Wall clock time and date at job start Tue Mar 31 2020 01:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48163 * 111.00081 * 2 1 4 4 C 1.52872 * 85.83771 * 223.11330 * 3 2 1 5 5 C 1.48163 * 111.00249 * 260.41120 * 2 1 3 6 6 C 1.53621 * 115.51891 * 265.97822 * 4 3 2 7 7 C 1.55174 * 102.62769 * 251.34606 * 6 4 3 8 8 N 1.48694 * 103.40772 * 323.46976 * 7 6 4 9 9 C 1.46897 * 111.04577 * 159.12188 * 8 7 6 10 10 C 1.53005 * 109.47379 * 177.54766 * 9 8 7 11 11 C 1.52998 * 109.47214 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47105 * 60.00242 * 11 10 9 13 13 C 1.50702 * 109.46802 * 59.99497 * 12 11 10 14 14 H 1.07996 * 120.00367 * 239.99627 * 13 12 11 15 15 C 1.37878 * 120.00031 * 60.00823 * 13 12 11 16 16 N 1.31518 * 119.99612 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99932 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47226 * 89.99998 * 17 15 13 19 19 H 1.48507 * 109.46703 * 209.99353 * 17 15 13 20 20 H 1.48497 * 109.47134 * 329.99452 * 17 15 13 21 21 C 1.52997 * 109.46837 * 300.00164 * 12 11 10 22 22 C 1.52997 * 109.46896 * 57.54766 * 9 8 7 23 23 C 1.48203 * 105.84372 * 38.57110 * 8 7 6 24 24 H 1.09001 * 109.46864 * 60.00031 * 1 2 3 25 25 H 1.08994 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47526 * 300.00322 * 1 2 3 27 27 H 1.09000 * 113.81401 * 108.88324 * 3 2 1 28 28 H 1.08997 * 113.81303 * 337.34340 * 3 2 1 29 29 H 1.08994 * 113.81384 * 22.65619 * 5 2 1 30 30 H 1.08998 * 113.81663 * 251.11534 * 5 2 1 31 31 H 1.09004 * 110.77909 * 9.62691 * 6 4 3 32 32 H 1.08992 * 110.78202 * 132.86843 * 6 4 3 33 33 H 1.08998 * 110.63840 * 81.91343 * 7 6 4 34 34 H 1.08994 * 110.63706 * 204.81190 * 7 6 4 35 35 H 1.09001 * 109.47335 * 297.54423 * 9 8 7 36 36 H 1.09000 * 109.47334 * 300.00263 * 10 9 8 37 37 H 1.09002 * 109.46584 * 60.00093 * 10 9 8 38 38 H 1.09000 * 109.47251 * 300.00396 * 11 10 9 39 39 H 1.09002 * 109.47014 * 179.97438 * 11 10 9 40 40 H 1.08996 * 109.47354 * 179.97438 * 12 11 10 41 41 H 0.97008 * 119.99381 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.47191 * 299.99645 * 21 12 11 43 43 H 1.08998 * 109.47240 * 180.02562 * 21 12 11 44 44 H 1.08991 * 109.47402 * 299.99995 * 22 9 8 45 45 H 1.09000 * 109.46914 * 60.00290 * 22 9 8 46 46 H 1.09002 * 110.03050 * 215.60735 * 23 8 7 47 47 H 1.09000 * 110.02664 * 94.23888 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0000 1.3832 0.0000 4 6 2.9993 0.8807 -1.0420 5 6 2.0000 -0.2304 -1.3639 6 6 4.3539 0.4132 -0.4884 7 6 5.3181 1.5339 -0.9598 8 7 4.7920 1.8996 -2.3016 9 6 5.2418 3.2410 -2.6969 10 6 4.7319 3.5556 -4.1048 11 6 5.1999 4.9529 -4.5163 12 6 6.7291 5.0026 -4.5048 13 6 7.2720 3.9850 -5.4748 14 1 7.9163 3.1931 -5.1224 15 6 6.9462 4.0649 -6.8121 16 7 6.1613 5.0291 -7.2412 17 14 7.6198 2.8040 -8.0145 18 1 6.6794 1.6586 -8.1091 19 1 7.7744 3.4293 -9.3526 20 1 8.9409 2.3217 -7.5378 21 6 7.2389 4.6879 -3.0970 22 6 6.7709 3.2900 -2.6855 23 6 3.3154 1.8475 -2.1852 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.4590 1.6784 0.9435 28 1 1.2986 2.1239 -0.3841 29 1 1.2987 0.0250 -2.1582 30 1 2.4591 -1.2099 -1.4978 31 1 4.3284 0.3574 0.5999 32 1 4.6355 -0.5487 -0.9168 33 1 5.2735 2.3883 -0.2844 34 1 6.3381 1.1571 -1.0338 35 1 4.8494 3.9773 -1.9955 36 1 5.1242 2.8194 -4.8063 37 1 3.6425 3.5206 -4.1128 38 1 4.8072 5.6889 -3.8147 39 1 4.8370 5.1769 -5.5195 40 1 7.0625 5.9979 -4.7984 41 1 5.9319 5.0851 -8.1820 42 1 6.8462 5.4239 -2.3954 43 1 8.3283 4.7237 -3.0887 44 1 7.1342 3.0659 -1.6827 45 1 7.1633 2.5538 -3.3871 46 1 2.8804 1.4811 -3.1151 47 1 2.9239 2.8384 -1.9553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:51 Heat of formation + Delta-G solvation = 27.896435 kcal Electronic energy + Delta-G solvation = -23083.450689 eV Core-core repulsion = 20073.282306 eV Total energy + Delta-G solvation = -3010.168383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86370 -38.40935 -36.12437 -32.66750 -31.22435 -30.10268 -29.02824 -28.09699 -26.42780 -25.97043 -24.51278 -22.34000 -21.88907 -20.98369 -19.91766 -18.63818 -18.53395 -16.07505 -16.01110 -15.58375 -15.37292 -14.85769 -14.65688 -14.33318 -13.93831 -13.41532 -13.17267 -12.91714 -12.86903 -12.67243 -12.43374 -12.13978 -12.01138 -11.46477 -11.30156 -11.20764 -10.96043 -10.90084 -10.85433 -10.78204 -10.50503 -10.41629 -10.39404 -10.22120 -10.02133 -9.55287 -9.13345 -8.99906 -8.78656 -8.54903 -8.21327 -7.97601 -5.89982 -3.93472 3.36141 3.42780 3.46163 3.72109 4.17244 4.37072 4.49758 4.51534 4.86692 4.93579 5.03185 5.15761 5.26843 5.35440 5.40937 5.43156 5.52900 5.60532 5.63829 5.67026 5.71657 5.80150 5.87069 5.99250 6.05920 6.08448 6.12510 6.18965 6.21949 6.31488 6.50380 6.54843 6.61304 6.75562 6.79471 6.82656 6.87452 7.14373 7.26207 7.31510 7.45274 7.59024 7.73382 7.81742 8.00295 8.22235 8.56086 9.08580 9.69514 11.16080 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.024740 B = 0.004314 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.489812 B = 6488.556935 C = 6763.358568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.484 5.484 3 C 0.011 3.989 4 C -0.096 4.096 5 C 0.017 3.983 6 C -0.091 4.091 7 C 0.036 3.964 8 N -0.509 5.509 9 C 0.087 3.913 10 C -0.089 4.089 11 C -0.107 4.107 12 C 0.044 3.956 13 C -0.497 4.497 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.884 3.116 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.275 1.275 21 C -0.106 4.106 22 C -0.097 4.097 23 C 0.052 3.948 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.079 0.921 37 H 0.027 0.973 38 H 0.010 0.990 39 H 0.092 0.908 40 H 0.023 0.977 41 H 0.257 0.743 42 H 0.030 0.970 43 H 0.047 0.953 44 H 0.034 0.966 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.612 -7.447 13.500 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.206 5.206 3 C -0.117 4.117 4 C -0.097 4.097 5 C -0.112 4.112 6 C -0.129 4.129 7 C -0.092 4.092 8 N -0.233 5.233 9 C -0.021 4.021 10 C -0.126 4.126 11 C -0.146 4.146 12 C 0.026 3.974 13 C -0.535 4.535 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.712 3.288 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.200 1.200 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.077 4.077 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.029 0.971 39 H 0.110 0.890 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.355 -8.185 13.465 17.836 hybrid contribution -0.488 0.508 -0.771 1.045 sum -8.843 -7.677 12.694 17.271 Atomic orbital electron populations 1.22858 0.89974 1.02244 1.00955 1.68504 1.08701 1.18488 1.24935 1.23971 0.96740 0.91300 0.99724 1.22453 0.95427 0.96108 0.95707 1.23975 0.96569 1.00011 0.90645 1.22159 0.91860 0.98884 1.00029 1.23258 0.99247 0.96653 0.90044 1.64934 1.05492 1.28055 1.24825 1.21877 0.96393 0.86410 0.97412 1.21381 0.96697 1.00156 0.94401 1.21522 0.99045 0.92697 1.01297 1.18685 0.91843 0.96896 0.90019 1.21148 1.28660 1.11747 0.91935 0.92646 1.24923 0.95305 0.95482 0.98242 1.69875 1.36481 1.32079 1.14865 0.86717 0.79487 0.81844 0.80707 1.20766 1.21505 1.20034 1.21562 0.99183 0.94644 0.99039 1.21471 0.93499 0.99339 0.99196 1.22712 0.90260 0.97293 0.97414 0.94737 0.91271 0.91556 0.89382 0.91208 0.91035 0.89099 0.90953 0.90453 0.94287 0.90057 0.95755 0.90277 0.95389 0.97141 0.88994 0.95906 0.93272 0.95140 0.93436 0.94704 0.90340 0.90329 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.64 60.06 0.58 0.48 16 2 N -0.48 -5.18 6.55 -252.01 -1.65 -6.83 16 3 C 0.01 0.12 7.11 -3.19 -0.02 0.10 16 4 C -0.10 -1.12 1.14 -154.44 -0.18 -1.30 16 5 C 0.02 0.18 7.16 -3.20 -0.02 0.16 16 6 C -0.09 -1.07 6.45 -25.26 -0.16 -1.23 16 7 C 0.04 0.49 5.32 -1.68 -0.01 0.48 16 8 N -0.51 -8.26 5.12 -222.57 -1.14 -9.40 16 9 C 0.09 1.60 1.65 -67.71 -0.11 1.49 16 10 C -0.09 -1.87 4.97 -26.73 -0.13 -2.01 16 11 C -0.11 -2.51 5.24 -26.73 -0.14 -2.65 16 12 C 0.04 1.08 2.59 -91.77 -0.24 0.84 16 13 C -0.50 -13.25 6.61 -34.44 -0.23 -13.48 16 14 H 0.06 1.48 6.71 -52.49 -0.35 1.13 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 17 Si 0.88 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.11 -2.21 5.41 -26.70 -0.14 -2.36 16 22 C -0.10 -1.87 4.78 -26.70 -0.13 -2.00 16 23 C 0.05 0.73 5.11 -3.10 -0.02 0.72 16 24 H 0.03 0.29 7.63 -51.93 -0.40 -0.10 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.90 8.00 -51.93 -0.42 0.49 16 28 H 0.07 0.71 7.91 -51.93 -0.41 0.30 16 29 H 0.07 0.73 7.58 -51.93 -0.39 0.34 16 30 H 0.09 0.96 8.03 -51.93 -0.42 0.55 16 31 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 32 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 33 H 0.04 0.53 8.01 -51.93 -0.42 0.11 16 34 H 0.08 1.11 7.69 -51.93 -0.40 0.71 16 35 H 0.02 0.45 7.96 -51.93 -0.41 0.04 16 36 H 0.08 1.90 7.22 -51.93 -0.37 1.53 16 37 H 0.03 0.55 7.35 -51.93 -0.38 0.17 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 40 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.03 0.59 6.90 -51.93 -0.36 0.23 16 45 H 0.08 1.68 6.62 -51.93 -0.34 1.33 16 46 H 0.08 1.15 7.91 -51.93 -0.41 0.74 16 47 H 0.04 0.64 7.46 -51.93 -0.39 0.25 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -27.60 344.45 -11.72 -39.32 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.68 Total: -0.74 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -1.05 Total: -19.19 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -2.16 Total: -40.93 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.60 -11.72 -39.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.216 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds