Wall clock time and date at job start Tue Mar 31 2020 00:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 109.46617 * 2 1 4 4 C 1.46898 * 109.47294 * 240.00481 * 2 1 3 5 5 C 1.46896 * 109.47044 * 120.00074 * 2 1 3 6 6 C 1.53002 * 109.47085 * 60.00334 * 5 2 1 7 7 C 1.53001 * 109.46936 * 179.97438 * 6 5 2 8 8 O 1.42900 * 109.46792 * 179.97438 * 7 6 5 9 9 C 1.42902 * 113.99860 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.47147 * 330.00618 * 9 8 7 11 11 C 1.50709 * 109.46951 * 90.00250 * 9 8 7 12 12 H 1.08003 * 119.99566 * 56.07860 * 11 9 8 13 13 C 1.37866 * 120.00188 * 236.08351 * 11 9 8 14 14 N 1.31517 * 120.00136 * 174.56078 * 13 11 9 15 15 Si 1.86806 * 119.99963 * 354.55266 * 13 11 9 16 16 H 1.48505 * 109.46842 * 85.22990 * 15 13 11 17 17 H 1.48506 * 109.47041 * 205.22408 * 15 13 11 18 18 H 1.48493 * 109.47165 * 325.22982 * 15 13 11 19 19 C 1.50700 * 109.47339 * 209.99958 * 9 8 7 20 20 C 1.38230 * 119.99868 * 322.41209 * 19 9 8 21 21 C 1.38244 * 119.99495 * 179.80644 * 20 19 9 22 22 C 1.38230 * 120.00318 * 0.40130 * 21 20 19 23 23 C 1.38241 * 119.99813 * 359.85244 * 22 21 20 24 24 C 1.38233 * 119.99723 * 142.68480 * 19 9 8 25 25 H 1.08998 * 109.47469 * 299.99661 * 1 2 3 26 26 H 1.09008 * 109.47194 * 59.99974 * 1 2 3 27 27 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46705 * 179.97438 * 3 2 1 29 29 H 1.08991 * 109.47488 * 299.99840 * 3 2 1 30 30 H 1.09007 * 109.47054 * 60.00594 * 3 2 1 31 31 H 1.09000 * 109.46987 * 300.00079 * 4 2 1 32 32 H 1.09002 * 109.46962 * 59.99576 * 4 2 1 33 33 H 1.08994 * 109.47356 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47204 * 300.00427 * 5 2 1 35 35 H 1.09004 * 109.47132 * 180.02562 * 5 2 1 36 36 H 1.08998 * 109.47024 * 59.99982 * 6 5 2 37 37 H 1.09004 * 109.46916 * 299.99864 * 6 5 2 38 38 H 1.08998 * 109.47020 * 60.00297 * 7 6 5 39 39 H 1.08994 * 109.47399 * 299.99688 * 7 6 5 40 40 H 0.97006 * 120.00030 * 179.97438 * 14 13 11 41 41 H 1.08002 * 120.00696 * 359.97438 * 20 19 9 42 42 H 1.08007 * 119.99539 * 180.23162 * 21 20 19 43 43 H 1.07997 * 120.00300 * 179.83829 * 22 21 20 44 44 H 1.07997 * 119.99910 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.00286 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6924 -1.1995 5 6 1.9586 -0.6925 1.1994 6 6 1.4487 -2.1350 1.1993 7 6 1.9592 -2.8565 2.4483 8 8 1.4824 -4.2036 2.4485 9 6 1.9050 -4.9695 3.5785 10 1 2.8737 -4.6066 3.9216 11 6 0.8942 -4.8283 4.6874 12 1 -0.1411 -5.0795 4.5095 13 6 1.2910 -4.3786 5.9287 14 7 0.3943 -4.1533 6.8641 15 14 3.1023 -4.0893 6.2823 16 1 3.4836 -2.7272 5.8297 17 1 3.3477 -4.2128 7.7417 18 1 3.9155 -5.0978 5.5565 19 6 2.0218 -6.4200 3.1869 20 6 1.1064 -6.9758 2.3128 21 6 1.2160 -8.3054 1.9506 22 6 2.2359 -9.0813 2.4689 23 6 3.1482 -8.5268 3.3471 24 6 3.0409 -7.1962 3.7063 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0486 1.3851 0.0005 29 1 1.5953 1.8988 -0.8899 30 1 1.5952 1.8988 0.8901 31 1 1.5954 -1.7200 -1.1995 32 1 1.5953 -0.1785 -2.0894 33 1 3.0486 -0.6928 -1.1992 34 1 1.5952 -0.1787 2.0894 35 1 3.0487 -0.6921 1.1996 36 1 1.8121 -2.6488 0.3093 37 1 0.3587 -2.1350 1.1993 38 1 1.5962 -2.3428 3.3384 39 1 3.0492 -2.8565 2.4478 40 1 0.6735 -3.8372 7.7376 41 1 0.3073 -6.3707 1.9108 42 1 0.5030 -8.7387 1.2647 43 1 2.3199 -10.1207 2.1879 44 1 3.9448 -9.1330 3.7524 45 1 3.7537 -6.7629 4.3923 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224621986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:14 Heat of formation + Delta-G solvation = 91.249113 kcal Electronic energy + Delta-G solvation = -22089.506946 eV Core-core repulsion = 18998.022819 eV Total energy + Delta-G solvation = -3091.484128 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.186 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.15221 -39.62035 -38.09802 -35.00427 -33.56839 -31.92790 -31.15743 -31.11584 -31.03855 -28.86652 -27.89434 -25.31841 -23.73602 -23.08114 -22.59571 -21.09173 -19.54941 -19.39565 -18.97665 -18.21857 -17.28051 -17.16535 -16.75976 -15.80709 -15.69220 -15.52384 -15.30660 -15.01276 -14.86375 -14.81256 -14.65225 -14.59042 -14.54591 -14.34433 -13.82877 -13.69956 -13.49030 -13.25718 -12.89489 -12.72249 -12.36682 -11.98332 -11.77905 -11.54088 -11.25246 -10.74527 -10.49731 -9.74400 -9.67928 -9.07824 -8.71825 -7.21001 -5.26692 -0.59699 1.22626 1.26358 1.38877 1.48044 1.49021 2.15135 2.30044 2.40165 2.41610 2.46542 2.60020 2.69443 2.74867 2.88957 2.93840 2.97213 3.11590 3.14181 3.24110 3.27359 3.29998 3.39721 3.68693 3.72251 4.07359 4.19353 4.21163 4.64965 4.72984 4.74612 4.90061 4.92930 5.09601 5.27426 5.44400 5.52932 5.84298 5.90088 6.31364 6.34305 6.38097 6.51065 6.86474 6.99106 7.40403 7.91025 8.37199 9.90509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.270 5.270 3 C -0.043 4.043 4 C -0.050 4.050 5 C -0.008 4.008 6 C -0.147 4.147 7 C 0.073 3.927 8 O -0.392 6.392 9 C 0.219 3.781 10 H 0.034 0.966 11 C -0.531 4.531 12 H 0.083 0.917 13 C 0.081 3.919 14 N -0.871 5.871 15 Si 0.865 3.135 16 H -0.276 1.276 17 H -0.277 1.277 18 H -0.260 1.260 19 C -0.040 4.040 20 C -0.103 4.103 21 C -0.126 4.126 22 C -0.142 4.142 23 C -0.121 4.121 24 C -0.128 4.128 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.273 0.727 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 22.053 -25.061 33.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 N 0.072 4.928 3 C -0.184 4.184 4 C -0.191 4.191 5 C -0.128 4.128 6 C -0.185 4.185 7 C -0.006 4.006 8 O -0.312 6.312 9 C 0.164 3.836 10 H 0.052 0.948 11 C -0.568 4.568 12 H 0.101 0.899 13 C -0.125 4.125 14 N -0.507 5.507 15 Si 0.692 3.308 16 H -0.202 1.202 17 H -0.202 1.202 18 H -0.185 1.185 19 C -0.040 4.040 20 C -0.121 4.121 21 C -0.144 4.144 22 C -0.160 4.160 23 C -0.139 4.139 24 C -0.147 4.147 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.146 0.854 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.132 22.040 -24.986 33.464 hybrid contribution 1.023 0.180 0.801 1.312 sum 4.155 22.220 -24.185 33.104 Atomic orbital electron populations 1.24261 0.76010 1.09960 1.08966 1.46015 1.15774 1.15228 1.15751 1.24142 1.05468 0.79743 1.09065 1.24232 1.05509 1.02734 0.86669 1.24014 1.04648 0.97170 0.86995 1.22099 1.03618 0.90262 1.02473 1.21876 0.96673 0.87017 0.95008 1.87809 1.75462 1.19878 1.48057 1.19064 0.95210 0.84825 0.84474 0.94844 1.21226 0.96456 1.45202 0.93927 0.89903 1.25128 0.97321 0.93957 0.96093 1.69858 1.33785 1.42309 1.04718 0.87103 0.85777 0.78735 0.79208 1.20196 1.20233 1.18498 1.20087 0.93256 0.96740 0.93963 1.20866 0.98825 0.94486 0.97963 1.21091 0.98289 0.94436 1.00584 1.20977 0.96343 0.99352 0.99298 1.21004 0.99358 0.95072 0.98457 1.20999 0.98747 0.94316 1.00593 0.85927 0.86289 0.85431 0.86228 0.86224 0.86094 0.85524 0.86274 0.86158 0.85043 0.85401 0.89309 0.88714 0.92204 0.94331 0.91653 0.86272 0.86882 0.86892 0.86740 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.92 7.67 60.06 0.46 1.38 16 2 N -0.27 5.02 0.05 -395.62 -0.02 5.00 16 3 C -0.04 0.85 8.03 60.07 0.48 1.33 16 4 C -0.05 0.94 7.67 60.06 0.46 1.40 16 5 C -0.01 0.12 3.96 -3.83 -0.02 0.10 16 6 C -0.15 1.32 4.75 -26.73 -0.13 1.19 16 7 C 0.07 -0.03 5.74 37.16 0.21 0.18 16 8 O -0.39 -2.38 9.21 -35.23 -0.32 -2.70 16 9 C 0.22 2.29 2.26 -29.03 -0.07 2.23 16 10 H 0.03 0.34 4.33 -51.93 -0.22 0.12 16 11 C -0.53 -8.10 9.17 -34.44 -0.32 -8.41 16 12 H 0.08 1.55 8.06 -52.48 -0.42 1.13 16 13 C 0.08 1.32 5.47 -17.82 -0.10 1.22 16 14 N -0.87 -16.32 13.96 55.43 0.77 -15.54 16 15 Si 0.87 10.71 26.95 -169.99 -4.58 6.13 16 16 H -0.28 -2.84 7.11 56.52 0.40 -2.44 16 17 H -0.28 -3.78 7.11 56.52 0.40 -3.38 16 18 H -0.26 -2.96 5.42 56.52 0.31 -2.65 16 19 C -0.04 -0.42 4.97 -104.63 -0.52 -0.94 16 20 C -0.10 -0.93 9.36 -39.58 -0.37 -1.30 16 21 C -0.13 -0.93 10.05 -39.58 -0.40 -1.32 16 22 C -0.14 -1.02 10.05 -39.58 -0.40 -1.41 16 23 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 24 C -0.13 -1.28 9.67 -39.58 -0.38 -1.66 16 25 H 0.12 -2.19 8.14 -51.93 -0.42 -2.61 16 26 H 0.12 -2.33 8.14 -51.92 -0.42 -2.75 16 27 H 0.13 -2.13 6.15 -51.93 -0.32 -2.45 16 28 H 0.12 -2.38 8.14 -51.93 -0.42 -2.80 16 29 H 0.12 -2.47 8.14 -51.93 -0.42 -2.90 16 30 H 0.12 -2.37 8.14 -51.92 -0.42 -2.79 16 31 H 0.13 -2.20 6.15 -51.93 -0.32 -2.52 16 32 H 0.12 -2.38 8.14 -51.93 -0.42 -2.80 16 33 H 0.12 -2.28 8.14 -51.93 -0.42 -2.70 16 34 H 0.13 -1.94 8.14 -51.93 -0.42 -2.37 16 35 H 0.13 -2.00 8.14 -51.93 -0.42 -2.43 16 36 H 0.09 -0.90 6.28 -51.93 -0.33 -1.22 16 37 H 0.09 -0.85 6.28 -51.93 -0.33 -1.18 16 38 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.04 -0.05 8.08 -51.93 -0.42 -0.47 16 40 H 0.27 4.73 8.31 -40.82 -0.34 4.39 16 41 H 0.12 0.97 7.71 -52.49 -0.40 0.57 16 42 H 0.11 0.54 8.06 -52.48 -0.42 0.12 16 43 H 0.11 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.12 1.13 6.69 -52.48 -0.35 0.78 16 LS Contribution 352.28 15.07 5.31 5.31 Total: 0.00 -34.37 352.28 -8.15 -42.53 By element: Atomic # 1 Polarization: -25.51 SS G_CDS: -7.84 Total: -33.35 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.47 Total: -7.37 kcal Atomic # 7 Polarization: -11.29 SS G_CDS: 0.75 Total: -10.54 kcal Atomic # 8 Polarization: -2.38 SS G_CDS: -0.32 Total: -2.70 kcal Atomic # 14 Polarization: 10.71 SS G_CDS: -4.58 Total: 6.13 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.37 -8.15 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224621986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.778 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds