Wall clock time and date at job start Tue Mar 31 2020 00:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99975 * 2 1 4 4 H 1.48498 * 109.47290 * 269.99969 * 3 2 1 5 5 H 1.48500 * 109.46986 * 29.99894 * 3 2 1 6 6 H 1.48501 * 109.46983 * 149.99625 * 3 2 1 7 7 C 1.37879 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99946 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99612 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47039 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47108 * 179.97438 * 10 9 7 12 12 C 1.48519 * 110.99835 * 52.57905 * 11 10 9 13 13 C 1.54896 * 103.20589 * 160.15501 * 12 11 10 14 14 C 1.56391 * 103.10883 * 322.15780 * 13 12 11 15 15 H 1.09000 * 113.04496 * 260.64350 * 14 13 12 16 16 C 1.47834 * 111.00093 * 169.99620 * 11 10 9 17 17 H 1.09003 * 111.65603 * 336.82423 * 16 11 10 18 18 C 1.54516 * 108.84760 * 100.58552 * 16 11 10 19 19 C 1.54896 * 103.07292 * 136.50127 * 18 16 11 20 20 N 1.47831 * 108.98477 * 135.85595 * 14 13 12 21 21 C 1.46906 * 110.99923 * 101.56513 * 20 14 13 22 22 C 1.54270 * 110.03070 * 294.46306 * 21 20 14 23 23 C 1.54886 * 104.19394 * 217.10670 * 22 21 20 24 24 C 1.54893 * 102.74991 * 37.94007 * 23 22 21 25 25 C 1.53873 * 110.03251 * 177.29412 * 21 20 14 26 26 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47091 * 59.99982 * 9 7 2 28 28 H 1.09002 * 109.47444 * 299.99871 * 9 7 2 29 29 H 1.09000 * 109.46947 * 59.99802 * 10 9 7 30 30 H 1.09002 * 109.46690 * 300.00079 * 10 9 7 31 31 H 1.08992 * 110.67318 * 278.58710 * 12 11 10 32 32 H 1.08999 * 110.66704 * 41.72696 * 12 11 10 33 33 H 1.08998 * 110.69703 * 80.97571 * 13 12 11 34 34 H 1.09004 * 110.69111 * 204.01146 * 13 12 11 35 35 H 1.09005 * 110.69406 * 18.10772 * 18 16 11 36 36 H 1.08997 * 110.84923 * 254.96961 * 18 16 11 37 37 H 1.09005 * 110.66811 * 204.14650 * 19 18 16 38 38 H 1.08999 * 110.81234 * 81.07754 * 19 18 16 39 39 H 1.09000 * 110.01685 * 55.90196 * 21 20 14 40 40 H 1.08998 * 110.48293 * 335.77930 * 22 21 20 41 41 H 1.09001 * 110.49024 * 98.42662 * 22 21 20 42 42 H 1.09004 * 110.75377 * 279.62477 * 23 22 21 43 43 H 1.09001 * 110.75934 * 156.25631 * 23 22 21 44 44 H 1.09010 * 110.48474 * 203.38417 * 24 23 22 45 45 H 1.08998 * 110.48270 * 80.73796 * 24 23 22 46 46 H 1.08996 * 110.02961 * 238.56824 * 25 21 20 47 47 H 1.09003 * 110.03151 * 359.95235 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5108 -4.9342 0.0045 12 6 0.5147 -4.9752 -1.0963 13 6 0.2348 -6.4893 -1.2642 14 6 1.6410 -7.1367 -1.0420 15 1 2.1470 -7.3883 -1.9741 16 6 2.4229 -6.0729 -0.2342 17 1 3.3304 -5.7600 -0.7508 18 6 2.7401 -6.7503 1.1178 19 6 2.6315 -8.2598 0.7874 20 7 1.4937 -8.3177 -0.1651 21 6 1.5244 -9.5610 -0.9470 22 6 0.2941 -9.6322 -1.8750 23 6 -0.1011 -11.1298 -1.8674 24 6 0.1573 -11.5441 -0.3975 25 6 1.4374 -10.7767 -0.0076 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5574 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 2.8720 -3.6035 0.8927 30 1 2.8720 -3.6051 -0.8873 31 1 -0.3943 -4.4450 -0.8125 32 1 0.9351 -4.5578 -2.0113 33 1 -0.4777 -6.8348 -0.5152 34 1 -0.1295 -6.7046 -2.2688 35 1 2.0058 -6.4673 1.8721 36 1 3.7476 -6.5003 1.4501 37 1 2.4106 -8.8354 1.6863 38 1 3.5462 -8.6199 0.3166 39 1 2.4404 -9.6090 -1.5358 40 1 -0.5176 -9.0215 -1.4798 41 1 0.5576 -9.3123 -2.8831 42 1 0.5326 -11.7000 -2.5467 43 1 -1.1533 -11.2530 -2.1242 44 1 0.3211 -12.6196 -0.3275 45 1 -0.6766 -11.2421 0.2361 46 1 2.3108 -11.4149 -0.1412 47 1 1.3732 -10.4441 1.0285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277942971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:04 Heat of formation + Delta-G solvation = -19.487668 kcal Electronic energy + Delta-G solvation = -22591.871342 eV Core-core repulsion = 19579.648230 eV Total energy + Delta-G solvation = -3012.223112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29780 -38.99511 -36.72510 -35.14688 -33.17235 -32.22625 -29.94626 -29.54857 -28.08689 -27.23405 -25.89874 -23.39161 -22.53463 -21.54363 -21.32728 -20.52930 -20.36528 -18.53832 -17.55394 -17.06524 -16.55712 -16.25113 -15.93378 -15.69342 -15.23864 -14.90425 -14.68531 -14.32992 -14.11922 -14.08034 -13.77824 -13.43522 -13.09441 -12.88458 -12.62202 -12.48641 -12.39761 -12.24653 -12.00104 -11.88874 -11.84407 -11.79371 -11.74148 -11.63195 -11.58926 -11.48159 -11.35286 -11.24644 -11.16654 -10.57193 -9.39039 -9.25813 -8.21497 -6.33292 1.38641 1.40462 1.51663 2.39026 2.93817 3.11529 3.11681 3.42276 3.62849 3.78960 3.82083 4.02784 4.12655 4.25508 4.27657 4.33986 4.37428 4.47849 4.50999 4.52787 4.60049 4.64906 4.68335 4.74781 4.81479 4.86641 4.93240 4.98156 5.00352 5.04776 5.05901 5.08738 5.11759 5.21984 5.23640 5.28708 5.35497 5.41337 5.44441 5.54955 5.63086 5.77794 5.94884 6.04991 6.21685 6.28631 6.33715 6.83295 7.35811 8.90559 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.041739 B = 0.003317 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.671670 B = 8440.235185 C = 8840.964703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.036 3.964 10 C 0.071 3.929 11 N -0.515 5.515 12 C 0.038 3.962 13 C -0.090 4.090 14 C 0.069 3.931 15 H 0.071 0.929 16 C 0.048 3.952 17 H 0.056 0.944 18 C -0.106 4.106 19 C 0.044 3.956 20 N -0.506 5.506 21 C 0.069 3.931 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.264 0.736 27 H -0.003 1.003 28 H -0.010 1.010 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -24.208 -3.071 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.057 4.057 11 N -0.239 5.239 12 C -0.090 4.090 13 C -0.129 4.129 14 C -0.040 4.040 15 H 0.089 0.911 16 C -0.061 4.061 17 H 0.074 0.926 18 C -0.145 4.145 19 C -0.083 4.083 20 N -0.230 5.230 21 C -0.040 4.040 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.154 4.154 26 H 0.073 0.927 27 H 0.015 0.985 28 H 0.008 0.992 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.827 -24.140 -2.274 24.411 hybrid contribution 1.319 1.537 -1.158 2.333 sum 4.146 -22.604 -3.432 23.236 Atomic orbital electron populations 1.70108 1.07815 1.27816 1.51314 1.25972 0.95775 1.03344 0.94560 0.85422 0.78647 0.78291 0.78528 1.19682 1.20608 1.18745 1.21614 0.93465 0.92312 1.51075 0.92299 1.18940 0.94136 0.92042 0.95043 1.22140 0.95788 0.88979 0.98755 1.64949 1.13513 1.02297 1.43095 1.23133 0.96099 0.97563 0.92194 1.22723 0.96442 0.91763 1.01937 1.23422 0.95588 0.90374 0.94649 0.91106 1.23350 0.94391 0.91448 0.96930 0.92613 1.22446 1.01520 0.94259 0.96240 1.23202 0.92194 0.95858 0.97061 1.65004 1.41906 1.01063 1.15043 1.22576 0.97597 0.89693 0.94097 1.22450 0.97326 0.97590 0.98221 1.22460 1.01549 0.94872 0.96901 1.22299 0.97187 0.99903 0.96261 1.22197 0.98678 0.95025 0.99450 0.92709 0.98498 0.99155 0.92129 0.96215 0.92135 0.94990 0.90389 0.90151 0.91282 0.90758 0.89004 0.93003 0.94104 0.91382 0.91967 0.90907 0.91080 0.90674 0.92152 0.91022 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.76 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 1.97 4.63 29.85 0.14 2.11 16 10 C 0.07 3.18 4.96 86.31 0.43 3.61 16 11 N -0.51 -19.73 4.88 -853.85 -4.17 -23.89 16 12 C 0.04 1.40 5.10 86.64 0.44 1.84 16 13 C -0.09 -2.53 5.51 32.42 0.18 -2.36 16 14 C 0.07 1.78 3.04 46.52 0.14 1.92 16 15 H 0.07 1.69 7.77 -2.39 -0.02 1.68 16 16 C 0.05 1.46 3.33 45.86 0.15 1.61 16 17 H 0.06 1.71 7.65 -2.39 -0.02 1.69 16 18 C -0.11 -2.81 6.75 31.76 0.21 -2.60 16 19 C 0.04 0.93 5.72 86.64 0.50 1.43 16 20 N -0.51 -11.48 4.54 -820.91 -3.73 -15.21 16 21 C 0.07 1.27 2.36 45.64 0.11 1.37 16 22 C -0.12 -2.06 5.56 31.67 0.18 -1.88 16 23 C -0.12 -1.66 6.91 31.89 0.22 -1.44 16 24 C -0.12 -1.66 6.83 31.67 0.22 -1.44 16 25 C -0.12 -1.79 6.07 31.32 0.19 -1.60 16 26 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 27 H 0.00 -0.19 6.79 -2.39 -0.02 -0.21 16 28 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.02 0.87 7.87 -2.39 -0.02 0.85 16 31 H 0.06 2.49 7.64 -2.39 -0.02 2.47 16 32 H 0.03 1.20 8.01 -2.39 -0.02 1.19 16 33 H 0.08 2.32 8.02 -2.39 -0.02 2.30 16 34 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.07 2.13 7.98 -2.38 -0.02 2.11 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 1.74 7.20 -2.38 -0.02 1.73 16 38 H 0.05 0.97 8.02 -2.39 -0.02 0.95 16 39 H 0.04 0.75 8.05 -2.39 -0.02 0.73 16 40 H 0.07 1.40 7.15 -2.39 -0.02 1.38 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 1.17 6.62 -2.39 -0.02 1.15 16 Total: -1.00 -64.76 351.14 -0.89 -65.65 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.90 Total: 12.58 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 3.80 Total: -28.64 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -7.61 Total: -96.58 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.76 -0.89 -65.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277942971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.163 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds