Wall clock time and date at job start Tue Mar 31 2020 00:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00164 * 2 1 4 4 C 1.50703 * 119.99592 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.64324 * 359.58132 * 4 2 1 6 6 C 1.53016 * 109.64274 * 238.94383 * 4 2 1 7 7 C 1.50070 * 110.14944 * 190.88344 * 6 4 2 8 8 C 1.29251 * 124.01514 * 17.26071 * 7 6 4 9 9 C 1.50703 * 117.81851 * 179.44285 * 8 7 6 10 10 C 1.50074 * 124.22148 * 359.27368 * 8 7 6 11 11 H 1.09000 * 109.35203 * 257.20922 * 10 8 7 12 12 O 1.42892 * 109.35941 * 137.48730 * 10 8 7 13 13 C 1.42903 * 114.00196 * 151.31808 * 12 10 8 14 14 C 1.52989 * 109.47639 * 175.45054 * 13 12 10 15 15 C 1.53002 * 109.47443 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47225 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47088 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00200 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00151 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99673 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00324 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47342 * 89.99764 * 21 19 17 23 23 H 1.48500 * 109.47398 * 210.00352 * 21 19 17 24 24 H 1.48505 * 109.46997 * 330.00248 * 21 19 17 25 25 C 1.53027 * 110.03292 * 17.34863 * 10 8 7 26 26 H 1.07996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00037 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47433 * 239.99865 * 3 2 1 29 29 H 1.08996 * 109.47120 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.46947 * 120.00057 * 3 2 1 31 31 H 1.09005 * 109.35845 * 311.08899 * 6 4 2 32 32 H 1.08997 * 109.35882 * 70.67340 * 6 4 2 33 33 H 1.07996 * 117.96355 * 197.15206 * 7 6 4 34 34 H 1.08999 * 109.46885 * 274.82739 * 9 8 7 35 35 H 1.08999 * 109.47156 * 34.82834 * 9 8 7 36 36 H 1.08998 * 109.46990 * 154.82792 * 9 8 7 37 37 H 1.09000 * 109.46959 * 55.44616 * 13 12 10 38 38 H 1.09006 * 109.47159 * 295.45623 * 13 12 10 39 39 H 1.09006 * 109.47310 * 300.00477 * 14 13 12 40 40 H 1.09000 * 109.47302 * 59.99772 * 14 13 12 41 41 H 1.09001 * 109.46842 * 300.00125 * 15 14 13 42 42 H 1.09000 * 109.46857 * 60.00291 * 15 14 13 43 43 H 1.09003 * 109.46650 * 299.99791 * 16 15 14 44 44 H 1.09000 * 109.47565 * 59.99633 * 16 15 14 45 45 H 0.97007 * 120.00048 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.64137 * 70.18343 * 25 10 8 47 47 H 1.09002 * 109.63719 * 190.60301 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 1 1.3576 -2.1357 0.0065 6 6 2.9645 -1.3795 1.2339 7 6 3.9099 -2.5389 1.1149 8 6 4.1725 -3.1467 0.0048 9 6 5.1554 -4.2884 0.0435 10 6 3.5592 -2.7907 -1.3179 11 1 2.7812 -3.5141 -1.5616 12 8 4.5670 -2.8198 -2.3304 13 6 4.0736 -3.1407 -3.6326 14 6 5.2110 -3.0323 -4.6501 15 6 4.6825 -3.3753 -6.0444 16 6 5.8202 -3.2675 -7.0617 17 6 5.2995 -3.6047 -8.4351 18 1 4.2610 -3.8689 -8.5690 19 6 6.1488 -3.5748 -9.5209 20 7 7.4134 -3.2525 -9.3579 21 14 5.5032 -3.9920 -11.2234 22 1 5.0158 -2.7551 -11.8849 23 1 6.5946 -4.5897 -12.0339 24 1 4.3859 -4.9631 -11.1049 25 6 2.9468 -1.3899 -1.2518 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 2.6902 1.3628 -0.8899 29 1 1.3553 2.1335 0.0005 30 1 2.6902 1.3627 0.8900 31 1 3.5356 -0.4551 1.3206 32 1 2.3481 -1.5059 2.1240 33 1 4.4019 -2.8852 2.0116 34 1 6.1696 -3.8977 -0.0388 35 1 5.0490 -4.8276 0.9848 36 1 4.9584 -4.9657 -0.7874 37 1 3.2783 -2.4454 -3.9013 38 1 3.6820 -4.1579 -3.6323 39 1 5.6027 -2.0151 -4.6504 40 1 6.0063 -3.7276 -4.3814 41 1 4.2907 -4.3924 -6.0443 42 1 3.8875 -2.6796 -6.3128 43 1 6.2124 -2.2505 -7.0618 44 1 6.6150 -3.9634 -6.7932 45 1 8.0110 -3.2318 -10.1217 46 1 3.7407 -0.6455 -1.1910 47 1 2.3443 -1.2111 -2.1423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224693011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:34 Heat of formation + Delta-G solvation = -70.758875 kcal Electronic energy + Delta-G solvation = -21344.344097 eV Core-core repulsion = 18297.604947 eV Total energy + Delta-G solvation = -3046.739150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.199 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74183 -38.45742 -36.63771 -35.97774 -34.28333 -32.52164 -31.21581 -30.01656 -28.23745 -27.29558 -26.56504 -24.07233 -23.33253 -22.90320 -21.82394 -19.46356 -18.72974 -18.38162 -17.50727 -16.96380 -16.56507 -16.35845 -15.73811 -15.58272 -15.31886 -14.70727 -14.55198 -14.33010 -14.27282 -13.99840 -13.87779 -13.65434 -13.57730 -13.22871 -12.98179 -12.79337 -12.62791 -12.53192 -12.48821 -12.35834 -12.32220 -12.07936 -11.87900 -11.61239 -11.45209 -11.33335 -11.25040 -11.08155 -10.56215 -10.46438 -9.89847 -9.67207 -8.20383 -6.32139 1.17197 1.38021 1.39708 1.41590 1.52753 2.40527 2.79976 3.12501 3.58894 3.69608 3.86822 4.04266 4.10000 4.15531 4.15931 4.24598 4.34497 4.37964 4.44075 4.56422 4.61193 4.63351 4.66233 4.73888 4.80002 4.81787 4.85440 4.88373 4.94132 5.01836 5.08767 5.11720 5.15324 5.16885 5.22976 5.24139 5.28456 5.33535 5.52502 5.67888 5.74612 5.77803 5.85140 5.98112 6.01956 6.23903 6.33282 6.85316 7.37290 8.91764 Molecular weight = 278.20amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.002759 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.261941 B =10147.058758 C =10947.240484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.045 4.045 5 H 0.078 0.922 6 C -0.082 4.082 7 C -0.141 4.141 8 C -0.140 4.140 9 C -0.112 4.112 10 C 0.123 3.877 11 H 0.070 0.930 12 O -0.392 6.392 13 C 0.072 3.928 14 C -0.108 4.108 15 C -0.094 4.094 16 C 0.023 3.977 17 C -0.545 4.545 18 H 0.062 0.938 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 C -0.128 4.128 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.055 0.945 43 H -0.011 1.011 44 H -0.010 1.010 45 H 0.264 0.736 46 H 0.066 0.934 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 4.252 24.794 28.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.126 4.126 3 C -0.179 4.179 4 C -0.064 4.064 5 H 0.096 0.904 6 C -0.118 4.118 7 C -0.158 4.158 8 C -0.140 4.140 9 C -0.169 4.169 10 C 0.066 3.934 11 H 0.088 0.912 12 O -0.312 6.312 13 C -0.005 4.005 14 C -0.146 4.146 15 C -0.132 4.132 16 C -0.014 4.014 17 C -0.583 4.583 18 H 0.080 0.920 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.186 1.186 25 C -0.165 4.165 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.641 4.301 24.748 28.120 hybrid contribution 0.043 -0.224 -1.276 1.296 sum -12.598 4.077 23.471 26.949 Atomic orbital electron populations 1.23880 0.95021 1.02496 1.01945 1.21738 0.95468 0.95432 1.00007 1.20909 1.00494 0.94131 1.02359 1.20255 0.96348 0.95470 0.94298 0.90358 1.20528 0.96327 0.97157 0.97818 1.22078 0.99247 0.96942 0.97580 1.20811 1.00147 0.99430 0.93583 1.20788 0.97811 0.96076 1.02178 1.20853 0.89651 0.96517 0.86363 0.91240 1.87944 1.34932 1.91357 1.16986 1.22512 0.96359 0.99524 0.82076 1.21442 0.97930 1.01614 0.93566 1.21355 0.98369 1.00624 0.92827 1.19014 0.93990 0.94769 0.93670 1.21733 0.96324 1.46361 0.93849 0.91962 1.26043 0.95043 0.95063 1.03961 1.70114 1.05477 1.49765 1.32206 0.85409 0.78158 0.78758 0.78495 1.19690 1.20719 1.18569 1.22078 0.99152 0.96901 0.98406 0.87592 0.88186 0.92213 0.91278 0.90757 0.90039 0.89399 0.85783 0.92199 0.90547 0.93011 0.92659 0.92574 0.92661 0.92547 0.92545 0.92587 0.99226 0.99162 0.92752 0.91560 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.76 13.93 67.78 0.94 -1.81 16 2 C -0.13 -1.93 4.89 -16.49 -0.08 -2.01 16 3 C -0.12 -1.70 9.48 71.24 0.68 -1.03 16 4 C -0.05 -0.74 2.42 -11.40 -0.03 -0.77 16 5 H 0.08 1.26 7.78 -2.39 -0.02 1.24 16 6 C -0.08 -1.18 5.38 29.66 0.16 -1.02 16 7 C -0.14 -2.36 9.36 27.22 0.25 -2.10 16 8 C -0.14 -2.92 5.63 -14.91 -0.08 -3.00 16 9 C -0.11 -2.28 9.36 71.24 0.67 -1.61 16 10 C 0.12 2.88 2.62 29.66 0.08 2.95 16 11 H 0.07 1.53 7.84 -2.39 -0.02 1.51 16 12 O -0.39 -11.59 9.47 -148.98 -1.41 -13.00 16 13 C 0.07 2.11 5.71 71.98 0.41 2.52 16 14 C -0.11 -3.92 5.58 30.59 0.17 -3.75 16 15 C -0.09 -3.96 5.15 30.60 0.16 -3.80 16 16 C 0.02 1.24 4.97 29.85 0.15 1.39 16 17 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 18 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 19 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 20 N -0.94 -58.35 13.29 21.45 0.28 -58.07 16 21 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 25 C -0.13 -2.66 4.46 30.74 0.14 -2.53 16 26 H 0.11 1.28 7.83 -2.91 -0.02 1.25 16 27 H 0.10 1.30 7.84 -2.91 -0.02 1.28 16 28 H 0.06 0.94 7.61 -2.39 -0.02 0.92 16 29 H 0.07 0.83 7.78 -2.39 -0.02 0.81 16 30 H 0.07 0.90 7.09 -2.39 -0.02 0.88 16 31 H 0.08 1.14 6.75 -2.38 -0.02 1.13 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 1.68 7.85 -2.91 -0.02 1.66 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.21 7.98 -2.39 -0.02 1.19 16 36 H 0.05 1.15 8.01 -2.39 -0.02 1.13 16 37 H 0.06 1.52 7.87 -2.39 -0.02 1.50 16 38 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 44 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 45 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 46 H 0.07 1.52 7.70 -2.39 -0.02 1.50 16 47 H 0.06 1.36 7.93 -2.39 -0.02 1.34 16 Total: -1.00 -65.84 374.32 6.09 -59.74 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.88 Total: 12.28 kcal Atomic # 6 Polarization: -52.18 SS G_CDS: 4.31 Total: -47.87 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.28 Total: -58.07 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.41 Total: -13.00 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.84 6.09 -59.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.015 kcal (2) G-P(sol) polarization free energy of solvation -65.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds