Wall clock time and date at job start Tue Mar 31 2020 00:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00164 * 2 1 4 4 C 1.50703 * 119.99592 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.64324 * 359.58132 * 4 2 1 6 6 C 1.53016 * 109.64274 * 238.94383 * 4 2 1 7 7 C 1.50070 * 110.14944 * 190.88344 * 6 4 2 8 8 C 1.29251 * 124.01514 * 17.26071 * 7 6 4 9 9 C 1.50703 * 117.81851 * 179.44285 * 8 7 6 10 10 C 1.50074 * 124.22148 * 359.27368 * 8 7 6 11 11 H 1.09000 * 109.35203 * 257.20922 * 10 8 7 12 12 O 1.42892 * 109.35941 * 137.48730 * 10 8 7 13 13 C 1.42903 * 114.00196 * 151.31808 * 12 10 8 14 14 C 1.52989 * 109.47639 * 175.45054 * 13 12 10 15 15 C 1.53002 * 109.47443 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47225 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47088 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00200 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00151 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99673 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00324 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47342 * 89.99764 * 21 19 17 23 23 H 1.48500 * 109.47398 * 210.00352 * 21 19 17 24 24 H 1.48505 * 109.46997 * 330.00248 * 21 19 17 25 25 C 1.53027 * 110.03292 * 17.34863 * 10 8 7 26 26 H 1.07996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00037 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47433 * 239.99865 * 3 2 1 29 29 H 1.08996 * 109.47120 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.46947 * 120.00057 * 3 2 1 31 31 H 1.09005 * 109.35845 * 311.08899 * 6 4 2 32 32 H 1.08997 * 109.35882 * 70.67340 * 6 4 2 33 33 H 1.07996 * 117.96355 * 197.15206 * 7 6 4 34 34 H 1.08999 * 109.46885 * 274.82739 * 9 8 7 35 35 H 1.08999 * 109.47156 * 34.82834 * 9 8 7 36 36 H 1.08998 * 109.46990 * 154.82792 * 9 8 7 37 37 H 1.09000 * 109.46959 * 55.44616 * 13 12 10 38 38 H 1.09006 * 109.47159 * 295.45623 * 13 12 10 39 39 H 1.09006 * 109.47310 * 300.00477 * 14 13 12 40 40 H 1.09000 * 109.47302 * 59.99772 * 14 13 12 41 41 H 1.09001 * 109.46842 * 300.00125 * 15 14 13 42 42 H 1.09000 * 109.46857 * 60.00291 * 15 14 13 43 43 H 1.09003 * 109.46650 * 299.99791 * 16 15 14 44 44 H 1.09000 * 109.47565 * 59.99633 * 16 15 14 45 45 H 0.97007 * 120.00048 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.64137 * 70.18343 * 25 10 8 47 47 H 1.09002 * 109.63719 * 190.60301 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 1 1.3576 -2.1357 0.0065 6 6 2.9645 -1.3795 1.2339 7 6 3.9099 -2.5389 1.1149 8 6 4.1725 -3.1467 0.0048 9 6 5.1554 -4.2884 0.0435 10 6 3.5592 -2.7907 -1.3179 11 1 2.7812 -3.5141 -1.5616 12 8 4.5670 -2.8198 -2.3304 13 6 4.0736 -3.1407 -3.6326 14 6 5.2110 -3.0323 -4.6501 15 6 4.6825 -3.3753 -6.0444 16 6 5.8202 -3.2675 -7.0617 17 6 5.2995 -3.6047 -8.4351 18 1 4.2610 -3.8689 -8.5690 19 6 6.1488 -3.5748 -9.5209 20 7 7.4134 -3.2525 -9.3579 21 14 5.5032 -3.9920 -11.2234 22 1 5.0158 -2.7551 -11.8849 23 1 6.5946 -4.5897 -12.0339 24 1 4.3859 -4.9631 -11.1049 25 6 2.9468 -1.3899 -1.2518 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 2.6902 1.3628 -0.8899 29 1 1.3553 2.1335 0.0005 30 1 2.6902 1.3627 0.8900 31 1 3.5356 -0.4551 1.3206 32 1 2.3481 -1.5059 2.1240 33 1 4.4019 -2.8852 2.0116 34 1 6.1696 -3.8977 -0.0388 35 1 5.0490 -4.8276 0.9848 36 1 4.9584 -4.9657 -0.7874 37 1 3.2783 -2.4454 -3.9013 38 1 3.6820 -4.1579 -3.6323 39 1 5.6027 -2.0151 -4.6504 40 1 6.0063 -3.7276 -4.3814 41 1 4.2907 -4.3924 -6.0443 42 1 3.8875 -2.6796 -6.3128 43 1 6.2124 -2.2505 -7.0618 44 1 6.6150 -3.9634 -6.7932 45 1 8.0110 -3.2318 -10.1217 46 1 3.7407 -0.6455 -1.1910 47 1 2.3443 -1.2111 -2.1423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224693011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:35 Heat of formation + Delta-G solvation = -56.690851 kcal Electronic energy + Delta-G solvation = -21343.734061 eV Core-core repulsion = 18297.604947 eV Total energy + Delta-G solvation = -3046.129114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.89507 -37.44537 -35.60657 -34.42287 -32.31280 -31.79033 -30.08777 -28.44569 -27.63976 -26.45622 -24.78724 -23.07602 -22.23440 -21.65761 -20.07368 -18.74187 -17.88530 -16.49580 -16.19564 -15.79806 -15.57537 -14.81794 -14.65985 -14.45352 -14.43134 -13.68553 -13.53678 -13.35174 -13.04383 -12.99622 -12.94198 -12.44364 -12.08597 -11.94643 -11.88449 -11.77029 -11.62110 -11.37887 -11.16900 -11.05461 -10.86830 -10.66726 -10.52161 -10.44521 -10.31318 -9.65666 -9.46082 -9.30015 -9.23230 -9.02660 -8.87626 -8.31888 -5.96933 -3.99307 1.91372 2.05514 3.33512 3.39516 3.42934 3.84910 4.30920 4.47725 4.50227 4.57523 4.85474 4.91069 4.98604 5.07781 5.14078 5.24494 5.33354 5.38263 5.39835 5.41505 5.46702 5.49833 5.54524 5.61186 5.67416 5.72361 5.73092 5.78227 5.82145 5.90695 6.02285 6.06619 6.14578 6.19973 6.37919 6.46195 6.51186 6.62751 6.79412 6.81181 6.94962 7.13252 7.42240 7.71696 7.86942 8.03906 8.46180 9.08077 9.64470 11.14457 Molecular weight = 278.20amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.002759 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.261941 B =10147.058758 C =10947.240484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.122 4.122 4 C -0.050 4.050 5 H 0.077 0.923 6 C -0.081 4.081 7 C -0.156 4.156 8 C -0.112 4.112 9 C -0.115 4.115 10 C 0.128 3.872 11 H 0.066 0.934 12 O -0.375 6.375 13 C 0.062 3.938 14 C -0.115 4.115 15 C -0.107 4.107 16 C 0.021 3.979 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.132 4.132 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.077 0.923 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 4.307 23.946 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.115 4.115 3 C -0.179 4.179 4 C -0.069 4.069 5 H 0.095 0.905 6 C -0.118 4.118 7 C -0.174 4.174 8 C -0.113 4.113 9 C -0.171 4.171 10 C 0.070 3.930 11 H 0.084 0.916 12 O -0.294 6.294 13 C -0.015 4.015 14 C -0.153 4.153 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.559 4.559 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.170 4.170 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.720 4.355 23.881 26.537 hybrid contribution -0.566 -0.276 -1.083 1.253 sum -11.286 4.078 22.798 25.764 Atomic orbital electron populations 1.23719 0.95096 1.01798 1.02950 1.21695 0.95203 0.95469 0.99128 1.20897 1.00359 0.94130 1.02474 1.20303 0.96546 0.95004 0.95039 0.90509 1.20467 0.96357 0.97439 0.97506 1.21827 1.00277 0.97701 0.97624 1.20784 0.98712 0.98159 0.93607 1.20818 0.98435 0.96213 1.01666 1.20675 0.90017 0.95734 0.86604 0.91628 1.87986 1.33421 1.91190 1.16786 1.22743 0.97827 0.98544 0.82340 1.21629 0.97047 1.02519 0.94114 1.21577 1.00364 0.99858 0.92720 1.19086 0.92845 0.97262 0.92369 1.21277 0.95784 1.46217 0.92620 0.92737 1.25037 0.94893 0.95448 0.99163 1.69973 1.03999 1.48867 1.30676 0.86602 0.78506 0.78566 0.84369 1.20684 1.21225 1.19898 1.22142 0.99336 0.97982 0.97526 0.88486 0.88598 0.91221 0.92082 0.91496 0.90510 0.91102 0.87400 0.91175 0.92434 0.91762 0.93671 0.93682 0.91749 0.91713 0.93370 0.93386 0.96566 0.96536 0.93026 0.90434 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 13.93 29.01 0.40 -1.18 16 2 C -0.11 -0.98 4.89 -101.07 -0.49 -1.47 16 3 C -0.12 -0.93 9.48 36.00 0.34 -0.59 16 4 C -0.05 -0.45 2.42 -91.56 -0.22 -0.67 16 5 H 0.08 0.69 7.78 -51.93 -0.40 0.29 16 6 C -0.08 -0.67 5.38 -28.18 -0.15 -0.83 16 7 C -0.16 -1.47 9.36 -35.85 -0.34 -1.80 16 8 C -0.11 -1.24 5.63 -100.89 -0.57 -1.80 16 9 C -0.11 -1.20 9.36 36.01 0.34 -0.87 16 10 C 0.13 1.53 2.62 -28.17 -0.07 1.46 16 11 H 0.07 0.75 7.84 -51.93 -0.41 0.35 16 12 O -0.37 -5.56 9.47 -35.23 -0.33 -5.89 16 13 C 0.06 0.93 5.71 37.15 0.21 1.14 16 14 C -0.12 -2.08 5.58 -26.74 -0.15 -2.23 16 15 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 21 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.13 -1.43 4.46 -26.51 -0.12 -1.55 16 26 H 0.10 0.69 7.83 -52.49 -0.41 0.27 16 27 H 0.10 0.72 7.84 -52.49 -0.41 0.31 16 28 H 0.07 0.57 7.61 -51.93 -0.40 0.18 16 29 H 0.06 0.42 7.78 -51.93 -0.40 0.01 16 30 H 0.07 0.46 7.09 -51.93 -0.37 0.09 16 31 H 0.08 0.62 6.75 -51.93 -0.35 0.27 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.11 0.88 7.85 -52.49 -0.41 0.47 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.50 7.98 -51.93 -0.41 0.08 16 36 H 0.06 0.72 8.01 -51.93 -0.42 0.30 16 37 H 0.04 0.64 7.87 -51.93 -0.41 0.23 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.08 0.90 7.70 -51.93 -0.40 0.50 16 47 H 0.07 0.77 7.93 -51.93 -0.41 0.35 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -30.60 374.32 -9.44 -40.04 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -8.96 Total: -3.81 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -1.50 Total: -26.20 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.33 Total: -5.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.60 -9.44 -40.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.653 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds