Wall clock time and date at job start Tue Mar 31 2020 00:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99978 * 2 1 4 4 C 1.50698 * 120.00239 * 180.02562 * 2 1 3 5 5 H 1.09004 * 109.64165 * 359.57952 * 4 2 1 6 6 C 1.53024 * 109.64183 * 238.94595 * 4 2 1 7 7 C 1.50075 * 110.14654 * 190.87758 * 6 4 2 8 8 C 1.29443 * 124.07565 * 17.12821 * 7 6 4 9 9 C 1.50698 * 117.96383 * 179.55406 * 8 7 6 10 10 C 1.50069 * 124.07496 * 359.52824 * 8 7 6 11 11 H 1.09009 * 109.35888 * 137.33814 * 10 8 7 12 12 O 1.42897 * 109.36333 * 256.92644 * 10 8 7 13 13 C 1.42896 * 114.00358 * 209.21624 * 12 10 8 14 14 C 1.53001 * 109.47265 * 184.62935 * 13 12 10 15 15 C 1.52998 * 109.46860 * 179.97438 * 14 13 12 16 16 C 1.53008 * 109.46721 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00293 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99746 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99949 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00146 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46783 * 90.00328 * 21 19 17 23 23 H 1.48503 * 109.47396 * 210.00226 * 21 19 17 24 24 H 1.48499 * 109.47110 * 330.00370 * 21 19 17 25 25 C 1.53031 * 110.14644 * 17.13718 * 10 8 7 26 26 H 1.08001 * 120.00241 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99816 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47042 * 270.00202 * 3 2 1 29 29 H 1.08998 * 109.47268 * 30.00163 * 3 2 1 30 30 H 1.09000 * 109.47333 * 150.00547 * 3 2 1 31 31 H 1.09002 * 109.35774 * 311.07778 * 6 4 2 32 32 H 1.08995 * 109.36262 * 70.67108 * 6 4 2 33 33 H 1.07999 * 117.96303 * 197.15043 * 7 6 4 34 34 H 1.08997 * 109.46752 * 275.08946 * 9 8 7 35 35 H 1.09003 * 109.46938 * 35.09027 * 9 8 7 36 36 H 1.08999 * 109.47318 * 155.08863 * 9 8 7 37 37 H 1.08996 * 109.47452 * 304.63483 * 13 12 10 38 38 H 1.09008 * 109.46952 * 64.63205 * 13 12 10 39 39 H 1.08993 * 109.47630 * 300.00193 * 14 13 12 40 40 H 1.09002 * 109.46544 * 60.00400 * 14 13 12 41 41 H 1.09004 * 109.47571 * 300.00297 * 15 14 13 42 42 H 1.09002 * 109.47128 * 60.00864 * 15 14 13 43 43 H 1.09001 * 109.47257 * 299.99778 * 16 15 14 44 44 H 1.08995 * 109.47230 * 60.00017 * 16 15 14 45 45 H 0.97007 * 119.99912 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.64313 * 70.24716 * 25 10 8 47 47 H 1.09006 * 109.63680 * 190.66459 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 -0.0006 5 1 1.3577 -2.1357 0.0066 6 6 2.9646 -1.3793 1.2340 7 6 3.9100 -2.5387 1.1150 8 6 4.1720 -3.1498 0.0043 9 6 5.1530 -4.2932 0.0413 10 6 3.5593 -2.7908 -1.3177 11 1 4.3281 -2.8129 -2.0902 12 8 2.5399 -3.7387 -1.6404 13 6 2.3489 -3.9320 -3.0433 14 6 1.1644 -4.8730 -3.2720 15 6 0.9596 -5.0793 -4.7741 16 6 -0.2254 -6.0199 -5.0027 17 6 -0.4267 -6.2237 -6.4822 18 1 0.2255 -5.7319 -7.1888 19 6 -1.4430 -7.0387 -6.9338 20 7 -2.2369 -7.6380 -6.0734 21 14 -1.6930 -7.2908 -8.7678 22 1 -0.8925 -8.4567 -9.2208 23 1 -3.1310 -7.5413 -9.0415 24 1 -1.2544 -6.0750 -9.4989 25 6 2.9469 -1.3899 -1.2517 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 2.2451 1.6197 -1.0277 29 1 1.4744 2.0647 0.5138 30 1 3.0159 1.1747 0.5137 31 1 3.5357 -0.4549 1.3206 32 1 2.3483 -1.5057 2.1241 33 1 4.4022 -2.8850 2.0118 34 1 6.1679 -3.9038 -0.0382 35 1 5.0441 -4.8350 0.9808 36 1 4.9563 -4.9678 -0.7920 37 1 2.1472 -2.9719 -3.5183 38 1 3.2490 -4.3692 -3.4757 39 1 1.3660 -5.8331 -2.7971 40 1 0.2644 -4.4357 -2.8396 41 1 0.7577 -4.1190 -5.2486 42 1 1.8595 -5.5164 -5.2068 43 1 -0.0239 -6.9803 -4.5281 44 1 -1.1252 -5.5826 -4.5700 45 1 -2.9521 -8.2111 -6.3912 46 1 3.7407 -0.6455 -1.1910 47 1 2.3444 -1.2112 -2.1424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224693009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:31 Heat of formation + Delta-G solvation = -55.542622 kcal Electronic energy + Delta-G solvation = -21559.113489 eV Core-core repulsion = 18513.034165 eV Total energy + Delta-G solvation = -3046.079323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.199 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88951 -37.23802 -35.56015 -34.39297 -32.29628 -31.69763 -30.10430 -28.46242 -27.56749 -26.43351 -24.76657 -23.14719 -22.25314 -21.48955 -20.06659 -18.62019 -17.92093 -16.24733 -16.07199 -15.81715 -15.59545 -14.82263 -14.63859 -14.43857 -14.23722 -13.67647 -13.59126 -13.38441 -13.23037 -12.90832 -12.73122 -12.44960 -12.12895 -11.97622 -11.89314 -11.71173 -11.56829 -11.28248 -11.14370 -10.81219 -10.76937 -10.65338 -10.49007 -10.42282 -10.34410 -9.64209 -9.33637 -9.29216 -9.14787 -9.02910 -8.91370 -8.31349 -5.96359 -3.98750 1.95390 2.13890 3.33833 3.39814 3.43270 3.97021 4.41715 4.48798 4.56031 4.66550 4.86385 4.96822 5.06977 5.11065 5.23726 5.28900 5.38834 5.41706 5.43768 5.44694 5.46119 5.52551 5.55797 5.59361 5.65646 5.73668 5.81109 5.82799 5.85330 5.91028 6.04462 6.14917 6.16299 6.25039 6.45490 6.52156 6.55302 6.78130 6.81991 6.83027 6.95872 7.14010 7.44449 7.72307 7.87662 8.04492 8.46711 9.08603 9.64989 11.15003 Molecular weight = 278.20amu Principal moments of inertia in cm(-1) A = 0.020686 B = 0.003009 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.244648 B = 9303.374180 C =10138.189586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C -0.120 4.120 4 C -0.049 4.049 5 H 0.087 0.913 6 C -0.083 4.083 7 C -0.141 4.141 8 C -0.120 4.120 9 C -0.120 4.120 10 C 0.127 3.873 11 H 0.064 0.936 12 O -0.373 6.373 13 C 0.062 3.938 14 C -0.115 4.115 15 C -0.107 4.107 16 C 0.021 3.979 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.131 4.131 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.070 0.930 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.585 15.552 15.579 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.122 4.122 3 C -0.176 4.176 4 C -0.067 4.067 5 H 0.106 0.894 6 C -0.119 4.119 7 C -0.159 4.159 8 C -0.120 4.120 9 C -0.176 4.176 10 C 0.069 3.931 11 H 0.082 0.918 12 O -0.293 6.293 13 C -0.015 4.015 14 C -0.153 4.153 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.559 4.559 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.169 4.169 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.332 15.332 15.725 25.692 hybrid contribution -0.113 -0.116 -1.226 1.237 sum 13.218 15.216 14.499 24.829 Atomic orbital electron populations 1.23749 0.95247 1.01943 1.02113 1.21706 0.95274 0.95369 0.99854 1.20866 1.00164 0.94568 1.02018 1.20265 0.96826 0.95197 0.94422 0.89436 1.20497 0.96439 0.96865 0.98134 1.21957 0.98932 0.97907 0.97116 1.20732 0.98774 0.98198 0.94299 1.20909 0.97379 0.96505 1.02838 1.20693 0.89720 0.88512 0.94169 0.91801 1.88008 1.55795 1.61243 1.24255 1.22742 0.98860 0.98912 0.80954 1.21623 0.96222 0.98582 0.98836 1.21577 1.00714 1.00457 0.91760 1.19089 0.92039 0.93956 0.96485 1.21278 1.14303 1.27936 0.92363 0.92740 1.25037 0.95991 0.95869 0.97649 1.69976 1.18661 1.31168 1.33699 0.86603 0.77254 0.78484 0.85707 1.20690 1.21229 1.19897 1.22126 0.99498 0.96754 0.98531 0.88650 0.88258 0.91583 0.92061 0.91836 0.90690 0.90959 0.87588 0.91865 0.91879 0.91556 0.93725 0.93735 0.91752 0.91793 0.93396 0.93384 0.96563 0.96547 0.93034 0.91168 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 13.91 29.01 0.40 -1.56 16 2 C -0.12 -1.20 4.89 -101.07 -0.49 -1.69 16 3 C -0.12 -0.93 9.57 36.00 0.34 -0.59 16 4 C -0.05 -0.52 2.40 -91.56 -0.22 -0.74 16 5 H 0.09 1.14 7.44 -51.93 -0.39 0.75 16 6 C -0.08 -0.76 5.39 -28.17 -0.15 -0.91 16 7 C -0.14 -1.38 9.37 -35.90 -0.34 -1.72 16 8 C -0.12 -1.31 5.45 -100.94 -0.55 -1.86 16 9 C -0.12 -1.16 9.85 36.00 0.35 -0.80 16 10 C 0.13 1.52 2.56 -28.17 -0.07 1.45 16 11 H 0.06 0.72 7.83 -51.92 -0.41 0.31 16 12 O -0.37 -5.59 9.56 -35.23 -0.34 -5.93 16 13 C 0.06 0.93 5.70 37.16 0.21 1.14 16 14 C -0.12 -2.09 5.58 -26.73 -0.15 -2.23 16 15 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 18 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.13 -1.42 4.68 -26.51 -0.12 -1.54 16 26 H 0.10 0.84 8.04 -52.49 -0.42 0.42 16 27 H 0.10 1.06 7.84 -52.49 -0.41 0.65 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.43 8.06 -51.93 -0.42 0.01 16 30 H 0.06 0.44 6.41 -51.93 -0.33 0.11 16 31 H 0.07 0.60 6.39 -51.93 -0.33 0.26 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 0.89 7.86 -52.49 -0.41 0.48 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.56 7.99 -51.93 -0.41 0.15 16 36 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 37 H 0.04 0.64 7.56 -51.93 -0.39 0.25 16 38 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 47 H 0.07 0.83 7.55 -51.93 -0.39 0.44 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -30.81 374.23 -9.38 -40.19 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.92 Total: -3.21 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -1.47 Total: -26.90 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.74 Total: -26.74 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.34 Total: -5.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.81 -9.38 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.355 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds