Wall clock time and date at job start Tue Mar 31 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46702 * 2 1 4 4 C 1.53003 * 109.47008 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47214 * 179.31094 * 4 3 2 6 6 C 1.46899 * 111.00423 * 296.89307 * 5 4 3 7 7 C 1.52998 * 109.47019 * 297.74264 * 6 5 4 8 8 C 1.47204 * 109.46937 * 185.19538 * 7 6 5 9 9 N 6.59417 * 109.45707 * 311.98111 * 2 1 3 10 10 C 1.46907 * 110.99898 * 60.85028 * 5 4 3 11 11 C 1.52998 * 109.46951 * 179.97438 * 10 5 4 12 12 C 1.53004 * 109.46934 * 179.97438 * 11 10 5 13 13 C 1.53005 * 109.47033 * 60.00044 * 12 11 10 14 14 C 1.50696 * 109.47242 * 60.00030 * 13 12 11 15 15 H 1.08006 * 119.99776 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00557 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99483 * 359.72019 * 16 14 13 18 18 Si 1.86800 * 120.00560 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47209 * 89.99466 * 18 16 14 20 20 H 1.48500 * 109.47173 * 209.99472 * 18 16 14 21 21 H 1.48498 * 109.46965 * 329.99518 * 18 16 14 22 22 C 1.53006 * 109.47078 * 299.99984 * 13 12 11 23 23 C 1.52994 * 109.46987 * 59.99492 * 10 5 4 24 24 H 1.09003 * 109.47277 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47459 * 300.00292 * 1 2 3 26 26 H 1.09002 * 109.46977 * 60.00304 * 1 2 3 27 27 H 1.08997 * 109.47459 * 239.99708 * 2 1 3 28 28 H 1.09002 * 109.46977 * 119.99695 * 2 1 3 29 29 H 1.08993 * 109.47709 * 60.00055 * 3 2 1 30 30 H 1.09002 * 109.47156 * 299.99586 * 3 2 1 31 31 H 1.09000 * 109.47099 * 59.31214 * 4 3 2 32 32 H 1.08998 * 109.47062 * 299.31490 * 4 3 2 33 33 H 1.08997 * 109.46668 * 57.74079 * 6 5 4 34 34 H 1.09001 * 109.47323 * 177.73956 * 6 5 4 35 35 H 1.09006 * 109.47108 * 305.19267 * 7 6 5 36 36 H 1.09005 * 109.47166 * 65.19536 * 7 6 5 37 37 H 1.09004 * 109.46810 * 299.99516 * 10 5 4 38 38 H 1.08997 * 109.47243 * 59.99933 * 11 10 5 39 39 H 1.08994 * 109.47130 * 299.99464 * 11 10 5 40 40 H 1.09003 * 109.47300 * 300.00449 * 12 11 10 41 41 H 1.08997 * 109.47234 * 180.02562 * 12 11 10 42 42 H 1.08997 * 109.47376 * 179.97438 * 13 12 11 43 43 H 0.96999 * 119.99745 * 180.02562 * 17 16 14 44 44 H 1.08997 * 109.47096 * 179.97438 * 22 13 12 45 45 H 1.08994 * 109.47034 * 300.00207 * 22 13 12 46 46 H 1.08997 * 109.47474 * 300.00292 * 23 10 5 47 47 H 1.09004 * 109.47326 * 60.00340 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8275 -0.0160 6 6 3.6507 3.5157 -1.2477 7 6 4.2711 2.8108 -2.4557 8 6 3.9647 3.5713 -3.6782 9 7 3.7266 4.1589 -4.6219 10 6 3.6047 3.5610 1.1728 11 6 4.1337 4.9956 1.1202 12 6 3.6594 5.7598 2.3579 13 6 4.1857 5.0679 3.6171 14 6 5.6922 5.0470 3.5864 15 1 6.2214 5.4831 2.7520 16 6 6.3949 4.4702 4.6229 17 7 5.7506 3.9431 5.6411 18 14 8.2624 4.4448 4.5852 19 1 8.7874 5.6698 5.2401 20 1 8.7559 3.2461 5.3095 21 1 8.7284 4.3984 3.1760 22 6 3.6566 3.6332 3.6697 23 6 4.1318 2.8693 2.4315 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9180 -0.8829 32 1 3.9329 0.9396 0.8969 33 1 2.5643 3.4937 -1.3326 34 1 3.9919 4.5505 -1.2161 35 1 5.3517 2.7512 -2.3261 36 1 3.8592 1.8051 -2.5406 37 1 2.5150 3.5758 1.1956 38 1 3.7585 5.4886 0.2234 39 1 5.2233 4.9804 1.0976 40 1 2.5697 5.7749 2.3802 41 1 4.0359 6.7820 2.3203 42 1 3.8482 5.6125 4.4989 43 1 6.2450 3.5376 6.3705 44 1 4.0318 3.1402 4.5664 45 1 2.5670 3.6484 3.6918 46 1 3.7553 1.8471 2.4691 47 1 5.2215 2.8544 2.4087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173335464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:47 Heat of formation + Delta-G solvation = -13.572139 kcal Electronic energy + Delta-G solvation = -22879.992498 eV Core-core repulsion = 19868.025902 eV Total energy + Delta-G solvation = -3011.966596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.61519 -38.20846 -37.36750 -35.27302 -34.15903 -32.49814 -31.20016 -30.35905 -28.39162 -26.57074 -25.38870 -23.38140 -22.67026 -22.32204 -20.84237 -19.96470 -18.58611 -17.70587 -17.01710 -16.60278 -16.18190 -16.00108 -15.62341 -15.38781 -14.93503 -14.71933 -14.50576 -14.39150 -14.04775 -13.69843 -13.54192 -13.38949 -13.20111 -13.07370 -12.79056 -12.65986 -12.61307 -12.53888 -12.28689 -12.13049 -12.04875 -11.83747 -11.78797 -11.64115 -11.57617 -11.36181 -11.06448 -10.86749 -10.57379 -10.32708 -10.21055 -8.97505 -7.95990 -6.04841 1.45454 1.48260 1.56665 1.77482 1.86164 2.52328 2.85788 3.33028 3.45378 3.98050 4.05313 4.16037 4.16427 4.25373 4.32976 4.38410 4.52904 4.58843 4.62013 4.73219 4.83212 4.86226 4.89339 4.92587 4.95600 5.04556 5.05211 5.05553 5.10221 5.16058 5.18346 5.26733 5.29059 5.39392 5.46085 5.50516 5.58967 5.65936 5.74448 5.82586 5.83816 6.06279 6.27125 6.35989 6.39462 6.54170 6.65350 7.04581 7.60789 9.08993 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.005219 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.739543 B = 5364.218247 C = 6304.272902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.155 4.155 4 C 0.045 3.955 5 N -0.533 5.533 6 C 0.050 3.950 7 C -0.017 4.017 8 C 0.241 3.759 9 N -0.502 5.502 10 C 0.106 3.894 11 C -0.096 4.096 12 C -0.102 4.102 13 C 0.037 3.963 14 C -0.498 4.498 15 H 0.053 0.947 16 C 0.015 3.985 17 N -0.921 5.921 18 Si 0.939 3.061 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.102 4.102 23 C -0.078 4.078 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.043 0.957 42 H -0.017 1.017 43 H 0.255 0.745 44 H 0.056 0.944 45 H 0.020 0.980 46 H 0.047 0.953 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.638 -8.498 -12.944 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.194 4.194 4 C -0.082 4.082 5 N -0.255 5.255 6 C -0.079 4.079 7 C -0.057 4.057 8 C -0.076 4.076 9 N -0.180 5.180 10 C -0.001 4.001 11 C -0.133 4.133 12 C -0.141 4.141 13 C 0.019 3.981 14 C -0.536 4.536 15 H 0.071 0.929 16 C -0.182 4.182 17 N -0.562 5.562 18 Si 0.766 3.234 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.140 4.140 23 C -0.116 4.116 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.001 0.999 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.065 0.935 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.421 -7.711 -14.195 17.383 hybrid contribution 0.176 0.080 1.169 1.185 sum -6.245 -7.631 -13.026 16.337 Atomic orbital electron populations 1.21781 0.96137 1.01755 1.01393 1.21422 0.95674 0.96000 1.02428 1.22225 0.97664 0.97863 1.01693 1.22437 0.92533 0.89489 1.03755 1.62177 1.59740 1.02640 1.00942 1.22072 0.98501 0.98870 0.88433 1.19458 1.05582 0.97984 0.82646 1.29653 0.91296 0.92467 0.94209 1.81288 1.11315 1.11446 1.13967 1.21382 0.96057 0.93267 0.89433 1.21467 1.01248 0.94242 0.96359 1.21464 0.98187 0.98260 0.96143 1.18698 0.94651 0.92699 0.92052 1.21364 0.92198 1.35523 1.04516 0.92888 1.25569 1.01420 0.95745 0.95501 1.70019 1.36050 1.40394 1.09695 0.85848 0.82317 0.77010 0.78252 1.21041 1.21462 1.19060 1.21362 0.95500 0.98622 0.98551 1.21227 1.00551 0.96683 0.93095 0.92193 0.93858 0.92596 0.90473 0.92575 0.93588 0.91191 0.87820 0.91424 0.93413 0.90439 0.84864 0.84677 0.94474 0.91847 0.92322 0.93652 0.93822 0.99883 0.93556 0.92580 0.96080 0.93451 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 71.98 0.71 -1.65 16 2 C -0.12 -1.81 5.93 30.59 0.18 -1.63 16 3 C -0.16 -2.80 4.53 30.59 0.14 -2.66 16 4 C 0.05 0.86 4.73 86.31 0.41 1.27 16 5 N -0.53 -12.40 4.61 -870.99 -4.01 -16.42 16 6 C 0.05 0.93 4.35 86.30 0.38 1.30 16 7 C -0.02 -0.21 5.38 28.79 0.15 -0.06 16 8 C 0.24 4.63 15.43 89.43 1.38 6.01 16 9 N -0.50 -13.19 18.54 20.02 0.37 -12.82 16 10 C 0.11 3.26 1.57 44.91 0.07 3.33 16 11 C -0.10 -3.22 4.63 30.60 0.14 -3.08 16 12 C -0.10 -4.01 5.41 30.60 0.17 -3.85 16 13 C 0.04 1.81 2.58 -11.54 -0.03 1.78 16 14 C -0.50 -26.02 6.61 25.60 0.17 -25.85 16 15 H 0.05 2.75 6.71 -2.91 -0.02 2.73 16 16 C 0.02 0.82 5.30 84.65 0.45 1.26 16 17 N -0.92 -52.39 11.33 21.45 0.24 -52.14 16 18 Si 0.94 43.02 29.54 68.60 2.03 45.05 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 C -0.10 -4.60 5.24 30.61 0.16 -4.44 16 23 C -0.08 -2.96 4.75 30.61 0.15 -2.81 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 25 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.05 1.06 6.46 -2.39 -0.02 1.04 16 30 H 0.07 1.14 6.39 -2.39 -0.02 1.12 16 31 H 0.10 1.32 6.32 -2.39 -0.02 1.30 16 32 H 0.07 1.54 6.26 -2.39 -0.01 1.52 16 33 H 0.05 0.84 6.26 -2.39 -0.01 0.83 16 34 H 0.08 1.62 5.89 -2.39 -0.01 1.61 16 35 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.14 1.01 6.66 -2.38 -0.02 0.99 16 37 H 0.04 1.13 6.34 -2.38 -0.02 1.11 16 38 H 0.06 1.81 6.21 -2.39 -0.01 1.79 16 39 H 0.06 2.25 6.62 -2.39 -0.02 2.23 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.06 2.94 6.08 -2.39 -0.01 2.93 16 45 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.05 1.64 6.39 -2.39 -0.02 1.62 16 47 H 0.05 2.19 7.22 -2.38 -0.02 2.18 16 Total: -1.00 -62.32 351.22 4.19 -58.13 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.94 Total: 9.29 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.62 Total: -31.08 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -3.40 Total: -81.38 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.32 4.19 -58.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.558 kcal (2) G-P(sol) polarization free energy of solvation -62.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds