Wall clock time and date at job start Tue Mar 31 2020 00:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99711 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00219 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46794 * 90.00022 * 10 8 6 12 12 H 1.48502 * 109.47140 * 210.00005 * 10 8 6 13 13 H 1.48501 * 109.46982 * 330.00118 * 10 8 6 14 14 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 15 15 C 1.46848 * 110.99749 * 59.21475 * 14 2 1 16 16 C 1.53032 * 109.52705 * 174.15788 * 15 14 2 17 17 C 1.53123 * 109.27821 * 59.17546 * 16 15 14 18 18 C 1.53119 * 109.16225 * 302.35157 * 17 16 15 19 19 H 1.08998 * 109.50241 * 297.71272 * 18 17 16 20 20 N 1.46498 * 109.53695 * 177.61167 * 18 17 16 21 21 C 1.34432 * 126.82050 * 324.89063 * 20 18 17 22 22 N 1.30835 * 108.07390 * 179.89460 * 21 20 18 23 23 C 1.33243 * 109.82883 * 0.37506 * 22 21 20 24 24 N 1.30710 * 108.94713 * 359.76617 * 23 22 21 25 25 C 1.46845 * 111.00367 * 295.00323 * 14 2 1 26 26 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 27 27 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 28 28 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 30 30 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 31 31 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 33 33 H 0.97000 * 119.99684 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.46489 * 294.17919 * 15 14 2 35 35 H 1.09012 * 109.46334 * 54.14193 * 15 14 2 36 36 H 1.09008 * 109.50427 * 299.23997 * 16 15 14 37 37 H 1.08993 * 109.54090 * 179.14189 * 16 15 14 38 38 H 1.08998 * 109.52464 * 182.44360 * 17 16 15 39 39 H 1.09000 * 109.51479 * 62.25400 * 17 16 15 40 40 H 1.07995 * 125.96371 * 0.02828 * 21 20 18 41 41 H 1.07996 * 125.52418 * 179.73187 * 23 22 21 42 42 H 1.08999 * 109.46430 * 305.85365 * 25 14 2 43 43 H 1.09003 * 109.45960 * 65.82506 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0671 -1.3231 -2.5444 7 1 3.3687 -1.8036 -3.2135 8 6 5.4184 -1.3591 -2.8162 9 7 5.8568 -1.9790 -3.8900 10 14 6.6264 -0.5274 -1.6593 11 1 7.0622 -1.4945 -0.6200 12 1 7.8080 -0.0616 -2.4287 13 1 5.9692 0.6349 -1.0094 14 7 2.0196 -0.6924 1.1995 15 6 1.5335 -2.0774 1.2430 16 6 2.1777 -2.8089 2.4228 17 6 1.8222 -2.0824 3.7230 18 6 2.2964 -0.6293 3.6326 19 1 3.3809 -0.6064 3.5254 20 7 1.9100 0.0888 4.8497 21 6 0.7889 -0.0910 5.5695 22 7 0.8181 0.7392 6.5803 23 6 1.9330 1.4675 6.5349 24 7 2.6341 1.1058 5.4928 25 6 1.6488 0.0390 2.4177 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2055 31 1 3.8532 0.4371 -1.3573 32 1 3.9994 -1.0726 -0.4259 33 1 6.8074 -2.0040 -4.0815 34 1 0.4501 -2.0785 1.3627 35 1 1.7965 -2.5840 0.3142 36 1 3.2603 -2.8203 2.2966 37 1 1.8054 -3.8324 2.4643 38 1 2.3145 -2.5747 4.5616 39 1 0.7423 -2.1047 3.8691 40 1 0.0026 -0.7988 5.3527 41 1 2.2117 2.2330 7.2439 42 1 1.9955 1.0696 2.3423 43 1 0.5648 0.0280 2.5320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172501300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:45 Heat of formation + Delta-G solvation = 66.721056 kcal Electronic energy + Delta-G solvation = -22326.736640 eV Core-core repulsion = 19214.711475 eV Total energy + Delta-G solvation = -3112.025165 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.08777 -40.60932 -37.20473 -35.16832 -33.97363 -32.77919 -32.20160 -30.77423 -30.02358 -27.22938 -25.63196 -24.77644 -23.32264 -22.73586 -22.62739 -21.13987 -20.08133 -18.85964 -18.23790 -17.06037 -16.83834 -16.33564 -16.14401 -15.78779 -15.51016 -15.22385 -15.10456 -14.87884 -14.67730 -14.19168 -13.98796 -13.70814 -13.46501 -13.33994 -13.06870 -12.88948 -12.79945 -12.66369 -11.93212 -11.87450 -11.78774 -11.77320 -11.59624 -11.41859 -11.25951 -11.09432 -10.96472 -10.81682 -10.72369 -10.60424 -9.14139 -8.27022 -6.28442 0.68218 1.27001 1.35592 1.36994 1.49993 2.00218 2.37634 2.95550 3.09914 3.36645 3.47402 3.63225 3.85986 3.92728 3.99013 4.09470 4.15218 4.23752 4.29864 4.37455 4.50206 4.57207 4.62368 4.69996 4.74819 4.83754 4.88752 4.94902 5.01306 5.04880 5.16710 5.24863 5.27244 5.32652 5.43409 5.48300 5.60656 5.69311 5.74006 5.88462 6.17029 6.23350 6.34096 6.80506 7.11350 7.36253 8.89986 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.004434 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.311489 B = 6312.956817 C = 6817.914784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.088 3.912 3 H 0.069 0.931 4 C -0.088 4.088 5 C 0.002 3.998 6 C -0.526 4.526 7 H 0.032 0.968 8 C 0.006 3.994 9 N -0.954 5.954 10 Si 0.947 3.053 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.254 1.254 14 N -0.540 5.540 15 C 0.043 3.957 16 C -0.109 4.109 17 C -0.116 4.116 18 C 0.163 3.837 19 H 0.090 0.910 20 N -0.373 5.373 21 C 0.261 3.739 22 N -0.574 5.574 23 C 0.192 3.808 24 N -0.358 5.358 25 C 0.059 3.941 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.003 0.997 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.253 0.747 41 H 0.240 0.760 42 H 0.060 0.940 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.523 1.661 20.286 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.126 4.126 5 C -0.036 4.036 6 C -0.564 4.564 7 H 0.050 0.950 8 C -0.190 4.190 9 N -0.595 5.595 10 Si 0.772 3.228 11 H -0.193 1.193 12 H -0.213 1.213 13 H -0.177 1.177 14 N -0.264 5.264 15 C -0.084 4.084 16 C -0.147 4.147 17 C -0.154 4.154 18 C 0.060 3.940 19 H 0.108 0.892 20 N -0.163 5.163 21 C -0.035 4.035 22 N -0.302 5.302 23 C -0.110 4.110 24 N -0.186 5.186 25 C -0.070 4.070 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.021 0.979 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.268 0.732 41 H 0.256 0.744 42 H 0.079 0.921 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.382 1.919 20.158 23.735 hybrid contribution 0.193 0.261 -0.412 0.525 sum -12.188 2.180 19.746 23.307 Atomic orbital electron populations 1.22365 0.95700 1.02735 1.02546 1.21670 0.93590 0.97432 0.89291 0.91280 1.21446 0.95909 0.99733 0.95487 1.19361 0.94503 0.95050 0.94659 1.21619 0.92460 1.33708 1.08593 0.94971 1.25920 1.00612 0.95763 0.96707 1.70069 1.15110 1.45747 1.28607 0.85701 0.78089 0.80040 0.79011 1.19296 1.21312 1.17749 1.61904 1.60770 1.02793 1.00973 1.22295 0.98078 0.88209 0.99809 1.21535 1.01414 0.99647 0.92139 1.21948 1.03322 0.90689 0.99448 1.21407 1.01451 0.91707 0.79439 0.89153 1.50684 1.15913 1.27850 1.21893 1.26693 0.91286 0.97988 0.87577 1.70596 1.23738 1.11465 1.24410 1.26573 0.88972 0.99686 0.95817 1.78075 1.21906 1.06721 1.11882 1.22234 0.98556 0.97288 0.88910 0.91800 0.91760 0.91547 0.93093 0.92411 0.97858 0.95653 0.92705 0.92488 0.91115 0.92367 0.88135 0.89852 0.88377 0.73162 0.74358 0.92148 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.74 8.50 71.98 0.61 -3.13 16 2 C 0.09 2.50 2.35 44.91 0.11 2.61 16 3 H 0.07 2.09 8.08 -2.38 -0.02 2.07 16 4 C -0.09 -3.24 4.44 30.59 0.14 -3.11 16 5 C 0.00 0.08 3.93 29.85 0.12 0.20 16 6 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 7 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 8 C 0.01 0.37 5.47 84.66 0.46 0.83 16 9 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 10 Si 0.95 46.07 27.47 68.60 1.88 47.96 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 H -0.25 -11.78 6.54 99.48 0.65 -11.13 16 14 N -0.54 -14.03 4.10 -871.11 -3.57 -17.60 16 15 C 0.04 0.94 4.64 86.32 0.40 1.35 16 16 C -0.11 -1.91 6.09 30.65 0.19 -1.72 16 17 C -0.12 -1.58 5.00 30.67 0.15 -1.43 16 18 C 0.16 3.23 3.40 45.04 0.15 3.38 16 19 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 20 N -0.37 -7.73 3.55 -331.20 -1.18 -8.90 16 21 C 0.26 4.36 11.78 180.36 2.12 6.48 16 22 N -0.57 -12.10 11.19 -204.00 -2.28 -14.38 16 23 C 0.19 4.03 13.03 180.77 2.36 6.38 16 24 N -0.36 -9.04 12.70 -61.25 -0.78 -9.82 16 25 C 0.06 1.28 4.63 86.33 0.40 1.68 16 26 H 0.06 1.17 6.65 -2.39 -0.02 1.16 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.32 6.52 -2.38 -0.02 1.30 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 2.11 6.05 -2.39 -0.01 2.09 16 31 H 0.00 0.15 7.20 -2.39 -0.02 0.13 16 32 H 0.03 1.18 7.18 -2.39 -0.02 1.17 16 33 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.06 0.99 6.62 -2.39 -0.02 0.98 16 35 H 0.07 1.92 5.93 -2.38 -0.01 1.91 16 36 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 0.81 7.12 -2.39 -0.02 0.80 16 40 H 0.25 1.80 7.27 -2.91 -0.02 1.78 16 41 H 0.24 3.23 8.06 -2.91 -0.02 3.20 16 42 H 0.06 1.54 8.08 -2.39 -0.02 1.53 16 43 H 0.06 1.02 6.73 -2.39 -0.02 1.00 16 Total: -1.00 -73.35 333.27 2.76 -70.59 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.93 Total: 9.24 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 7.45 Total: -16.72 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -7.50 Total: -111.06 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.96 kcal Total: -73.35 2.76 -70.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.307 kcal (2) G-P(sol) polarization free energy of solvation -73.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds