Wall clock time and date at job start Tue Mar 31 2020 00:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47118 * 2 1 4 4 O 1.42898 * 109.47053 * 239.99900 * 2 1 3 5 5 C 1.42904 * 113.99883 * 90.00162 * 4 2 1 6 6 H 1.09001 * 109.46845 * 29.99895 * 5 4 2 7 7 C 1.50699 * 109.47421 * 270.00080 * 5 4 2 8 8 H 1.07995 * 120.00256 * 119.99425 * 7 5 4 9 9 C 1.37882 * 119.99707 * 300.00255 * 7 5 4 10 10 N 1.31507 * 120.00282 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99607 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47434 * 59.99826 * 11 9 7 13 13 H 1.48502 * 109.47006 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46943 * 299.99491 * 11 9 7 15 15 C 1.53003 * 109.47004 * 149.99929 * 5 4 2 16 16 N 1.46901 * 109.47187 * 293.19822 * 15 5 4 17 17 C 1.46903 * 109.46904 * 64.54531 * 16 15 5 18 18 C 1.46900 * 109.47057 * 184.54520 * 16 15 5 19 19 C 1.46901 * 109.47096 * 304.54894 * 16 15 5 20 20 C 1.50697 * 109.46786 * 120.00260 * 2 1 3 21 21 C 1.38240 * 120.00295 * 84.72661 * 20 2 1 22 22 C 1.38233 * 119.99974 * 179.78233 * 21 20 2 23 23 C 1.38232 * 120.00168 * 0.44576 * 22 21 20 24 24 C 1.38229 * 120.00066 * 359.80791 * 23 22 21 25 25 C 1.38235 * 120.00035 * 264.99693 * 20 2 1 26 26 H 1.08996 * 109.47448 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47582 * 300.00049 * 1 2 3 28 28 H 1.09006 * 109.47112 * 59.99646 * 1 2 3 29 29 H 0.96998 * 120.00173 * 180.02562 * 10 9 7 30 30 H 1.08999 * 109.46783 * 53.20387 * 15 5 4 31 31 H 1.08998 * 109.46867 * 173.19978 * 15 5 4 32 32 H 1.09003 * 109.46509 * 50.72681 * 17 16 15 33 33 H 1.09000 * 109.46852 * 170.72114 * 17 16 15 34 34 H 1.08996 * 109.47503 * 290.72815 * 17 16 15 35 35 H 1.09003 * 109.47180 * 60.00509 * 18 16 15 36 36 H 1.08999 * 109.46993 * 179.97438 * 18 16 15 37 37 H 1.09000 * 109.47357 * 300.00707 * 18 16 15 38 38 H 1.08993 * 109.47133 * 59.99924 * 19 16 15 39 39 H 1.08997 * 109.46539 * 180.02562 * 19 16 15 40 40 H 1.08997 * 109.46848 * 299.99742 * 19 16 15 41 41 H 1.08006 * 119.99273 * 0.02562 * 21 20 2 42 42 H 1.08004 * 119.99845 * 180.27077 * 22 21 20 43 43 H 1.07998 * 119.99913 * 179.83103 * 23 22 21 44 44 H 1.08005 * 120.00436 * 180.02562 * 24 23 22 45 45 H 1.08002 * 119.99865 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2000 0.1829 -2.2941 6 1 2.4627 1.1831 -1.9494 7 6 0.9286 0.2474 -3.1005 8 1 0.4331 1.1948 -3.2528 9 6 0.3979 -0.9034 -3.6439 10 7 1.0014 -2.0571 -3.4588 11 14 -1.1785 -0.8236 -4.6429 12 1 -0.9777 0.0667 -5.8143 13 1 -1.5361 -2.1862 -5.1130 14 1 -2.2746 -0.2881 -3.7962 15 6 3.3296 -0.3692 -3.1659 16 7 4.6007 -0.2803 -2.4348 17 6 4.5477 -1.1515 -1.2532 18 6 5.7000 -0.7085 -3.3101 19 6 4.8252 1.1079 -2.0100 20 6 2.0322 -0.7105 1.2304 21 6 2.1588 -2.0871 1.2305 22 6 2.6238 -2.7383 2.3577 23 6 2.9534 -2.0139 3.4879 24 6 2.8218 -0.6379 3.4897 25 6 2.3610 0.0139 2.3610 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.6282 -2.8665 -3.8413 30 1 3.1233 -1.4111 -3.4109 31 1 3.3974 0.2135 -4.0846 32 1 4.2195 -2.1475 -1.5506 33 1 5.5388 -1.2147 -0.8038 34 1 3.8458 -0.7389 -0.5286 35 1 5.7393 -0.0621 -4.1868 36 1 6.6431 -0.6422 -2.7677 37 1 5.5333 -1.7386 -3.6254 38 1 4.0095 1.4255 -1.3606 39 1 5.7685 1.1738 -1.4679 40 1 4.8644 1.7542 -2.8867 41 1 1.8982 -2.6533 0.3485 42 1 2.7269 -3.8134 2.3562 43 1 3.3141 -2.5230 4.3694 44 1 3.0797 -0.0718 4.3726 45 1 2.2583 1.0890 2.3623 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223447600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:44 Heat of formation + Delta-G solvation = 81.759978 kcal Electronic energy + Delta-G solvation = -23742.474546 eV Core-core repulsion = 20650.578938 eV Total energy + Delta-G solvation = -3091.895608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.186 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.20961 -40.30806 -38.31835 -34.80879 -33.11026 -31.74033 -31.08810 -30.32240 -30.23688 -29.54964 -27.63918 -24.86830 -24.46706 -23.47561 -22.40292 -21.53569 -18.94553 -18.53302 -18.30812 -17.89489 -17.66317 -16.67812 -16.18915 -16.03085 -15.37232 -15.26063 -15.06535 -14.74550 -14.65953 -14.19872 -14.18040 -14.05632 -13.90247 -13.73869 -13.50476 -13.48270 -13.30600 -13.16732 -12.68494 -12.54145 -12.17523 -12.08342 -12.01510 -11.83367 -11.40888 -11.26455 -10.98099 -10.06360 -9.84080 -9.74748 -9.48201 -7.64242 -5.82362 0.41090 0.48310 0.57692 2.16403 2.27597 2.32690 2.38064 2.42246 2.46915 2.91298 3.05436 3.11811 3.19628 3.27891 3.47337 3.61202 3.72967 3.76526 3.79295 3.81696 3.94360 4.00574 4.07211 4.19220 4.26713 4.34647 4.38961 4.41015 4.48263 4.62372 4.73406 4.81877 4.83589 5.11704 5.21003 5.26422 5.31555 5.50241 5.65801 5.72960 5.78616 5.93852 6.17418 6.29401 6.37006 6.82492 7.32150 7.99237 9.38767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 H 0.051 0.949 4 O -0.363 6.363 5 C 0.201 3.799 6 H 0.031 0.969 7 C -0.563 4.563 8 H 0.071 0.929 9 C 0.095 3.905 10 N -0.861 5.861 11 Si 0.895 3.105 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.270 1.270 15 C -0.004 4.004 16 N -0.270 5.270 17 C -0.041 4.041 18 C -0.041 4.041 19 C -0.045 4.045 20 C -0.088 4.088 21 C -0.094 4.094 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.119 4.119 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.275 0.725 30 H 0.156 0.844 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.412 3.559 3.036 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.078 3.922 3 H 0.069 0.931 4 O -0.283 6.283 5 C 0.145 3.855 6 H 0.049 0.951 7 C -0.600 4.600 8 H 0.089 0.911 9 C -0.114 4.114 10 N -0.495 5.495 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.194 1.194 15 C -0.123 4.123 16 N 0.071 4.929 17 C -0.182 4.182 18 C -0.183 4.183 19 C -0.187 4.187 20 C -0.088 4.088 21 C -0.112 4.112 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.137 4.137 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.174 0.826 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.111 0.889 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.440 3.146 2.972 16.035 hybrid contribution -1.058 0.095 -0.480 1.166 sum 14.382 3.241 2.492 14.952 Atomic orbital electron populations 1.22189 0.94659 1.03011 1.01956 1.20631 0.94795 0.93125 0.83631 0.93066 1.88050 1.84956 1.36381 1.18944 1.20012 0.92940 0.87523 0.85045 0.95139 1.21161 1.08431 0.95152 1.35236 0.91108 1.24922 0.97394 0.94899 0.94200 1.69620 1.39548 0.98791 1.41559 0.86550 0.82749 0.78197 0.80403 1.19652 1.20568 1.19448 1.24968 0.77989 1.11840 0.97466 1.46382 1.16666 1.14014 1.15799 1.24371 1.06554 0.98620 0.88649 1.23987 0.90619 1.06246 0.97417 1.24025 1.07035 0.81622 1.06014 1.20048 0.99242 0.94374 0.95129 1.21159 0.97562 0.94026 0.98431 1.21249 0.99576 0.99977 0.93428 1.21188 1.00308 0.94301 0.98314 1.21100 1.00181 0.94705 0.98085 1.20985 0.99916 0.99712 0.93097 0.92143 0.93533 0.90203 0.91488 0.82603 0.86710 0.86328 0.88873 0.84493 0.86984 0.87437 0.86614 0.86386 0.87444 0.86804 0.84870 0.86195 0.86328 0.86212 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.30 37.16 0.35 -0.31 16 2 C 0.14 0.16 2.58 -27.89 -0.07 0.09 16 3 H 0.05 -0.02 7.28 -51.93 -0.38 -0.40 16 4 O -0.36 -0.49 5.37 -35.23 -0.19 -0.68 16 5 C 0.20 0.15 1.85 -27.88 -0.05 0.10 16 6 H 0.03 -0.04 5.06 -51.93 -0.26 -0.30 16 7 C -0.56 -3.66 7.39 -34.44 -0.25 -3.91 16 8 H 0.07 0.56 7.81 -52.49 -0.41 0.15 16 9 C 0.10 0.81 5.24 -17.82 -0.09 0.72 16 10 N -0.86 -7.29 10.95 55.43 0.61 -6.68 16 11 Si 0.89 8.22 29.54 -169.99 -5.02 3.20 16 12 H -0.27 -2.59 7.11 56.52 0.40 -2.19 16 13 H -0.28 -2.90 7.11 56.52 0.40 -2.50 16 14 H -0.27 -2.79 7.11 56.52 0.40 -2.39 16 15 C 0.00 0.01 3.52 -3.82 -0.01 0.00 16 16 N -0.27 2.43 0.05 -395.62 -0.02 2.41 16 17 C -0.04 0.31 7.17 60.07 0.43 0.74 16 18 C -0.04 0.47 8.00 60.06 0.48 0.95 16 19 C -0.04 0.47 7.54 60.07 0.45 0.92 16 20 C -0.09 -0.05 4.04 -104.62 -0.42 -0.47 16 21 C -0.09 -0.11 9.12 -39.58 -0.36 -0.47 16 22 C -0.12 -0.06 10.05 -39.59 -0.40 -0.45 16 23 C -0.12 -0.01 10.05 -39.59 -0.40 -0.41 16 24 C -0.12 0.02 10.05 -39.58 -0.40 -0.38 16 25 C -0.12 0.02 9.68 -39.58 -0.38 -0.37 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.08 0.47 6.82 -51.93 -0.35 0.12 16 29 H 0.27 2.61 8.31 -40.82 -0.34 2.27 16 30 H 0.16 -0.05 6.12 -51.93 -0.32 -0.37 16 31 H 0.11 -0.46 8.09 -51.93 -0.42 -0.88 16 32 H 0.12 -0.71 7.94 -51.93 -0.41 -1.12 16 33 H 0.09 -0.95 8.01 -51.93 -0.42 -1.37 16 34 H 0.14 -0.72 3.97 -51.93 -0.21 -0.92 16 35 H 0.11 -1.37 8.12 -51.93 -0.42 -1.79 16 36 H 0.11 -1.44 8.07 -51.93 -0.42 -1.86 16 37 H 0.12 -1.26 8.14 -51.93 -0.42 -1.68 16 38 H 0.12 -1.04 5.86 -51.93 -0.30 -1.34 16 39 H 0.11 -1.35 8.14 -51.93 -0.42 -1.78 16 40 H 0.11 -1.29 8.14 -51.93 -0.42 -1.72 16 41 H 0.13 0.31 7.64 -52.48 -0.40 -0.09 16 42 H 0.12 -0.09 8.06 -52.48 -0.42 -0.51 16 43 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 44 H 0.12 -0.20 8.06 -52.48 -0.42 -0.63 16 45 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 LS Contribution 344.84 15.07 5.20 5.20 Total: 0.00 -14.39 344.84 -8.22 -22.62 By element: Atomic # 1 Polarization: -15.15 SS G_CDS: -7.66 Total: -22.82 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.14 Total: -3.24 kcal Atomic # 7 Polarization: -4.86 SS G_CDS: 0.59 Total: -4.27 kcal Atomic # 8 Polarization: -0.49 SS G_CDS: -0.19 Total: -0.68 kcal Atomic # 14 Polarization: 8.22 SS G_CDS: -5.02 Total: 3.20 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -14.39 -8.22 -22.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223447600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.377 kcal (2) G-P(sol) polarization free energy of solvation -14.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds