Wall clock time and date at job start Tue Mar 31 2020 00:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00122 * 2 1 4 4 C 1.50704 * 119.99921 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.64109 * 359.57865 * 4 2 1 6 6 C 1.53029 * 109.64304 * 120.00193 * 4 2 1 7 7 C 1.50060 * 110.14588 * 169.12167 * 6 4 2 8 8 C 1.29446 * 124.07854 * 342.86470 * 7 6 4 9 9 C 1.50698 * 117.96444 * 180.47580 * 8 7 6 10 10 C 1.50069 * 124.07178 * 0.44859 * 8 7 6 11 11 H 1.08998 * 109.35805 * 102.96243 * 10 8 7 12 12 O 1.42907 * 109.35685 * 222.68577 * 10 8 7 13 13 C 1.42897 * 113.99629 * 207.94620 * 12 10 8 14 14 C 1.53002 * 109.46823 * 175.58454 * 13 12 10 15 15 C 1.53003 * 109.46906 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.46906 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47296 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99896 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00357 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00073 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00377 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46872 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47354 * 119.99473 * 21 19 17 24 24 H 1.48497 * 109.47380 * 239.99811 * 21 19 17 25 25 C 1.53024 * 110.14891 * 342.89243 * 10 8 7 26 26 H 1.07999 * 120.00102 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00005 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47168 * 239.99914 * 3 2 1 29 29 H 1.08998 * 109.47110 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47245 * 120.00009 * 3 2 1 31 31 H 1.09002 * 109.35743 * 48.91009 * 6 4 2 32 32 H 1.08998 * 109.24227 * 289.25941 * 6 4 2 33 33 H 1.08005 * 117.95972 * 162.84537 * 7 6 4 34 34 H 1.09005 * 109.46483 * 275.01648 * 9 8 7 35 35 H 1.09002 * 109.47366 * 35.00908 * 9 8 7 36 36 H 1.08997 * 109.47214 * 155.01633 * 9 8 7 37 37 H 1.09003 * 109.47645 * 55.58407 * 13 12 10 38 38 H 1.08998 * 109.47234 * 295.58500 * 13 12 10 39 39 H 1.08995 * 109.46948 * 59.99840 * 14 13 12 40 40 H 1.08996 * 109.47021 * 299.99542 * 14 13 12 41 41 H 1.08995 * 109.47527 * 60.00098 * 15 14 13 42 42 H 1.08996 * 109.46828 * 299.99564 * 15 14 13 43 43 H 1.09003 * 109.47049 * 59.99491 * 16 15 14 44 44 H 1.08998 * 109.47253 * 299.99937 * 16 15 14 45 45 H 0.97000 * 120.00201 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.64206 * 169.12324 * 25 10 8 47 47 H 1.08999 * 109.64097 * 289.75180 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3576 -2.1357 0.0066 6 6 2.9448 -1.3898 -1.2487 7 6 3.8919 -2.5482 -1.1351 8 6 4.1717 -3.1500 -0.0237 9 6 5.1524 -4.2933 -0.0667 10 6 3.5806 -2.7795 1.3050 11 1 2.8054 -3.4989 1.5688 12 8 4.6048 -2.7999 2.3013 13 6 4.1296 -3.0902 3.6173 14 6 5.3169 -3.1947 4.5767 15 6 4.8082 -3.5061 5.9857 16 6 5.9955 -3.6112 6.9449 17 6 5.4945 -3.9174 8.3328 18 1 4.4350 -4.0257 8.5128 19 6 6.3883 -4.0581 9.3730 20 7 7.6784 -3.9257 9.1540 21 14 5.7672 -4.4369 11.0936 22 1 4.2857 -4.5368 11.0741 23 1 6.3436 -5.7253 11.5555 24 1 6.1786 -3.3506 12.0187 25 6 2.9670 -1.3793 1.2369 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 2.6902 1.3628 -0.8900 29 1 1.3552 2.1336 -0.0005 30 1 2.6902 1.3628 0.8900 31 1 3.5143 -0.4661 -1.3522 32 1 2.3126 -1.5246 -2.1264 33 1 4.3697 -2.9020 -2.0368 34 1 4.6274 -5.2127 -0.3264 35 1 5.9175 -4.0880 -0.8155 36 1 5.6216 -4.4065 0.9106 37 1 3.5863 -4.0351 3.6074 38 1 3.4646 -2.2923 3.9478 39 1 5.8601 -2.2498 4.5867 40 1 5.9818 -3.9926 4.2463 41 1 4.2652 -4.4512 5.9753 42 1 4.1430 -2.7085 6.3163 43 1 6.5389 -2.6664 6.9553 44 1 6.6604 -4.4090 6.6141 45 1 8.3073 -4.0251 9.8857 46 1 2.3760 -1.1942 2.1338 47 1 3.7597 -0.6354 1.1568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224693010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:33 Heat of formation + Delta-G solvation = -56.934618 kcal Electronic energy + Delta-G solvation = -21332.934203 eV Core-core repulsion = 18286.794518 eV Total energy + Delta-G solvation = -3046.139685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.199 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.89290 -37.45449 -35.59231 -34.42294 -32.31516 -31.78771 -30.08340 -28.44238 -27.64944 -26.45661 -24.79601 -23.07144 -22.23720 -21.64851 -20.07895 -18.74403 -17.88172 -16.49813 -16.19795 -15.82550 -15.57268 -14.84348 -14.68001 -14.43510 -14.42621 -13.70078 -13.53170 -13.34180 -13.09690 -12.97488 -12.89318 -12.43481 -12.11636 -11.95934 -11.84287 -11.78007 -11.61603 -11.38584 -11.18954 -11.04420 -10.88271 -10.64752 -10.51750 -10.43258 -10.31792 -9.66071 -9.45426 -9.31542 -9.22649 -9.01041 -8.88313 -8.32393 -5.97200 -3.99542 1.91007 2.04861 3.32448 3.39698 3.43896 3.83509 4.30733 4.47758 4.50565 4.57147 4.85543 4.90689 4.99022 5.08058 5.13967 5.24336 5.33226 5.38032 5.39073 5.40936 5.47635 5.51491 5.55265 5.60212 5.64749 5.71584 5.72240 5.78198 5.81872 5.91238 6.05425 6.07247 6.14546 6.19650 6.37254 6.46811 6.50976 6.62115 6.80480 6.81256 6.94730 7.13026 7.41646 7.71757 7.86707 8.03715 8.46000 9.08081 9.64386 11.14228 Molecular weight = 278.20amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.002727 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.202593 B =10264.344531 C =11056.999417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.122 4.122 4 C -0.051 4.051 5 H 0.077 0.923 6 C -0.081 4.081 7 C -0.157 4.157 8 C -0.112 4.112 9 C -0.122 4.122 10 C 0.127 3.873 11 H 0.066 0.934 12 O -0.375 6.375 13 C 0.062 3.938 14 C -0.116 4.116 15 C -0.107 4.107 16 C 0.021 3.979 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.132 4.132 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 5.868 -23.433 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.115 4.115 3 C -0.179 4.179 4 C -0.069 4.069 5 H 0.095 0.905 6 C -0.117 4.117 7 C -0.175 4.175 8 C -0.112 4.112 9 C -0.179 4.179 10 C 0.069 3.931 11 H 0.084 0.916 12 O -0.294 6.294 13 C -0.014 4.014 14 C -0.153 4.153 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.169 4.169 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.401 5.890 -23.381 26.671 hybrid contribution -0.550 -0.283 1.067 1.233 sum -11.951 5.607 -22.314 25.927 Atomic orbital electron populations 1.23719 0.95096 1.01798 1.02956 1.21696 0.95201 0.95473 0.99124 1.20899 1.00353 0.94128 1.02473 1.20316 0.96550 0.94998 0.95084 0.90509 1.20469 0.96431 0.97432 0.97415 1.21881 1.00464 0.97651 0.97491 1.20819 0.98767 0.98105 0.93501 1.20895 0.97592 0.95851 1.03563 1.20656 0.89772 0.95696 0.86939 0.91644 1.87969 1.33056 1.91777 1.16597 1.22752 0.97942 0.98704 0.82049 1.21634 0.96554 1.02501 0.94642 1.21575 1.00512 0.99883 0.92545 1.19093 0.92430 0.97243 0.92840 1.21314 0.93123 1.47888 0.93486 0.92684 1.25036 0.94895 0.95542 0.99088 1.69981 1.01184 1.50398 1.31955 0.86551 0.78981 0.77908 0.84648 1.19757 1.21026 1.21019 1.22143 0.99164 0.97999 0.97641 0.88489 0.88597 0.91494 0.92087 0.91230 0.90505 0.91108 0.87425 0.91996 0.92104 0.90464 0.93661 0.93644 0.91701 0.91751 0.93381 0.93363 0.96543 0.96543 0.93081 0.91296 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 13.93 29.01 0.40 -1.17 16 2 C -0.11 -0.97 4.89 -101.06 -0.49 -1.46 16 3 C -0.12 -0.92 9.48 36.01 0.34 -0.58 16 4 C -0.05 -0.46 2.42 -91.55 -0.22 -0.68 16 5 H 0.08 0.69 7.78 -51.93 -0.40 0.28 16 6 C -0.08 -0.67 5.39 -28.18 -0.15 -0.82 16 7 C -0.16 -1.48 9.37 -35.90 -0.34 -1.82 16 8 C -0.11 -1.24 5.64 -100.94 -0.57 -1.80 16 9 C -0.12 -1.30 9.78 36.00 0.35 -0.95 16 10 C 0.13 1.52 2.69 -28.18 -0.08 1.45 16 11 H 0.07 0.75 7.74 -51.93 -0.40 0.35 16 12 O -0.37 -5.54 8.87 -35.23 -0.31 -5.85 16 13 C 0.06 0.93 5.77 37.16 0.21 1.14 16 14 C -0.12 -2.07 5.58 -26.73 -0.15 -2.22 16 15 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 16 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 17 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 18 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 21 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.13 -1.41 4.47 -26.51 -0.12 -1.53 16 26 H 0.10 0.68 7.83 -52.49 -0.41 0.26 16 27 H 0.10 0.71 7.84 -52.49 -0.41 0.30 16 28 H 0.07 0.46 7.11 -51.93 -0.37 0.09 16 29 H 0.06 0.41 7.78 -51.93 -0.40 0.00 16 30 H 0.07 0.56 7.59 -51.93 -0.39 0.17 16 31 H 0.08 0.62 6.78 -51.93 -0.35 0.27 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.11 0.89 7.87 -52.48 -0.41 0.47 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.58 8.00 -51.93 -0.42 0.16 16 36 H 0.08 0.96 7.09 -51.93 -0.37 0.59 16 37 H 0.05 0.64 7.98 -51.93 -0.41 0.22 16 38 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 47 H 0.08 0.89 7.69 -51.93 -0.40 0.49 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -30.55 373.53 -9.38 -39.93 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -8.92 Total: -3.72 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -1.49 Total: -26.21 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.74 Total: -26.67 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.31 Total: -5.85 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.55 -9.38 -39.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.003 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds