Wall clock time and date at job start Tue Mar 31 2020 00:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 109.46617 * 2 1 4 4 C 1.46898 * 109.47294 * 240.00481 * 2 1 3 5 5 C 1.46896 * 109.47044 * 120.00074 * 2 1 3 6 6 C 1.53002 * 109.47085 * 60.00334 * 5 2 1 7 7 C 1.53001 * 109.46936 * 179.97438 * 6 5 2 8 8 O 1.42900 * 109.46792 * 179.97438 * 7 6 5 9 9 C 1.42902 * 113.99860 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.47147 * 330.00618 * 9 8 7 11 11 C 1.50709 * 109.46951 * 90.00250 * 9 8 7 12 12 H 1.08003 * 119.99566 * 56.07860 * 11 9 8 13 13 C 1.37866 * 120.00188 * 236.08351 * 11 9 8 14 14 N 1.31517 * 120.00136 * 174.56078 * 13 11 9 15 15 Si 1.86806 * 119.99963 * 354.55266 * 13 11 9 16 16 H 1.48505 * 109.46842 * 85.22990 * 15 13 11 17 17 H 1.48506 * 109.47041 * 205.22408 * 15 13 11 18 18 H 1.48493 * 109.47165 * 325.22982 * 15 13 11 19 19 C 1.50700 * 109.47339 * 209.99958 * 9 8 7 20 20 C 1.38230 * 119.99868 * 322.41209 * 19 9 8 21 21 C 1.38244 * 119.99495 * 179.80644 * 20 19 9 22 22 C 1.38230 * 120.00318 * 0.40130 * 21 20 19 23 23 C 1.38241 * 119.99813 * 359.85244 * 22 21 20 24 24 C 1.38233 * 119.99723 * 142.68480 * 19 9 8 25 25 H 1.08998 * 109.47469 * 299.99661 * 1 2 3 26 26 H 1.09008 * 109.47194 * 59.99974 * 1 2 3 27 27 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46705 * 179.97438 * 3 2 1 29 29 H 1.08991 * 109.47488 * 299.99840 * 3 2 1 30 30 H 1.09007 * 109.47054 * 60.00594 * 3 2 1 31 31 H 1.09000 * 109.46987 * 300.00079 * 4 2 1 32 32 H 1.09002 * 109.46962 * 59.99576 * 4 2 1 33 33 H 1.08994 * 109.47356 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47204 * 300.00427 * 5 2 1 35 35 H 1.09004 * 109.47132 * 180.02562 * 5 2 1 36 36 H 1.08998 * 109.47024 * 59.99982 * 6 5 2 37 37 H 1.09004 * 109.46916 * 299.99864 * 6 5 2 38 38 H 1.08998 * 109.47020 * 60.00297 * 7 6 5 39 39 H 1.08994 * 109.47399 * 299.99688 * 7 6 5 40 40 H 0.97006 * 120.00030 * 179.97438 * 14 13 11 41 41 H 1.08002 * 120.00696 * 359.97438 * 20 19 9 42 42 H 1.08007 * 119.99539 * 180.23162 * 21 20 19 43 43 H 1.07997 * 120.00300 * 179.83829 * 22 21 20 44 44 H 1.07997 * 119.99910 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.00286 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6924 -1.1995 5 6 1.9586 -0.6925 1.1994 6 6 1.4487 -2.1350 1.1993 7 6 1.9592 -2.8565 2.4483 8 8 1.4824 -4.2036 2.4485 9 6 1.9050 -4.9695 3.5785 10 1 2.8737 -4.6066 3.9216 11 6 0.8942 -4.8283 4.6874 12 1 -0.1411 -5.0795 4.5095 13 6 1.2910 -4.3786 5.9287 14 7 0.3943 -4.1533 6.8641 15 14 3.1023 -4.0893 6.2823 16 1 3.4836 -2.7272 5.8297 17 1 3.3477 -4.2128 7.7417 18 1 3.9155 -5.0978 5.5565 19 6 2.0218 -6.4200 3.1869 20 6 1.1064 -6.9758 2.3128 21 6 1.2160 -8.3054 1.9506 22 6 2.2359 -9.0813 2.4689 23 6 3.1482 -8.5268 3.3471 24 6 3.0409 -7.1962 3.7063 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0486 1.3851 0.0005 29 1 1.5953 1.8988 -0.8899 30 1 1.5952 1.8988 0.8901 31 1 1.5954 -1.7200 -1.1995 32 1 1.5953 -0.1785 -2.0894 33 1 3.0486 -0.6928 -1.1992 34 1 1.5952 -0.1787 2.0894 35 1 3.0487 -0.6921 1.1996 36 1 1.8121 -2.6488 0.3093 37 1 0.3587 -2.1350 1.1993 38 1 1.5962 -2.3428 3.3384 39 1 3.0492 -2.8565 2.4478 40 1 0.6735 -3.8372 7.7376 41 1 0.3073 -6.3707 1.9108 42 1 0.5030 -8.7387 1.2647 43 1 2.3199 -10.1207 2.1879 44 1 3.9448 -9.1330 3.7524 45 1 3.7537 -6.7629 4.3923 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224621986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:14 Heat of formation + Delta-G solvation = 71.416157 kcal Electronic energy + Delta-G solvation = -22090.366968 eV Core-core repulsion = 18998.022819 eV Total energy + Delta-G solvation = -3092.344149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.186 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.76487 -40.25342 -38.49503 -35.16192 -34.07406 -32.44992 -31.67113 -29.64631 -29.62712 -29.11006 -27.80756 -24.88396 -24.13750 -23.30523 -22.24424 -21.74678 -19.32703 -18.41005 -17.96116 -17.88225 -17.51033 -17.15590 -16.82411 -16.29315 -16.07312 -15.21523 -14.96563 -14.83908 -14.71651 -14.27742 -14.17725 -13.86737 -13.58392 -13.48564 -13.37901 -13.30438 -13.18791 -13.13229 -13.06909 -12.85635 -12.79291 -12.45670 -12.08112 -12.04742 -11.84111 -11.72756 -11.30209 -10.88393 -10.27278 -9.72934 -9.44441 -8.44868 -6.54364 0.56638 0.60956 0.80105 1.15847 1.28781 1.36876 2.17435 2.51015 2.83834 2.89484 2.94398 3.07172 3.22283 3.69374 3.70252 3.98663 4.08873 4.13803 4.17511 4.22369 4.24262 4.28900 4.31837 4.33454 4.36537 4.41524 4.46671 4.50500 4.56749 4.68091 4.75189 4.78696 4.80538 4.82109 4.88208 4.97638 5.10801 5.19403 5.26735 5.34550 5.67418 5.70074 5.83894 6.04463 6.22936 6.47390 6.67359 7.16337 8.70819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.254 5.254 3 C -0.045 4.045 4 C -0.055 4.055 5 C 0.004 3.996 6 C -0.137 4.137 7 C 0.052 3.948 8 O -0.401 6.401 9 C 0.232 3.768 10 H 0.037 0.963 11 C -0.528 4.528 12 H 0.030 0.970 13 C 0.027 3.973 14 N -0.933 5.933 15 Si 0.921 3.079 16 H -0.239 1.239 17 H -0.295 1.295 18 H -0.243 1.243 19 C -0.069 4.069 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.140 4.140 23 C -0.125 4.125 24 C -0.149 4.149 25 H 0.119 0.881 26 H 0.140 0.860 27 H 0.110 0.890 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.033 0.967 39 H 0.052 0.948 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.359 22.858 -27.934 36.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 N 0.088 4.912 3 C -0.185 4.185 4 C -0.196 4.196 5 C -0.118 4.118 6 C -0.174 4.174 7 C -0.026 4.026 8 O -0.321 6.321 9 C 0.175 3.825 10 H 0.055 0.945 11 C -0.565 4.565 12 H 0.048 0.952 13 C -0.173 4.173 14 N -0.572 5.572 15 Si 0.744 3.256 16 H -0.162 1.162 17 H -0.222 1.222 18 H -0.167 1.167 19 C -0.070 4.070 20 C -0.134 4.134 21 C -0.144 4.144 22 C -0.157 4.157 23 C -0.143 4.143 24 C -0.167 4.167 25 H 0.138 0.862 26 H 0.158 0.842 27 H 0.129 0.871 28 H 0.145 0.855 29 H 0.154 0.846 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.163 0.837 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.135 0.865 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.157 0.843 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.209 22.867 -27.915 36.460 hybrid contribution 0.288 -0.120 1.544 1.576 sum 5.497 22.747 -26.371 35.257 Atomic orbital electron populations 1.24315 0.76254 1.09116 1.09962 1.45794 1.15416 1.15685 1.14281 1.24284 1.05967 0.78424 1.09841 1.24348 1.06095 1.02160 0.86989 1.23692 1.05486 0.93684 0.88898 1.21928 1.03478 0.93356 0.98645 1.22374 0.97828 0.84048 0.98341 1.87719 1.76025 1.22961 1.45360 1.18687 0.93540 0.86039 0.84219 0.94490 1.21398 0.95277 1.44087 0.95764 0.95185 1.25928 1.01866 0.93833 0.95690 1.70039 1.36257 1.45600 1.05314 0.86174 0.80413 0.81094 0.77875 1.16233 1.22207 1.16712 1.20255 0.94507 0.96843 0.95388 1.20980 0.98610 0.95608 0.98193 1.21439 0.98801 0.93615 1.00509 1.21393 0.95394 1.00757 0.98194 1.21342 1.00168 0.94472 0.98303 1.21151 0.98976 0.95468 1.01087 0.86195 0.84189 0.87130 0.85513 0.84623 0.86218 0.86976 0.84403 0.85330 0.85014 0.83662 0.87735 0.89133 0.94864 0.92999 0.92144 0.86523 0.84094 0.83771 0.84319 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 2.01 7.67 127.69 0.98 2.99 16 2 N -0.25 9.70 0.05 ******* -0.07 9.63 16 3 C -0.04 1.85 8.03 127.69 1.03 2.87 16 4 C -0.06 2.13 7.67 127.69 0.98 3.11 16 5 C 0.00 -0.12 3.96 86.30 0.34 0.22 16 6 C -0.14 2.36 4.75 30.60 0.15 2.51 16 7 C 0.05 0.03 5.74 71.98 0.41 0.45 16 8 O -0.40 -5.78 9.21 -148.98 -1.37 -7.15 16 9 C 0.23 5.38 2.26 29.10 0.07 5.45 16 10 H 0.04 0.80 4.33 -2.39 -0.01 0.79 16 11 C -0.53 -18.30 9.17 25.60 0.23 -18.06 16 12 H 0.03 1.30 8.06 -2.91 -0.02 1.28 16 13 C 0.03 0.97 5.47 84.65 0.46 1.43 16 14 N -0.93 -39.25 13.96 21.44 0.30 -38.95 16 15 Si 0.92 23.12 26.95 68.60 1.85 24.97 16 16 H -0.24 -4.46 7.11 99.48 0.71 -3.75 16 17 H -0.30 -8.27 7.11 99.48 0.71 -7.57 16 18 H -0.24 -5.34 5.42 99.48 0.54 -4.80 16 19 C -0.07 -1.57 4.97 -19.87 -0.10 -1.67 16 20 C -0.12 -2.22 9.36 22.27 0.21 -2.02 16 21 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 22 C -0.14 -1.77 10.05 22.27 0.22 -1.54 16 23 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 24 C -0.15 -3.05 9.67 22.27 0.22 -2.83 16 25 H 0.12 -4.23 8.14 -2.39 -0.02 -4.25 16 26 H 0.14 -5.63 8.14 -2.38 -0.02 -5.65 16 27 H 0.11 -3.57 6.15 -2.39 -0.01 -3.59 16 28 H 0.13 -5.30 8.14 -2.39 -0.02 -5.32 16 29 H 0.14 -5.91 8.14 -2.39 -0.02 -5.93 16 30 H 0.12 -4.81 8.14 -2.38 -0.02 -4.83 16 31 H 0.11 -3.94 6.15 -2.39 -0.01 -3.95 16 32 H 0.14 -5.77 8.14 -2.39 -0.02 -5.79 16 33 H 0.13 -5.10 8.14 -2.39 -0.02 -5.12 16 34 H 0.13 -3.88 8.14 -2.39 -0.02 -3.90 16 35 H 0.15 -4.78 8.14 -2.39 -0.02 -4.80 16 36 H 0.10 -2.12 6.28 -2.39 -0.02 -2.13 16 37 H 0.09 -1.48 6.28 -2.39 -0.01 -1.49 16 38 H 0.03 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.05 -0.11 8.08 -2.39 -0.02 -0.13 16 40 H 0.27 10.51 8.31 -92.70 -0.77 9.74 16 41 H 0.12 2.16 7.71 -2.91 -0.02 2.14 16 42 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 43 H 0.14 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 45 H 0.11 2.25 6.69 -2.91 -0.02 2.23 16 Total: 0.00 -82.33 352.28 7.11 -75.21 By element: Atomic # 1 Polarization: -54.17 SS G_CDS: 0.76 Total: -53.41 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 5.64 Total: -10.30 kcal Atomic # 7 Polarization: -29.55 SS G_CDS: 0.23 Total: -29.32 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -1.37 Total: -7.15 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: 1.85 Total: 24.97 kcal Total: -82.33 7.11 -75.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224621986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.628 kcal (2) G-P(sol) polarization free energy of solvation -82.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds