Wall clock time and date at job start Tue Mar 31 2020 00:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 109.47428 * 2 1 4 4 C 1.46901 * 109.47450 * 239.99338 * 2 1 3 5 5 C 1.46903 * 109.46879 * 119.99416 * 2 1 3 6 6 C 1.52999 * 109.46987 * 54.13964 * 5 2 1 7 7 H 1.09002 * 109.47726 * 174.15875 * 6 5 2 8 8 C 1.50705 * 109.47059 * 294.15859 * 6 5 2 9 9 H 1.07999 * 119.99927 * 115.45452 * 8 6 5 10 10 C 1.37875 * 119.99994 * 295.17320 * 8 6 5 11 11 N 1.31516 * 120.00084 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 120.00040 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46921 * 90.00498 * 12 10 8 14 14 H 1.48500 * 109.47282 * 210.00352 * 12 10 8 15 15 H 1.48499 * 109.47239 * 330.00526 * 12 10 8 16 16 O 1.42901 * 109.47230 * 54.15886 * 6 5 2 17 17 C 1.42898 * 113.99952 * 94.99077 * 16 6 5 18 18 C 1.53007 * 109.46804 * 184.89429 * 17 16 6 19 19 C 1.50701 * 109.46795 * 180.02562 * 18 17 16 20 20 C 1.38240 * 119.99648 * 269.72560 * 19 18 17 21 21 C 1.38233 * 119.99882 * 179.77084 * 20 19 18 22 22 C 1.38238 * 119.99974 * 0.48004 * 21 20 19 23 23 C 1.38242 * 119.99747 * 359.79181 * 22 21 20 24 24 C 1.38229 * 120.00238 * 359.95653 * 23 22 21 25 25 H 1.08998 * 109.47637 * 290.89070 * 1 2 3 26 26 H 1.09000 * 109.46479 * 50.89058 * 1 2 3 27 27 H 1.08996 * 109.46937 * 170.88486 * 1 2 3 28 28 H 1.08993 * 109.47560 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46791 * 299.99761 * 3 2 1 30 30 H 1.09003 * 109.47491 * 59.99125 * 3 2 1 31 31 H 1.08993 * 109.46985 * 316.36132 * 4 2 1 32 32 H 1.09005 * 109.46799 * 76.36135 * 4 2 1 33 33 H 1.09001 * 109.46972 * 196.35930 * 4 2 1 34 34 H 1.09005 * 109.47053 * 294.14211 * 5 2 1 35 35 H 1.08998 * 109.47372 * 174.13833 * 5 2 1 36 36 H 0.97003 * 120.00063 * 179.97438 * 11 10 8 37 37 H 1.08995 * 109.46986 * 304.89111 * 17 16 6 38 38 H 1.08994 * 109.47391 * 64.89465 * 17 16 6 39 39 H 1.08995 * 109.47089 * 299.99619 * 18 17 16 40 40 H 1.08994 * 109.47117 * 59.99868 * 18 17 16 41 41 H 1.08001 * 119.99957 * 359.97438 * 20 19 18 42 42 H 1.08002 * 120.00320 * 180.25512 * 21 20 19 43 43 H 1.07999 * 119.99939 * 179.77200 * 22 21 20 44 44 H 1.08004 * 119.99497 * 179.97438 * 23 22 21 45 45 H 1.07998 * 120.00271 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3849 0.0000 4 6 1.9588 -0.6926 -1.1993 5 6 1.9586 -0.6924 1.1995 6 6 1.3319 -2.0861 1.2755 7 1 1.7724 -2.6379 2.1059 8 6 -0.1543 -1.9575 1.4899 9 1 -0.8412 -2.3036 0.7317 10 6 -0.6371 -1.4034 2.6564 11 7 0.1993 -0.9866 3.5818 12 14 -2.4792 -1.2434 2.9219 13 1 -2.9921 -2.4694 3.5846 14 1 -2.7549 -0.0641 3.7812 15 1 -3.1550 -1.0696 1.6111 16 8 1.5782 -2.7863 0.0543 17 6 2.7293 -3.6322 0.0914 18 6 2.9656 -4.2328 -1.2959 19 6 4.1792 -5.1254 -1.2566 20 6 5.4299 -4.6037 -1.5295 21 6 6.5437 -5.4214 -1.4889 22 6 6.4056 -6.7629 -1.1851 23 6 5.1542 -7.2857 -0.9178 24 6 4.0410 -6.4670 -0.9533 25 1 -0.3634 0.3664 0.9601 26 1 -0.3632 0.6483 -0.7974 27 1 -0.3633 -1.0147 -0.1628 28 1 3.0487 1.3850 0.0005 29 1 1.5954 1.8987 -0.8901 30 1 1.5953 1.8989 0.8899 31 1 1.3787 -1.6020 -1.3560 32 1 1.8514 -0.0394 -2.0654 33 1 3.0095 -0.9502 -1.0665 34 1 1.6834 -0.1215 2.0864 35 1 3.0436 -0.7842 1.1487 36 1 -0.1404 -0.5964 4.4024 37 1 3.6003 -3.0476 0.3874 38 1 2.5679 -4.4340 0.8118 39 1 2.0945 -4.8174 -1.5918 40 1 3.1269 -3.4310 -2.0163 41 1 5.5372 -3.5566 -1.7712 42 1 7.5214 -5.0130 -1.6980 43 1 7.2754 -7.4025 -1.1570 44 1 5.0463 -8.3339 -0.6809 45 1 3.0633 -6.8755 -0.7449 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204999827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:18 Heat of formation + Delta-G solvation = 83.010681 kcal Electronic energy + Delta-G solvation = -22803.300532 eV Core-core repulsion = 19711.459159 eV Total energy + Delta-G solvation = -3091.841373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.186 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.66531 -40.19844 -38.52075 -35.52683 -34.18917 -31.75746 -31.35758 -29.72150 -29.31506 -29.16626 -27.51831 -24.57338 -24.15259 -23.45740 -22.67448 -21.78625 -19.16416 -18.30314 -17.83822 -17.60572 -17.28956 -16.64857 -16.55055 -16.28277 -15.82829 -15.59972 -15.28551 -14.36057 -14.29553 -14.20704 -13.94633 -13.81215 -13.68546 -13.38170 -13.34945 -13.23714 -13.13997 -12.90753 -12.77291 -12.68539 -12.52826 -12.33269 -12.09734 -11.94201 -11.84584 -11.74309 -11.27088 -10.68580 -10.22603 -9.80818 -9.61486 -8.43756 -6.43879 0.43182 0.51110 1.22417 1.35158 1.48571 1.54893 2.23198 2.73745 2.89702 3.00643 3.19056 3.31265 3.36815 3.94090 4.00791 4.13690 4.13970 4.19156 4.24182 4.31543 4.35345 4.36131 4.40248 4.53349 4.55790 4.63036 4.65486 4.67934 4.72492 4.79250 4.87174 4.89994 4.98563 5.03253 5.08290 5.19846 5.24130 5.32311 5.35837 5.56803 5.59074 5.65412 5.72383 5.83683 6.14221 6.30828 6.69235 7.21056 8.60846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.240 5.240 3 C -0.044 4.044 4 C -0.046 4.046 5 C -0.003 4.003 6 C 0.199 3.801 7 H 0.024 0.976 8 C -0.524 4.524 9 H 0.080 0.920 10 C 0.049 3.951 11 N -0.901 5.901 12 Si 0.922 3.078 13 H -0.303 1.303 14 H -0.293 1.293 15 H -0.250 1.250 16 O -0.383 6.383 17 C 0.068 3.932 18 C -0.068 4.068 19 C -0.091 4.091 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.135 4.135 24 C -0.133 4.133 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.133 0.867 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.270 0.730 37 H 0.059 0.941 38 H 0.024 0.976 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 7.546 -12.224 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 N 0.103 4.897 3 C -0.185 4.185 4 C -0.186 4.186 5 C -0.126 4.126 6 C 0.142 3.858 7 H 0.042 0.958 8 C -0.562 4.562 9 H 0.098 0.902 10 C -0.154 4.154 11 N -0.539 5.539 12 Si 0.750 3.250 13 H -0.230 1.230 14 H -0.220 1.220 15 H -0.173 1.173 16 O -0.303 6.303 17 C -0.008 4.008 18 C -0.106 4.106 19 C -0.091 4.091 20 C -0.137 4.137 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.151 4.151 25 H 0.105 0.895 26 H 0.134 0.866 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.154 0.846 30 H 0.120 0.880 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.861 7.664 -12.205 16.416 hybrid contribution -0.984 -0.577 1.482 1.870 sum 6.877 7.087 -10.723 14.577 Atomic orbital electron populations 1.24618 0.76886 1.10016 1.06072 1.45513 1.15264 1.14449 1.14467 1.24190 1.05495 0.79986 1.08831 1.24483 1.05071 1.02617 0.86468 1.24149 1.00960 0.98857 0.88591 1.19811 0.95233 0.87127 0.83609 0.95790 1.21229 0.91394 1.40380 1.03170 0.90230 1.25057 0.99326 0.95687 0.95353 1.69783 1.35335 1.40585 1.08176 0.86099 0.82912 0.76764 0.79202 1.23032 1.21974 1.17334 1.87817 1.47153 1.60014 1.35301 1.22428 0.88472 0.93056 0.96859 1.20449 0.94933 0.98692 0.96490 1.19924 0.95397 0.94072 0.99705 1.21358 0.91565 1.00958 0.99827 1.21494 0.99821 0.93931 0.99554 1.21468 0.97809 0.96382 0.99872 1.21414 0.93111 1.00578 1.00154 1.21331 0.99184 0.94232 1.00400 0.89480 0.86648 0.84938 0.85653 0.84570 0.87985 0.85623 0.85292 0.87015 0.86054 0.86923 0.92031 0.92322 0.95784 0.90794 0.87825 0.83531 0.84356 0.85068 0.85393 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.37 6.59 127.69 0.84 1.21 16 2 N -0.24 3.85 0.05 ******* -0.07 3.78 16 3 C -0.04 1.00 7.93 127.69 1.01 2.01 16 4 C -0.05 0.91 7.20 127.69 0.92 1.83 16 5 C 0.00 0.02 4.20 86.30 0.36 0.38 16 6 C 0.20 0.70 2.24 29.85 0.07 0.77 16 7 H 0.02 0.29 7.76 -2.39 -0.02 0.27 16 8 C -0.52 -5.28 5.18 25.60 0.13 -5.15 16 9 H 0.08 0.85 6.75 -2.91 -0.02 0.83 16 10 C 0.05 0.74 4.14 84.65 0.35 1.09 16 11 N -0.90 -16.54 11.67 21.45 0.25 -16.29 16 12 Si 0.92 14.32 29.54 68.60 2.03 16.35 16 13 H -0.30 -6.39 7.11 99.48 0.71 -5.68 16 14 H -0.29 -5.24 7.11 99.48 0.71 -4.53 16 15 H -0.25 -3.11 7.11 99.48 0.71 -2.40 16 16 O -0.38 0.64 5.90 -148.98 -0.88 -0.24 16 17 C 0.07 -0.17 5.70 71.98 0.41 0.24 16 18 C -0.07 0.35 5.72 29.85 0.17 0.52 16 19 C -0.09 0.12 5.13 -19.86 -0.10 0.02 16 20 C -0.12 0.37 9.70 22.27 0.22 0.59 16 21 C -0.13 0.18 10.05 22.27 0.22 0.41 16 22 C -0.14 -0.09 10.05 22.27 0.22 0.13 16 23 C -0.13 -0.26 10.05 22.27 0.22 -0.04 16 24 C -0.13 -0.24 9.70 22.27 0.22 -0.03 16 25 H 0.09 -0.38 6.53 -2.39 -0.02 -0.39 16 26 H 0.12 -2.10 8.01 -2.39 -0.02 -2.12 16 27 H 0.13 -0.68 4.23 -2.39 -0.01 -0.69 16 28 H 0.12 -3.23 8.14 -2.39 -0.02 -3.25 16 29 H 0.14 -3.76 7.96 -2.38 -0.02 -3.78 16 30 H 0.10 -1.99 8.11 -2.39 -0.02 -2.01 16 31 H 0.13 -1.84 5.20 -2.39 -0.01 -1.85 16 32 H 0.13 -3.37 7.86 -2.38 -0.02 -3.39 16 33 H 0.11 -2.44 7.77 -2.39 -0.02 -2.45 16 34 H 0.12 -0.01 6.28 -2.38 -0.01 -0.02 16 35 H 0.11 -1.30 7.88 -2.39 -0.02 -1.32 16 36 H 0.27 5.46 8.31 -92.71 -0.77 4.69 16 37 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.02 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.07 -0.21 8.08 -2.39 -0.02 -0.23 16 40 H 0.10 -1.11 8.08 -2.39 -0.02 -1.13 16 41 H 0.15 -1.34 8.06 -2.91 -0.02 -1.37 16 42 H 0.14 -0.75 8.06 -2.91 -0.02 -0.77 16 43 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 44 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 45 H 0.12 0.10 8.06 -2.91 -0.02 0.08 16 Total: 0.00 -32.16 345.57 7.53 -24.63 By element: Atomic # 1 Polarization: -33.15 SS G_CDS: 0.93 Total: -32.22 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.27 Total: 3.99 kcal Atomic # 7 Polarization: -12.70 SS G_CDS: 0.18 Total: -12.51 kcal Atomic # 8 Polarization: 0.64 SS G_CDS: -0.88 Total: -0.24 kcal Atomic # 14 Polarization: 14.32 SS G_CDS: 2.03 Total: 16.35 kcal Total: -32.16 7.53 -24.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204999827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.638 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds