -0.2286 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:31 Heat of formation + Delta-G solvation = 53.858242 kcal Electronic energy + Delta-G solvation = -21741.436629 eV Core-core repulsion = 18628.853691 eV Total energy + Delta-G solvation = -3112.582938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.05894 -40.47566 -37.53605 -35.54665 -34.13945 -32.27688 -31.73512 -31.47432 -29.80578 -27.20435 -25.79116 -24.26860 -23.55153 -23.22655 -22.74168 -20.84744 -20.53922 -18.71393 -18.45018 -17.02007 -16.87950 -16.43336 -16.09961 -15.89842 -15.72956 -15.47885 -15.02993 -14.78233 -14.61029 -14.22727 -14.06236 -13.76166 -13.28625 -12.99004 -12.88867 -12.64497 -12.51070 -12.45139 -12.32757 -12.25166 -12.05130 -11.82605 -11.60718 -11.43870 -11.29538 -11.24083 -11.03045 -10.75065 -10.51556 -10.40207 -9.23489 -8.19409 -6.29440 0.95350 1.40023 1.40729 1.51742 1.56667 1.94812 2.40814 2.88124 3.14194 3.40519 3.62200 3.72202 3.74504 3.95616 4.01840 4.10892 4.22731 4.31032 4.36356 4.41481 4.48286 4.53955 4.63807 4.76146 4.77333 4.84425 4.94450 4.94640 5.00777 5.05176 5.05608 5.16249 5.19024 5.27222 5.32086 5.44577 5.54122 5.80889 5.88651 6.00433 6.12533 6.23385 6.30903 6.88482 7.39700 7.77010 8.92094 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.033763 B = 0.003102 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.104862 B = 9025.548542 C = 9540.339784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.092 3.908 3 H 0.028 0.972 4 C -0.091 4.091 5 C 0.029 3.971 6 C -0.541 4.541 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.264 1.264 14 N -0.537 5.537 15 C 0.054 3.946 16 C -0.113 4.113 17 C 0.141 3.859 18 N -0.463 5.463 19 C 0.161 3.839 20 N -0.351 5.351 21 N -0.350 5.350 22 C 0.163 3.837 23 C -0.114 4.114 24 C 0.052 3.948 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.053 0.947 30 H -0.013 1.013 31 H -0.001 1.001 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.252 0.748 39 H 0.238 0.762 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.297 -0.980 -18.286 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.016 4.016 3 H 0.046 0.954 4 C -0.129 4.129 5 C -0.009 4.009 6 C -0.580 4.580 7 H 0.076 0.924 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.188 1.188 14 N -0.262 5.262 15 C -0.074 4.074 16 C -0.152 4.152 17 C 0.038 3.962 18 N -0.152 5.152 19 C -0.128 4.128 20 N -0.190 5.190 21 N -0.188 5.188 22 C -0.126 4.126 23 C -0.152 4.152 24 C -0.076 4.076 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.005 0.995 31 H 0.017 0.983 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.142 0.858 38 H 0.268 0.732 39 H 0.254 0.746 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.412 -2.199 -19.365 19.786 hybrid contribution 0.155 1.446 2.354 2.767 sum 3.567 -0.753 -17.011 17.398 Atomic orbital electron populations 1.21809 0.94064 1.02179 1.01358 1.21489 0.95997 0.94669 0.89407 0.95365 1.21553 0.99501 0.98776 0.93049 1.18995 0.95278 0.94148 0.92446 1.21725 1.29755 1.13737 0.92739 0.92446 1.25921 0.95632 0.95586 1.02546 1.70086 1.38410 1.24382 1.24410 0.85529 0.78268 0.79213 0.78557 1.19855 1.20872 1.18829 1.61984 1.11488 1.51074 1.01698 1.22144 1.01970 0.95017 0.88296 1.21897 0.92699 1.02404 0.98185 1.21794 0.97484 0.94277 0.82606 1.46775 1.34697 1.13044 1.20691 1.27199 0.96565 1.02756 0.86300 1.74156 1.19502 0.99141 1.26180 1.74177 1.10981 1.23285 1.10376 1.26856 1.02541 0.85779 0.97442 1.21880 1.01685 1.00017 0.91626 1.22112 0.87550 0.99030 0.98947 0.93773 0.91022 0.92252 0.93054 0.92849 0.99495 0.98268 0.92857 0.94061 0.89215 0.89445 0.90184 0.85783 0.73236 0.74633 0.90273 0.90054 0.94245 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 8.75 71.99 0.63 -3.28 16 2 C 0.09 2.74 2.17 44.92 0.10 2.84 16 3 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.09 -3.46 4.31 30.59 0.13 -3.33 16 5 C 0.03 1.45 4.56 29.85 0.14 1.58 16 6 C -0.54 -30.05 9.11 25.60 0.23 -29.81 16 7 H 0.06 3.07 7.74 -2.91 -0.02 3.04 16 8 C 0.00 0.05 5.46 84.65 0.46 0.51 16 9 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 10 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 14 N -0.54 -11.86 4.52 -871.15 -3.94 -15.80 16 15 C 0.05 0.86 5.26 86.33 0.45 1.31 16 16 C -0.11 -1.32 5.47 30.65 0.17 -1.15 16 17 C 0.14 1.54 2.95 45.07 0.13 1.68 16 18 N -0.46 -6.56 2.61 -510.50 -1.33 -7.89 16 19 C 0.16 2.54 12.71 180.11 2.29 4.83 16 20 N -0.35 -8.80 12.21 -59.98 -0.73 -9.53 16 21 N -0.35 -9.04 12.21 -59.99 -0.73 -9.77 16 22 C 0.16 2.91 11.72 180.11 2.11 5.02 16 23 C -0.11 -1.61 5.46 30.64 0.17 -1.44 16 24 C 0.05 1.03 5.08 86.32 0.44 1.47 16 25 H 0.04 1.50 6.60 -2.39 -0.02 1.48 16 26 H 0.07 1.61 6.33 -2.39 -0.02 1.60 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 28 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.05 1.98 6.04 -2.38 -0.01 1.96 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H 0.00 -0.05 6.74 -2.39 -0.02 -0.07 16 32 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 33 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 1.43 6.08 -2.39 -0.01 1.42 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.02 7.91 -2.38 -0.02 1.00 16 37 H 0.12 0.94 8.09 -2.39 -0.02 0.92 16 38 H 0.25 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.24 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.08 1.21 7.91 -2.39 -0.02 1.19 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 1.87 5.80 -2.39 -0.01 1.86 16 Total: -1.00 -70.79 337.50 4.00 -66.79 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 0.98 Total: 5.87 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 7.45 Total: -19.77 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -6.45 Total: -98.41 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -70.79 4.00 -66.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.645 kcal (2) G-P(sol) polarization free energy of solvation -70.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds