Wall clock time and date at job start Tue Mar 31 2020 00:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99975 * 2 1 4 4 H 1.48498 * 109.47290 * 269.99969 * 3 2 1 5 5 H 1.48500 * 109.46986 * 29.99894 * 3 2 1 6 6 H 1.48501 * 109.46983 * 149.99625 * 3 2 1 7 7 C 1.37879 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99946 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99612 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47039 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47108 * 179.97438 * 10 9 7 12 12 C 1.48519 * 110.99835 * 52.57905 * 11 10 9 13 13 C 1.54896 * 103.20589 * 160.15501 * 12 11 10 14 14 C 1.56391 * 103.10883 * 322.15780 * 13 12 11 15 15 H 1.09000 * 113.04496 * 260.64350 * 14 13 12 16 16 C 1.47834 * 111.00093 * 169.99620 * 11 10 9 17 17 H 1.09003 * 111.65603 * 336.82423 * 16 11 10 18 18 C 1.54516 * 108.84760 * 100.58552 * 16 11 10 19 19 C 1.54896 * 103.07292 * 136.50127 * 18 16 11 20 20 N 1.47831 * 108.98477 * 135.85595 * 14 13 12 21 21 C 1.46906 * 110.99923 * 101.56513 * 20 14 13 22 22 C 1.54270 * 110.03070 * 294.46306 * 21 20 14 23 23 C 1.54886 * 104.19394 * 217.10670 * 22 21 20 24 24 C 1.54893 * 102.74991 * 37.94007 * 23 22 21 25 25 C 1.53873 * 110.03251 * 177.29412 * 21 20 14 26 26 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47091 * 59.99982 * 9 7 2 28 28 H 1.09002 * 109.47444 * 299.99871 * 9 7 2 29 29 H 1.09000 * 109.46947 * 59.99802 * 10 9 7 30 30 H 1.09002 * 109.46690 * 300.00079 * 10 9 7 31 31 H 1.08992 * 110.67318 * 278.58710 * 12 11 10 32 32 H 1.08999 * 110.66704 * 41.72696 * 12 11 10 33 33 H 1.08998 * 110.69703 * 80.97571 * 13 12 11 34 34 H 1.09004 * 110.69111 * 204.01146 * 13 12 11 35 35 H 1.09005 * 110.69406 * 18.10772 * 18 16 11 36 36 H 1.08997 * 110.84923 * 254.96961 * 18 16 11 37 37 H 1.09005 * 110.66811 * 204.14650 * 19 18 16 38 38 H 1.08999 * 110.81234 * 81.07754 * 19 18 16 39 39 H 1.09000 * 110.01685 * 55.90196 * 21 20 14 40 40 H 1.08998 * 110.48293 * 335.77930 * 22 21 20 41 41 H 1.09001 * 110.49024 * 98.42662 * 22 21 20 42 42 H 1.09004 * 110.75377 * 279.62477 * 23 22 21 43 43 H 1.09001 * 110.75934 * 156.25631 * 23 22 21 44 44 H 1.09010 * 110.48474 * 203.38417 * 24 23 22 45 45 H 1.08998 * 110.48270 * 80.73796 * 24 23 22 46 46 H 1.08996 * 110.02961 * 238.56824 * 25 21 20 47 47 H 1.09003 * 110.03151 * 359.95235 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5108 -4.9342 0.0045 12 6 0.5147 -4.9752 -1.0963 13 6 0.2348 -6.4893 -1.2642 14 6 1.6410 -7.1367 -1.0420 15 1 2.1470 -7.3883 -1.9741 16 6 2.4229 -6.0729 -0.2342 17 1 3.3304 -5.7600 -0.7508 18 6 2.7401 -6.7503 1.1178 19 6 2.6315 -8.2598 0.7874 20 7 1.4937 -8.3177 -0.1651 21 6 1.5244 -9.5610 -0.9470 22 6 0.2941 -9.6322 -1.8750 23 6 -0.1011 -11.1298 -1.8674 24 6 0.1573 -11.5441 -0.3975 25 6 1.4374 -10.7767 -0.0076 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5574 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 2.8720 -3.6035 0.8927 30 1 2.8720 -3.6051 -0.8873 31 1 -0.3943 -4.4450 -0.8125 32 1 0.9351 -4.5578 -2.0113 33 1 -0.4777 -6.8348 -0.5152 34 1 -0.1295 -6.7046 -2.2688 35 1 2.0058 -6.4673 1.8721 36 1 3.7476 -6.5003 1.4501 37 1 2.4106 -8.8354 1.6863 38 1 3.5462 -8.6199 0.3166 39 1 2.4404 -9.6090 -1.5358 40 1 -0.5176 -9.0215 -1.4798 41 1 0.5576 -9.3123 -2.8831 42 1 0.5326 -11.7000 -2.5467 43 1 -1.1533 -11.2530 -2.1242 44 1 0.3211 -12.6196 -0.3275 45 1 -0.6766 -11.2421 0.2361 46 1 2.3108 -11.4149 -0.1412 47 1 1.3732 -10.4441 1.0285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277942971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:05 Heat of formation + Delta-G solvation = -1.743640 kcal Electronic energy + Delta-G solvation = -22591.101903 eV Core-core repulsion = 19579.648230 eV Total energy + Delta-G solvation = -3011.453673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.19158 -37.97573 -35.48723 -33.16364 -31.77304 -30.84594 -28.96932 -28.15865 -26.93911 -26.18920 -24.02361 -21.77494 -21.54256 -20.71042 -19.85377 -19.51625 -19.25823 -16.60324 -16.39337 -16.04752 -15.12912 -14.86982 -14.48905 -14.36757 -13.96135 -13.68098 -13.52164 -13.40547 -12.84511 -12.65338 -12.27559 -11.97004 -11.59396 -11.35704 -11.30565 -11.25022 -11.14916 -10.99170 -10.92812 -10.80600 -10.76970 -10.70408 -10.62062 -10.46370 -10.39880 -10.38382 -9.87901 -9.29111 -9.10764 -8.40066 -8.33537 -7.77088 -5.98393 -4.00725 3.32545 3.38806 3.42224 3.89417 4.34837 4.40556 4.49656 4.50275 4.71707 4.82553 4.90342 5.20308 5.23063 5.27190 5.32285 5.35706 5.37548 5.40160 5.49639 5.55049 5.59140 5.66821 5.71282 5.73128 5.78507 5.84146 5.91397 5.97336 6.00351 6.09409 6.13527 6.18418 6.21411 6.31383 6.36112 6.45481 6.52958 6.62505 6.93340 7.01496 7.19648 7.53062 7.57274 7.77441 7.89950 8.08783 8.45068 9.06271 9.62819 11.12958 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.041739 B = 0.003317 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.671670 B = 8440.235185 C = 8840.964703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.053 3.947 11 N -0.503 5.503 12 C 0.040 3.960 13 C -0.104 4.104 14 C 0.059 3.941 15 H 0.059 0.941 16 C 0.055 3.945 17 H 0.056 0.944 18 C -0.108 4.108 19 C 0.036 3.964 20 N -0.497 5.497 21 C 0.071 3.929 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.118 4.118 26 H 0.260 0.740 27 H 0.018 0.982 28 H 0.024 0.976 29 H 0.061 0.939 30 H 0.019 0.981 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 -22.698 -2.583 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.074 4.074 11 N -0.227 5.227 12 C -0.088 4.088 13 C -0.143 4.143 14 C -0.050 4.050 15 H 0.077 0.923 16 C -0.055 4.055 17 H 0.074 0.926 18 C -0.147 4.147 19 C -0.092 4.092 20 N -0.221 5.221 21 C -0.038 4.038 22 C -0.155 4.155 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.156 4.156 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.374 -22.604 -1.787 22.716 hybrid contribution 1.815 1.094 -1.320 2.497 sum 3.190 -21.510 -3.107 21.966 Atomic orbital electron populations 1.69969 1.06003 1.26554 1.50696 1.24992 0.94834 0.99154 0.95330 0.86603 0.79868 0.83542 0.78031 1.20744 1.21179 1.19900 1.21192 0.92956 0.91091 1.50806 0.92851 1.19139 0.93982 0.90296 0.97795 1.22508 0.97109 0.88933 0.98858 1.64993 1.12790 1.02652 1.42291 1.23173 0.97420 0.95147 0.93017 1.22842 0.95813 0.94676 1.00958 1.23539 0.96796 0.90361 0.94281 0.92262 1.23216 0.94832 0.92202 0.95284 0.92618 1.22489 1.01613 0.92702 0.97868 1.23234 0.91791 0.97551 0.96609 1.65012 1.41384 1.00779 1.14911 1.22482 0.97275 0.90230 0.93840 1.22455 0.98054 0.96579 0.98371 1.22469 1.01002 0.96036 0.96699 1.22300 0.97878 0.99132 0.96456 1.22209 0.97718 0.95420 1.00283 0.93006 0.96391 0.95737 0.92032 0.96291 0.89524 0.94177 0.89707 0.92190 0.89237 0.91789 0.90215 0.94418 0.94359 0.89927 0.92204 0.91911 0.91565 0.92099 0.91371 0.92277 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.66 4.63 -27.88 -0.13 0.53 16 10 C 0.05 1.15 4.96 -3.82 -0.02 1.13 16 11 N -0.50 -9.40 4.88 -221.23 -1.08 -10.48 16 12 C 0.04 0.71 5.10 -1.93 -0.01 0.70 16 13 C -0.10 -1.48 5.51 -23.91 -0.13 -1.62 16 14 C 0.06 0.80 3.04 -64.44 -0.20 0.61 16 15 H 0.06 0.78 7.77 -51.93 -0.40 0.37 16 16 C 0.05 0.84 3.33 -65.47 -0.22 0.63 16 17 H 0.06 0.88 7.65 -51.93 -0.40 0.48 16 18 C -0.11 -1.49 6.75 -24.94 -0.17 -1.66 16 19 C 0.04 0.42 5.72 -1.93 -0.01 0.41 16 20 N -0.50 -6.08 4.54 -210.82 -0.96 -7.04 16 21 C 0.07 0.74 2.36 -66.59 -0.16 0.58 16 22 C -0.12 -1.14 5.56 -25.07 -0.14 -1.28 16 23 C -0.12 -1.01 6.91 -24.74 -0.17 -1.18 16 24 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 25 C -0.12 -1.07 6.07 -25.61 -0.16 -1.23 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.02 0.49 6.79 -51.93 -0.35 0.14 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.02 0.41 7.87 -51.93 -0.41 0.00 16 31 H 0.09 1.66 7.64 -51.93 -0.40 1.26 16 32 H 0.04 0.73 8.01 -51.93 -0.42 0.31 16 33 H 0.08 1.26 8.02 -51.93 -0.42 0.85 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.38 7.98 -51.93 -0.41 0.97 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.85 7.20 -51.93 -0.37 0.48 16 38 H 0.04 0.41 8.02 -51.93 -0.42 0.00 16 39 H 0.04 0.41 8.05 -51.93 -0.42 -0.01 16 40 H 0.08 0.90 7.15 -51.93 -0.37 0.53 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.73 6.62 -51.93 -0.34 0.39 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -29.64 351.14 -12.02 -41.66 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -8.90 Total: -2.72 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.09 Total: -17.21 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -1.30 Total: -43.85 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.64 -12.02 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277942971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.916 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds