Wall clock time and date at job start Tue Mar 31 2020 01:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48163 * 111.00081 * 2 1 4 4 C 1.52872 * 85.83771 * 223.11330 * 3 2 1 5 5 C 1.48163 * 111.00249 * 260.41120 * 2 1 3 6 6 C 1.53621 * 115.51891 * 265.97822 * 4 3 2 7 7 C 1.55174 * 102.62769 * 251.34606 * 6 4 3 8 8 N 1.48694 * 103.40772 * 323.46976 * 7 6 4 9 9 C 1.46897 * 111.04577 * 159.12188 * 8 7 6 10 10 C 1.53005 * 109.47379 * 177.54766 * 9 8 7 11 11 C 1.52998 * 109.47214 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47105 * 60.00242 * 11 10 9 13 13 C 1.50702 * 109.46802 * 59.99497 * 12 11 10 14 14 H 1.07996 * 120.00367 * 239.99627 * 13 12 11 15 15 C 1.37878 * 120.00031 * 60.00823 * 13 12 11 16 16 N 1.31518 * 119.99612 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99932 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47226 * 89.99998 * 17 15 13 19 19 H 1.48507 * 109.46703 * 209.99353 * 17 15 13 20 20 H 1.48497 * 109.47134 * 329.99452 * 17 15 13 21 21 C 1.52997 * 109.46837 * 300.00164 * 12 11 10 22 22 C 1.52997 * 109.46896 * 57.54766 * 9 8 7 23 23 C 1.48203 * 105.84372 * 38.57110 * 8 7 6 24 24 H 1.09001 * 109.46864 * 60.00031 * 1 2 3 25 25 H 1.08994 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47526 * 300.00322 * 1 2 3 27 27 H 1.09000 * 113.81401 * 108.88324 * 3 2 1 28 28 H 1.08997 * 113.81303 * 337.34340 * 3 2 1 29 29 H 1.08994 * 113.81384 * 22.65619 * 5 2 1 30 30 H 1.08998 * 113.81663 * 251.11534 * 5 2 1 31 31 H 1.09004 * 110.77909 * 9.62691 * 6 4 3 32 32 H 1.08992 * 110.78202 * 132.86843 * 6 4 3 33 33 H 1.08998 * 110.63840 * 81.91343 * 7 6 4 34 34 H 1.08994 * 110.63706 * 204.81190 * 7 6 4 35 35 H 1.09001 * 109.47335 * 297.54423 * 9 8 7 36 36 H 1.09000 * 109.47334 * 300.00263 * 10 9 8 37 37 H 1.09002 * 109.46584 * 60.00093 * 10 9 8 38 38 H 1.09000 * 109.47251 * 300.00396 * 11 10 9 39 39 H 1.09002 * 109.47014 * 179.97438 * 11 10 9 40 40 H 1.08996 * 109.47354 * 179.97438 * 12 11 10 41 41 H 0.97008 * 119.99381 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.47191 * 299.99645 * 21 12 11 43 43 H 1.08998 * 109.47240 * 180.02562 * 21 12 11 44 44 H 1.08991 * 109.47402 * 299.99995 * 22 9 8 45 45 H 1.09000 * 109.46914 * 60.00290 * 22 9 8 46 46 H 1.09002 * 110.03050 * 215.60735 * 23 8 7 47 47 H 1.09000 * 110.02664 * 94.23888 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0000 1.3832 0.0000 4 6 2.9993 0.8807 -1.0420 5 6 2.0000 -0.2304 -1.3639 6 6 4.3539 0.4132 -0.4884 7 6 5.3181 1.5339 -0.9598 8 7 4.7920 1.8996 -2.3016 9 6 5.2418 3.2410 -2.6969 10 6 4.7319 3.5556 -4.1048 11 6 5.1999 4.9529 -4.5163 12 6 6.7291 5.0026 -4.5048 13 6 7.2720 3.9850 -5.4748 14 1 7.9163 3.1931 -5.1224 15 6 6.9462 4.0649 -6.8121 16 7 6.1613 5.0291 -7.2412 17 14 7.6198 2.8040 -8.0145 18 1 6.6794 1.6586 -8.1091 19 1 7.7744 3.4293 -9.3526 20 1 8.9409 2.3217 -7.5378 21 6 7.2389 4.6879 -3.0970 22 6 6.7709 3.2900 -2.6855 23 6 3.3154 1.8475 -2.1852 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.4590 1.6784 0.9435 28 1 1.2986 2.1239 -0.3841 29 1 1.2987 0.0250 -2.1582 30 1 2.4591 -1.2099 -1.4978 31 1 4.3284 0.3574 0.5999 32 1 4.6355 -0.5487 -0.9168 33 1 5.2735 2.3883 -0.2844 34 1 6.3381 1.1571 -1.0338 35 1 4.8494 3.9773 -1.9955 36 1 5.1242 2.8194 -4.8063 37 1 3.6425 3.5206 -4.1128 38 1 4.8072 5.6889 -3.8147 39 1 4.8370 5.1769 -5.5195 40 1 7.0625 5.9979 -4.7984 41 1 5.9319 5.0851 -8.1820 42 1 6.8462 5.4239 -2.3954 43 1 8.3283 4.7237 -3.0887 44 1 7.1342 3.0659 -1.6827 45 1 7.1633 2.5538 -3.3871 46 1 2.8804 1.4811 -3.1151 47 1 2.9239 2.8384 -1.9553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:50 Heat of formation + Delta-G solvation = 10.226806 kcal Electronic energy + Delta-G solvation = -23084.216901 eV Core-core repulsion = 20073.282306 eV Total energy + Delta-G solvation = -3010.934596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.80261 -39.85369 -37.51572 -34.45342 -32.64409 -31.58545 -30.31770 -29.49441 -27.30596 -27.20436 -26.29427 -23.60548 -23.11068 -22.34450 -21.37564 -20.46234 -19.46658 -17.80194 -17.19351 -16.80294 -16.54523 -16.21791 -15.98569 -15.59359 -15.19376 -14.92868 -14.72337 -14.44645 -13.95893 -13.81651 -13.65021 -13.34361 -13.29802 -12.91077 -12.79678 -12.68929 -12.63338 -12.41024 -12.23549 -12.09203 -11.96257 -11.90459 -11.79893 -11.43002 -11.34441 -11.28375 -10.92126 -10.67190 -10.42834 -10.26728 -9.80816 -9.22277 -8.00762 -6.09810 1.41730 1.43764 1.51980 2.48052 2.90630 3.06045 3.27888 3.40496 3.55423 3.91158 4.08382 4.11394 4.14690 4.16015 4.37786 4.44581 4.49272 4.51252 4.58269 4.63204 4.67210 4.75349 4.77346 4.81188 4.86844 4.87920 4.92628 4.97396 4.99616 5.01033 5.05726 5.13338 5.20964 5.24094 5.26297 5.32947 5.42468 5.57812 5.66570 5.71022 5.76417 5.98945 6.03354 6.11057 6.23147 6.30983 6.49115 6.99334 7.55735 9.04183 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.024740 B = 0.004314 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.489812 B = 6488.556935 C = 6763.358568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.493 5.493 3 C 0.016 3.984 4 C -0.094 4.094 5 C 0.018 3.982 6 C -0.083 4.083 7 C 0.035 3.965 8 N -0.526 5.526 9 C 0.098 3.902 10 C -0.077 4.077 11 C -0.102 4.102 12 C 0.039 3.961 13 C -0.502 4.502 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.920 5.920 17 Si 0.940 3.060 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.269 1.269 21 C -0.101 4.101 22 C -0.090 4.090 23 C 0.052 3.948 24 H 0.036 0.964 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.024 0.976 39 H 0.058 0.942 40 H -0.012 1.012 41 H 0.256 0.744 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 -8.717 15.432 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.215 5.215 3 C -0.112 4.112 4 C -0.095 4.095 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.092 4.092 8 N -0.250 5.250 9 C -0.010 4.010 10 C -0.115 4.115 11 C -0.141 4.141 12 C 0.020 3.980 13 C -0.540 4.540 14 H 0.070 0.930 15 C -0.183 4.183 16 N -0.561 5.561 17 Si 0.767 3.233 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.194 1.194 21 C -0.139 4.139 22 C -0.127 4.127 23 C -0.076 4.076 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.007 0.993 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.830 -9.465 15.409 20.125 hybrid contribution -0.355 0.929 -1.370 1.693 sum -9.185 -8.536 14.039 18.824 Atomic orbital electron populations 1.22895 0.88866 1.02843 1.01467 1.68498 1.09899 1.18471 1.24620 1.23969 0.96329 0.91441 0.99511 1.22428 0.95895 0.96020 0.95205 1.23972 0.96367 0.99694 0.91025 1.22108 0.91115 0.98010 1.00839 1.23314 0.99659 0.97518 0.88707 1.64844 1.06965 1.26290 1.26877 1.21612 0.95732 0.88088 0.95562 1.21183 0.97192 0.97530 0.95622 1.21372 0.98258 0.94624 0.99818 1.18684 0.92657 0.94528 0.92115 1.21392 1.28240 1.11813 0.92568 0.93009 1.25592 0.95738 0.97106 0.99908 1.70014 1.37582 1.33529 1.14964 0.85830 0.79033 0.79739 0.78729 1.20592 1.21346 1.19382 1.21469 0.99254 0.96311 0.96880 1.21367 0.94035 0.97304 1.00023 1.22708 0.88887 0.97901 0.98095 0.94521 0.90684 0.90741 0.88739 0.90816 0.90749 0.88990 0.89468 0.90551 0.93641 0.90066 0.95031 0.93588 0.94325 0.95751 0.92389 0.99349 0.93472 0.93334 0.93360 0.91788 0.92766 0.91342 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.64 127.69 1.23 1.05 16 2 N -0.49 -9.26 6.55 -951.21 -6.23 -15.49 16 3 C 0.02 0.30 7.11 86.02 0.61 0.91 16 4 C -0.09 -1.99 1.14 -52.01 -0.06 -2.05 16 5 C 0.02 0.35 7.16 86.01 0.62 0.97 16 6 C -0.08 -1.72 6.45 31.55 0.20 -1.52 16 7 C 0.04 0.88 5.32 86.70 0.46 1.34 16 8 N -0.53 -16.21 5.12 -858.08 -4.39 -20.61 16 9 C 0.10 3.49 1.65 44.92 0.07 3.57 16 10 C -0.08 -3.28 4.97 30.60 0.15 -3.13 16 11 C -0.10 -4.87 5.24 30.60 0.16 -4.71 16 12 C 0.04 1.93 2.59 -11.54 -0.03 1.90 16 13 C -0.50 -27.28 6.61 25.60 0.17 -27.11 16 14 H 0.05 2.80 6.71 -2.91 -0.02 2.78 16 15 C 0.01 0.79 5.30 84.65 0.45 1.23 16 16 N -0.92 -53.65 11.32 21.45 0.24 -53.41 16 17 Si 0.94 44.44 29.54 68.60 2.03 46.46 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 C -0.10 -4.12 5.41 30.61 0.17 -3.96 16 22 C -0.09 -3.31 4.78 30.61 0.15 -3.16 16 23 C 0.05 1.40 5.11 86.06 0.44 1.84 16 24 H 0.04 0.54 7.63 -2.39 -0.02 0.52 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.64 8.00 -2.39 -0.02 1.62 16 28 H 0.07 1.30 7.91 -2.39 -0.02 1.29 16 29 H 0.07 1.39 7.58 -2.39 -0.02 1.38 16 30 H 0.09 1.76 8.03 -2.39 -0.02 1.74 16 31 H 0.09 1.58 7.88 -2.38 -0.02 1.56 16 32 H 0.08 1.61 8.03 -2.39 -0.02 1.59 16 33 H 0.05 1.09 8.01 -2.39 -0.02 1.07 16 34 H 0.08 2.01 7.69 -2.39 -0.02 2.00 16 35 H 0.03 1.10 7.96 -2.39 -0.02 1.08 16 36 H 0.05 2.25 7.22 -2.39 -0.02 2.23 16 37 H 0.04 1.52 7.35 -2.39 -0.02 1.50 16 38 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 40 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.06 2.00 6.90 -2.39 -0.02 1.98 16 45 H 0.05 2.28 6.62 -2.39 -0.02 2.26 16 46 H 0.07 1.94 7.91 -2.39 -0.02 1.92 16 47 H 0.04 1.14 7.46 -2.39 -0.02 1.12 16 Total: -1.00 -59.52 344.45 -2.65 -62.17 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.91 Total: 13.69 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 4.79 Total: -32.82 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -10.38 Total: -89.51 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -59.52 -2.65 -62.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.402 kcal (2) G-P(sol) polarization free energy of solvation -59.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds