Wall clock time and date at job start Tue Mar 31 2020 00:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99711 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00219 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46794 * 90.00022 * 10 8 6 12 12 H 1.48502 * 109.47140 * 210.00005 * 10 8 6 13 13 H 1.48501 * 109.46982 * 330.00118 * 10 8 6 14 14 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 15 15 C 1.46848 * 110.99749 * 59.21475 * 14 2 1 16 16 C 1.53032 * 109.52705 * 174.15788 * 15 14 2 17 17 C 1.53123 * 109.27821 * 59.17546 * 16 15 14 18 18 C 1.53119 * 109.16225 * 302.35157 * 17 16 15 19 19 H 1.08998 * 109.50241 * 297.71272 * 18 17 16 20 20 N 1.46498 * 109.53695 * 177.61167 * 18 17 16 21 21 C 1.34432 * 126.82050 * 324.89063 * 20 18 17 22 22 N 1.30835 * 108.07390 * 179.89460 * 21 20 18 23 23 C 1.33243 * 109.82883 * 0.37506 * 22 21 20 24 24 N 1.30710 * 108.94713 * 359.76617 * 23 22 21 25 25 C 1.46845 * 111.00367 * 295.00323 * 14 2 1 26 26 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 27 27 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 28 28 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 30 30 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 31 31 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 33 33 H 0.97000 * 119.99684 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.46489 * 294.17919 * 15 14 2 35 35 H 1.09012 * 109.46334 * 54.14193 * 15 14 2 36 36 H 1.09008 * 109.50427 * 299.23997 * 16 15 14 37 37 H 1.08993 * 109.54090 * 179.14189 * 16 15 14 38 38 H 1.08998 * 109.52464 * 182.44360 * 17 16 15 39 39 H 1.09000 * 109.51479 * 62.25400 * 17 16 15 40 40 H 1.07995 * 125.96371 * 0.02828 * 21 20 18 41 41 H 1.07996 * 125.52418 * 179.73187 * 23 22 21 42 42 H 1.08999 * 109.46430 * 305.85365 * 25 14 2 43 43 H 1.09003 * 109.45960 * 65.82506 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0671 -1.3231 -2.5444 7 1 3.3687 -1.8036 -3.2135 8 6 5.4184 -1.3591 -2.8162 9 7 5.8568 -1.9790 -3.8900 10 14 6.6264 -0.5274 -1.6593 11 1 7.0622 -1.4945 -0.6200 12 1 7.8080 -0.0616 -2.4287 13 1 5.9692 0.6349 -1.0094 14 7 2.0196 -0.6924 1.1995 15 6 1.5335 -2.0774 1.2430 16 6 2.1777 -2.8089 2.4228 17 6 1.8222 -2.0824 3.7230 18 6 2.2964 -0.6293 3.6326 19 1 3.3809 -0.6064 3.5254 20 7 1.9100 0.0888 4.8497 21 6 0.7889 -0.0910 5.5695 22 7 0.8181 0.7392 6.5803 23 6 1.9330 1.4675 6.5349 24 7 2.6341 1.1058 5.4928 25 6 1.6488 0.0390 2.4177 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2055 31 1 3.8532 0.4371 -1.3573 32 1 3.9994 -1.0726 -0.4259 33 1 6.8074 -2.0040 -4.0815 34 1 0.4501 -2.0785 1.3627 35 1 1.7965 -2.5840 0.3142 36 1 3.2603 -2.8203 2.2966 37 1 1.8054 -3.8324 2.4643 38 1 2.3145 -2.5747 4.5616 39 1 0.7423 -2.1047 3.8691 40 1 0.0026 -0.7988 5.3527 41 1 2.2117 2.2330 7.2439 42 1 1.9955 1.0696 2.3423 43 1 0.5648 0.0280 2.5320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172501300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:45 Heat of formation + Delta-G solvation = 86.300888 kcal Electronic energy + Delta-G solvation = -22325.887595 eV Core-core repulsion = 19214.711475 eV Total energy + Delta-G solvation = -3111.176120 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.27989 -39.62337 -36.11399 -33.44119 -32.79211 -31.40078 -31.21058 -29.52577 -29.08801 -25.60355 -24.69647 -23.77038 -22.44162 -21.89686 -20.96646 -20.05165 -19.04060 -17.48360 -16.59614 -16.02616 -15.95098 -15.31229 -14.84787 -14.62576 -14.43929 -14.23072 -14.14855 -13.76219 -13.16855 -12.81843 -12.72453 -12.47601 -12.28613 -12.26148 -11.88545 -11.77606 -11.46480 -11.04672 -10.95572 -10.82516 -10.72388 -10.44148 -10.15622 -9.96164 -9.95278 -9.78502 -9.63434 -9.49909 -9.07286 -8.48176 -8.13002 -5.99357 -3.96204 1.46685 2.06609 2.79812 3.36270 3.43493 3.50040 3.93720 4.10623 4.15269 4.46228 4.51459 4.63715 4.71300 4.87896 4.99429 5.05416 5.16447 5.23828 5.31480 5.36352 5.38311 5.49851 5.50217 5.57941 5.69372 5.72789 5.89896 6.03968 6.09887 6.10007 6.12815 6.23336 6.26861 6.42148 6.59699 6.64314 6.97120 7.19894 7.22424 7.45831 7.60752 7.87954 7.91277 8.59452 9.06157 9.64729 11.14326 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.004434 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.311489 B = 6312.956817 C = 6817.914784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 H 0.079 0.921 4 C -0.095 4.095 5 C -0.007 4.007 6 C -0.519 4.519 7 H 0.068 0.932 8 C 0.065 3.935 9 N -0.908 5.908 10 Si 0.880 3.120 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.265 1.265 14 N -0.518 5.518 15 C 0.043 3.957 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.158 3.842 19 H 0.116 0.884 20 N -0.367 5.367 21 C 0.252 3.748 22 N -0.551 5.551 23 C 0.191 3.809 24 N -0.316 5.316 25 C 0.050 3.950 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.010 0.990 32 H 0.025 0.975 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.214 0.786 41 H 0.215 0.785 42 H 0.080 0.920 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.932 1.565 17.746 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.027 4.027 3 H 0.098 0.902 4 C -0.133 4.133 5 C -0.044 4.044 6 C -0.557 4.557 7 H 0.086 0.914 8 C -0.135 4.135 9 N -0.548 5.548 10 Si 0.708 3.292 11 H -0.204 1.204 12 H -0.217 1.217 13 H -0.189 1.189 14 N -0.242 5.242 15 C -0.084 4.084 16 C -0.151 4.151 17 C -0.165 4.165 18 C 0.055 3.945 19 H 0.134 0.866 20 N -0.157 5.157 21 C -0.045 4.045 22 N -0.279 5.279 23 C -0.112 4.112 24 N -0.143 5.143 25 C -0.080 4.080 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.028 0.972 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.230 0.770 41 H 0.232 0.768 42 H 0.099 0.901 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.776 1.823 17.609 20.725 hybrid contribution -0.260 0.327 0.436 0.604 sum -11.036 2.150 18.045 21.261 Atomic orbital electron populations 1.22491 0.98352 1.01910 1.01634 1.21919 0.91586 0.98677 0.90491 0.90240 1.21595 0.99303 0.98987 0.93405 1.19481 0.91106 0.96538 0.97272 1.21227 0.92818 1.34115 1.07551 0.91395 1.25016 0.98457 0.94963 0.95064 1.69926 1.14498 1.43847 1.26481 0.86765 0.80633 0.80705 0.81083 1.20379 1.21744 1.18917 1.62004 1.59691 1.01814 1.00698 1.22287 0.96619 0.89395 1.00115 1.21562 1.02921 0.98460 0.92172 1.21992 1.01503 0.92892 1.00161 1.21506 1.02882 0.90336 0.79774 0.86596 1.50714 1.15438 1.27859 1.21717 1.25913 0.91414 0.98432 0.88781 1.70553 1.23354 1.10565 1.23380 1.26003 0.89413 0.99694 0.96057 1.78118 1.20270 1.05248 1.10644 1.22348 0.97569 0.98570 0.89477 0.93487 0.91886 0.92385 0.92392 0.92502 0.97196 0.95660 0.92904 0.94752 0.88520 0.90061 0.90378 0.90728 0.91312 0.77013 0.76828 0.90142 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 8.50 37.15 0.32 -1.91 16 2 C 0.08 1.20 2.35 -67.71 -0.16 1.04 16 3 H 0.08 1.23 8.08 -51.92 -0.42 0.81 16 4 C -0.10 -1.75 4.44 -26.73 -0.12 -1.87 16 5 C -0.01 -0.15 3.93 -27.88 -0.11 -0.26 16 6 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 7 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 8 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -28.13 13.96 55.43 0.77 -27.36 16 10 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 14 N -0.52 -7.11 4.10 -226.69 -0.93 -8.03 16 15 C 0.04 0.52 4.64 -3.84 -0.02 0.50 16 16 C -0.11 -1.12 6.09 -26.65 -0.16 -1.28 16 17 C -0.13 -1.08 5.00 -26.61 -0.13 -1.22 16 18 C 0.16 1.72 3.40 -67.85 -0.23 1.49 16 19 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 20 N -0.37 -4.19 3.55 -56.03 -0.20 -4.39 16 21 C 0.25 2.52 11.78 -90.65 -1.07 1.46 16 22 N -0.55 -6.49 11.19 -15.83 -0.18 -6.67 16 23 C 0.19 2.16 13.03 -91.81 -1.20 0.97 16 24 N -0.32 -4.16 12.70 29.29 0.37 -3.79 16 25 C 0.05 0.59 4.63 -3.84 -0.02 0.57 16 26 H 0.05 0.52 6.65 -51.93 -0.35 0.17 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.67 6.52 -51.92 -0.34 0.33 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.03 6.05 -51.93 -0.31 0.72 16 31 H 0.01 0.24 7.20 -51.93 -0.37 -0.14 16 32 H 0.03 0.59 7.18 -51.93 -0.37 0.22 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.03 0.37 6.62 -51.93 -0.34 0.02 16 35 H 0.10 1.35 5.93 -51.92 -0.31 1.04 16 36 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.47 7.12 -51.93 -0.37 0.10 16 40 H 0.21 1.31 7.27 -52.49 -0.38 0.93 16 41 H 0.22 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 43 H 0.04 0.41 6.73 -51.93 -0.35 0.06 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -32.89 333.27 -10.01 -42.90 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.88 Total: -1.47 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -3.33 Total: -13.67 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.16 Total: -50.24 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.89 -10.01 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.204 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds