Wall clock time and date at job start Tue Mar 31 2020 00:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 109.47428 * 2 1 4 4 C 1.46901 * 109.47450 * 239.99338 * 2 1 3 5 5 C 1.46903 * 109.46879 * 119.99416 * 2 1 3 6 6 C 1.52999 * 109.46987 * 54.13964 * 5 2 1 7 7 H 1.09002 * 109.47726 * 174.15875 * 6 5 2 8 8 C 1.50705 * 109.47059 * 294.15859 * 6 5 2 9 9 H 1.07999 * 119.99927 * 115.45452 * 8 6 5 10 10 C 1.37875 * 119.99994 * 295.17320 * 8 6 5 11 11 N 1.31516 * 120.00084 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 120.00040 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46921 * 90.00498 * 12 10 8 14 14 H 1.48500 * 109.47282 * 210.00352 * 12 10 8 15 15 H 1.48499 * 109.47239 * 330.00526 * 12 10 8 16 16 O 1.42901 * 109.47230 * 54.15886 * 6 5 2 17 17 C 1.42898 * 113.99952 * 94.99077 * 16 6 5 18 18 C 1.53007 * 109.46804 * 184.89429 * 17 16 6 19 19 C 1.50701 * 109.46795 * 180.02562 * 18 17 16 20 20 C 1.38240 * 119.99648 * 269.72560 * 19 18 17 21 21 C 1.38233 * 119.99882 * 179.77084 * 20 19 18 22 22 C 1.38238 * 119.99974 * 0.48004 * 21 20 19 23 23 C 1.38242 * 119.99747 * 359.79181 * 22 21 20 24 24 C 1.38229 * 120.00238 * 359.95653 * 23 22 21 25 25 H 1.08998 * 109.47637 * 290.89070 * 1 2 3 26 26 H 1.09000 * 109.46479 * 50.89058 * 1 2 3 27 27 H 1.08996 * 109.46937 * 170.88486 * 1 2 3 28 28 H 1.08993 * 109.47560 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46791 * 299.99761 * 3 2 1 30 30 H 1.09003 * 109.47491 * 59.99125 * 3 2 1 31 31 H 1.08993 * 109.46985 * 316.36132 * 4 2 1 32 32 H 1.09005 * 109.46799 * 76.36135 * 4 2 1 33 33 H 1.09001 * 109.46972 * 196.35930 * 4 2 1 34 34 H 1.09005 * 109.47053 * 294.14211 * 5 2 1 35 35 H 1.08998 * 109.47372 * 174.13833 * 5 2 1 36 36 H 0.97003 * 120.00063 * 179.97438 * 11 10 8 37 37 H 1.08995 * 109.46986 * 304.89111 * 17 16 6 38 38 H 1.08994 * 109.47391 * 64.89465 * 17 16 6 39 39 H 1.08995 * 109.47089 * 299.99619 * 18 17 16 40 40 H 1.08994 * 109.47117 * 59.99868 * 18 17 16 41 41 H 1.08001 * 119.99957 * 359.97438 * 20 19 18 42 42 H 1.08002 * 120.00320 * 180.25512 * 21 20 19 43 43 H 1.07999 * 119.99939 * 179.77200 * 22 21 20 44 44 H 1.08004 * 119.99497 * 179.97438 * 23 22 21 45 45 H 1.07998 * 120.00271 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3849 0.0000 4 6 1.9588 -0.6926 -1.1993 5 6 1.9586 -0.6924 1.1995 6 6 1.3319 -2.0861 1.2755 7 1 1.7724 -2.6379 2.1059 8 6 -0.1543 -1.9575 1.4899 9 1 -0.8412 -2.3036 0.7317 10 6 -0.6371 -1.4034 2.6564 11 7 0.1993 -0.9866 3.5818 12 14 -2.4792 -1.2434 2.9219 13 1 -2.9921 -2.4694 3.5846 14 1 -2.7549 -0.0641 3.7812 15 1 -3.1550 -1.0696 1.6111 16 8 1.5782 -2.7863 0.0543 17 6 2.7293 -3.6322 0.0914 18 6 2.9656 -4.2328 -1.2959 19 6 4.1792 -5.1254 -1.2566 20 6 5.4299 -4.6037 -1.5295 21 6 6.5437 -5.4214 -1.4889 22 6 6.4056 -6.7629 -1.1851 23 6 5.1542 -7.2857 -0.9178 24 6 4.0410 -6.4670 -0.9533 25 1 -0.3634 0.3664 0.9601 26 1 -0.3632 0.6483 -0.7974 27 1 -0.3633 -1.0147 -0.1628 28 1 3.0487 1.3850 0.0005 29 1 1.5954 1.8987 -0.8901 30 1 1.5953 1.8989 0.8899 31 1 1.3787 -1.6020 -1.3560 32 1 1.8514 -0.0394 -2.0654 33 1 3.0095 -0.9502 -1.0665 34 1 1.6834 -0.1215 2.0864 35 1 3.0436 -0.7842 1.1487 36 1 -0.1404 -0.5964 4.4024 37 1 3.6003 -3.0476 0.3874 38 1 2.5679 -4.4340 0.8118 39 1 2.0945 -4.8174 -1.5918 40 1 3.1269 -3.4310 -2.0163 41 1 5.5372 -3.5566 -1.7712 42 1 7.5214 -5.0130 -1.6980 43 1 7.2754 -7.4025 -1.1570 44 1 5.0463 -8.3339 -0.6809 45 1 3.0633 -6.8755 -0.7449 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204999827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:18 Heat of formation + Delta-G solvation = 79.581338 kcal Electronic energy + Delta-G solvation = -22803.449239 eV Core-core repulsion = 19711.459159 eV Total energy + Delta-G solvation = -3091.990081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.186 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.10293 -40.28381 -38.58332 -35.29950 -34.15479 -31.82900 -31.35427 -30.11775 -29.94975 -29.30877 -27.59123 -24.59278 -24.36964 -23.52359 -22.82645 -21.86646 -19.08380 -18.43543 -18.25180 -17.89784 -17.49695 -16.72568 -16.58217 -16.13668 -15.90655 -15.64776 -15.14255 -14.77933 -14.62450 -14.35904 -14.04215 -13.98344 -13.90856 -13.83063 -13.68375 -13.47620 -13.35363 -13.11417 -13.00774 -12.46215 -12.35397 -12.18399 -12.07200 -11.95883 -11.85421 -11.56625 -11.01892 -10.33437 -10.09892 -9.85754 -9.66812 -7.93182 -6.00251 0.38090 0.46225 0.68417 1.96427 2.07551 2.14910 2.54922 2.66156 2.69533 2.74863 2.84152 3.10956 3.38765 3.39520 3.49652 3.76878 3.82149 3.87073 3.90760 3.91953 4.01365 4.08653 4.12191 4.18815 4.19657 4.22643 4.30079 4.45062 4.51078 4.57411 4.58070 4.62989 4.78663 4.92305 5.00244 5.03343 5.10623 5.12239 5.32564 5.52632 5.60314 5.65441 5.97956 6.06284 6.17034 6.48016 7.06200 7.67042 9.12649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.248 5.248 3 C -0.043 4.043 4 C -0.042 4.042 5 C -0.020 4.020 6 C 0.198 3.802 7 H 0.065 0.935 8 C -0.549 4.549 9 H 0.084 0.916 10 C 0.069 3.931 11 N -0.879 5.879 12 Si 0.901 3.099 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.265 1.265 16 O -0.394 6.394 17 C 0.065 3.935 18 C -0.079 4.079 19 C -0.085 4.085 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.113 4.113 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.160 0.840 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.148 0.852 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.085 0.915 36 H 0.282 0.718 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.357 5.703 -9.520 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 N 0.094 4.906 3 C -0.185 4.185 4 C -0.183 4.183 5 C -0.142 4.142 6 C 0.141 3.859 7 H 0.083 0.917 8 C -0.585 4.585 9 H 0.102 0.898 10 C -0.138 4.138 11 N -0.513 5.513 12 Si 0.726 3.274 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.190 1.190 16 O -0.314 6.314 17 C -0.012 4.012 18 C -0.116 4.116 19 C -0.085 4.085 20 C -0.135 4.135 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.135 4.135 24 C -0.131 4.131 25 H 0.132 0.868 26 H 0.094 0.906 27 H 0.178 0.822 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.166 0.834 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.164 0.836 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.254 5.816 -9.464 12.747 hybrid contribution -0.467 0.072 0.727 0.867 sum 5.787 5.888 -8.737 12.020 Atomic orbital electron populations 1.24933 0.75452 1.11080 1.06112 1.45710 1.16407 1.12933 1.15506 1.24005 1.04268 0.82312 1.07898 1.24395 1.04948 1.02692 0.86285 1.24752 0.99888 1.02173 0.87343 1.20125 0.97186 0.84645 0.83927 0.91706 1.21011 0.89415 1.43571 1.04551 0.89791 1.24974 0.99790 0.94415 0.94634 1.69709 1.35621 1.37999 1.08007 0.86370 0.82254 0.79361 0.79415 1.19273 1.20289 1.18965 1.87766 1.46524 1.60038 1.37058 1.22457 0.88198 0.93751 0.96759 1.20518 0.95964 0.98344 0.96762 1.19722 0.94453 0.94283 1.00011 1.21024 0.92157 0.99634 1.00726 1.21177 0.98681 0.94039 0.99863 1.21225 0.97610 0.95575 0.99596 1.21222 0.92700 1.00043 0.99548 1.21137 0.99090 0.93281 0.99612 0.86761 0.90565 0.82204 0.87581 0.87399 0.86915 0.83429 0.88825 0.88326 0.83615 0.89666 0.90734 0.93992 0.92764 0.89860 0.90715 0.86287 0.86022 0.86008 0.85875 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.18 6.59 60.07 0.40 0.57 16 2 N -0.25 1.75 0.05 -395.62 -0.02 1.73 16 3 C -0.04 0.42 7.93 60.06 0.48 0.89 16 4 C -0.04 0.35 7.20 60.07 0.43 0.78 16 5 C -0.02 0.06 4.20 -3.82 -0.02 0.05 16 6 C 0.20 0.25 2.24 -27.88 -0.06 0.19 16 7 H 0.07 0.31 7.76 -51.93 -0.40 -0.09 16 8 C -0.55 -2.30 5.18 -34.44 -0.18 -2.48 16 9 H 0.08 0.39 6.75 -52.49 -0.35 0.03 16 10 C 0.07 0.44 4.14 -17.82 -0.07 0.37 16 11 N -0.88 -6.84 11.67 55.43 0.65 -6.19 16 12 Si 0.90 5.92 29.54 -169.99 -5.02 0.90 16 13 H -0.27 -2.36 7.11 56.52 0.40 -1.96 16 14 H -0.28 -2.11 7.11 56.52 0.40 -1.71 16 15 H -0.27 -1.55 7.11 56.52 0.40 -1.15 16 16 O -0.39 0.32 5.90 -35.23 -0.21 0.11 16 17 C 0.06 -0.08 5.70 37.16 0.21 0.14 16 18 C -0.08 0.16 5.72 -27.88 -0.16 0.00 16 19 C -0.08 0.04 5.13 -104.62 -0.54 -0.50 16 20 C -0.12 0.09 9.70 -39.58 -0.38 -0.30 16 21 C -0.12 0.03 10.05 -39.58 -0.40 -0.37 16 22 C -0.12 -0.03 10.05 -39.58 -0.40 -0.42 16 23 C -0.12 -0.05 10.05 -39.58 -0.40 -0.45 16 24 C -0.11 -0.05 9.70 -39.59 -0.38 -0.43 16 25 H 0.11 -0.29 6.53 -51.93 -0.34 -0.63 16 26 H 0.08 -0.59 8.01 -51.93 -0.42 -1.01 16 27 H 0.16 -0.42 4.23 -51.93 -0.22 -0.64 16 28 H 0.11 -1.16 8.14 -51.93 -0.42 -1.58 16 29 H 0.11 -1.25 7.96 -51.93 -0.41 -1.66 16 30 H 0.11 -1.03 8.11 -51.93 -0.42 -1.45 16 31 H 0.15 -0.92 5.20 -51.93 -0.27 -1.19 16 32 H 0.09 -0.99 7.86 -51.93 -0.41 -1.40 16 33 H 0.10 -0.87 7.77 -51.93 -0.40 -1.27 16 34 H 0.15 -0.06 6.28 -51.93 -0.33 -0.39 16 35 H 0.08 -0.41 7.88 -51.93 -0.41 -0.82 16 36 H 0.28 2.39 8.31 -40.82 -0.34 2.05 16 37 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.05 0.06 8.14 -51.93 -0.42 -0.37 16 39 H 0.08 -0.12 8.08 -51.93 -0.42 -0.54 16 40 H 0.07 -0.29 8.08 -51.93 -0.42 -0.71 16 41 H 0.12 -0.35 8.06 -52.49 -0.42 -0.77 16 42 H 0.12 -0.23 8.06 -52.49 -0.42 -0.66 16 43 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 44 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 45 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 LS Contribution 345.57 15.07 5.21 5.21 Total: 0.00 -11.60 345.57 -8.60 -20.21 By element: Atomic # 1 Polarization: -12.26 SS G_CDS: -7.74 Total: -20.00 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.47 Total: -1.97 kcal Atomic # 7 Polarization: -5.09 SS G_CDS: 0.63 Total: -4.46 kcal Atomic # 8 Polarization: 0.32 SS G_CDS: -0.21 Total: 0.11 kcal Atomic # 14 Polarization: 5.92 SS G_CDS: -5.02 Total: 0.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -11.60 -8.60 -20.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204999827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.788 kcal (2) G-P(sol) polarization free energy of solvation -11.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds