Wall clock time and date at job start Tue Mar 31 2020 00:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99690 * 2 1 4 4 H 1.48504 * 109.47100 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47592 * 300.00559 * 3 2 1 6 6 H 1.48504 * 109.47006 * 60.00566 * 3 2 1 7 7 C 1.37874 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46709 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46906 * 179.97438 * 10 9 7 12 12 C 1.46961 * 111.00269 * 294.80724 * 11 10 9 13 13 C 1.53771 * 108.96797 * 180.22841 * 12 11 10 14 14 H 1.09001 * 112.85481 * 187.75696 * 13 12 11 15 15 C 1.54703 * 107.62848 * 312.37109 * 13 12 11 16 16 C 1.54328 * 104.71574 * 87.27796 * 15 13 12 17 17 C 1.54694 * 104.72629 * 0.02562 * 16 15 13 18 18 H 1.09007 * 112.96744 * 148.14068 * 17 16 15 19 19 C 1.46959 * 111.00183 * 169.99704 * 11 10 9 20 20 N 1.48858 * 106.93925 * 63.60037 * 13 12 11 21 21 C 1.46900 * 111.00478 * 170.24192 * 20 13 12 22 22 C 1.54268 * 110.03100 * 297.65621 * 21 20 13 23 23 C 1.54966 * 104.16177 * 217.12980 * 22 21 20 24 24 C 1.54893 * 102.77277 * 37.88848 * 23 22 21 25 25 C 1.53874 * 110.03667 * 180.43869 * 21 20 13 26 26 H 0.97001 * 120.00440 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47039 * 60.00317 * 9 7 2 28 28 H 1.08996 * 109.46571 * 299.99971 * 9 7 2 29 29 H 1.08996 * 109.47436 * 299.99264 * 10 9 7 30 30 H 1.09000 * 109.47511 * 59.99820 * 10 9 7 31 31 H 1.09003 * 109.55166 * 300.07553 * 12 11 10 32 32 H 1.08994 * 109.55175 * 60.37953 * 12 11 10 33 33 H 1.08993 * 110.38720 * 206.08498 * 15 13 12 34 34 H 1.08993 * 110.38839 * 328.47069 * 15 13 12 35 35 H 1.09002 * 110.38861 * 241.19263 * 16 15 13 36 36 H 1.09000 * 110.38660 * 118.81856 * 16 15 13 37 37 H 1.08992 * 109.55538 * 299.61788 * 19 11 10 38 38 H 1.08995 * 109.55056 * 59.92916 * 19 11 10 39 39 H 1.08999 * 110.01481 * 59.04163 * 21 20 13 40 40 H 1.09002 * 110.49082 * 335.78342 * 22 21 20 41 41 H 1.09011 * 110.48629 * 98.42432 * 22 21 20 42 42 H 1.08992 * 110.72184 * 279.58071 * 23 22 21 43 43 H 1.08998 * 110.92058 * 156.29480 * 23 22 21 44 44 H 1.08998 * 110.48626 * 203.40371 * 24 23 22 45 45 H 1.09003 * 110.48379 * 80.75856 * 24 23 22 46 46 H 1.08996 * 110.03181 * 238.57330 * 25 21 20 47 47 H 1.08999 * 110.02977 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 0.7494 -5.1022 1.2458 13 6 0.0055 -6.4472 1.1993 14 1 -0.6859 -6.5776 2.0318 15 6 -0.6999 -6.5452 -0.1741 16 6 0.3588 -7.1567 -1.1158 17 6 1.6032 -7.3709 -0.2222 18 1 2.1982 -8.2340 -0.5212 19 6 2.4176 -6.0659 -0.2382 20 7 1.0419 -7.5145 1.1487 21 6 0.4403 -8.8418 1.3344 22 6 -0.2168 -8.9340 2.7271 23 6 0.0658 -10.3876 3.1841 24 6 1.5001 -10.6398 2.6565 25 6 1.5312 -9.9261 1.2892 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5570 0.8897 29 1 2.8719 -3.6043 -0.8905 30 1 2.8721 -3.6042 0.8894 31 1 1.4326 -5.0923 2.0951 32 1 0.0293 -4.2901 1.3454 33 1 -1.5710 -7.1970 -0.1078 34 1 -0.9914 -5.5545 -0.5228 35 1 0.5883 -6.4669 -1.9280 36 1 0.0086 -8.1094 -1.5132 37 1 2.9001 -5.9488 -1.2084 38 1 3.1742 -6.0985 0.5457 39 1 -0.3023 -9.0267 0.5582 40 1 0.2422 -8.2224 3.4134 41 1 -1.2901 -8.7578 2.6549 42 1 -0.6412 -11.0798 2.7270 43 1 0.0343 -10.4670 4.2707 44 1 1.6789 -11.7079 2.5334 45 1 2.2368 -10.2038 3.3312 46 1 1.3176 -10.6376 0.4916 47 1 2.5070 -9.4675 1.1291 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277943317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:21 Heat of formation + Delta-G solvation = 1.339759 kcal Electronic energy + Delta-G solvation = -23017.752228 eV Core-core repulsion = 20006.432260 eV Total energy + Delta-G solvation = -3011.319967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.72672 -37.70894 -35.27596 -32.84811 -31.22130 -30.69990 -29.57048 -28.71697 -27.17756 -25.15524 -24.25229 -23.08059 -21.11751 -20.39904 -19.91694 -19.52376 -18.46132 -16.91348 -16.26520 -16.01013 -14.98876 -14.78381 -14.50413 -14.19991 -13.93419 -13.53346 -13.47095 -13.36588 -12.93896 -12.48884 -12.38689 -11.99662 -11.84226 -11.51404 -11.28642 -11.19003 -11.12097 -10.93187 -10.92534 -10.89695 -10.78962 -10.61241 -10.46686 -10.39675 -10.21571 -10.06028 -9.77340 -9.30162 -9.07059 -8.38217 -8.30719 -7.58355 -5.97403 -3.99267 3.32599 3.40030 3.44170 3.97361 4.42005 4.42882 4.54111 4.59465 4.80784 4.98096 4.99452 5.14029 5.29879 5.32816 5.38728 5.40565 5.45894 5.49770 5.54288 5.58642 5.66073 5.71670 5.76013 5.81365 5.86936 5.90969 5.92797 6.08448 6.12332 6.17406 6.18750 6.22367 6.25788 6.36668 6.43628 6.49571 6.55827 6.63185 6.99445 7.03486 7.23894 7.59755 7.66554 7.85710 7.94713 8.12036 8.47312 9.08291 9.64287 11.13978 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.035592 B = 0.003601 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.500792 B = 7773.224436 C = 7851.178047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.065 3.935 11 N -0.536 5.536 12 C 0.070 3.930 13 C 0.060 3.940 14 H 0.093 0.907 15 C -0.133 4.133 16 C -0.130 4.130 17 C 0.059 3.941 18 H 0.091 0.909 19 C 0.067 3.933 20 N -0.500 5.500 21 C 0.069 3.931 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.117 4.117 26 H 0.259 0.741 27 H 0.023 0.977 28 H 0.016 0.984 29 H 0.059 0.941 30 H 0.018 0.982 31 H 0.034 0.966 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -21.281 2.900 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.062 4.062 11 N -0.260 5.260 12 C -0.059 4.059 13 C -0.048 4.048 14 H 0.111 0.889 15 C -0.172 4.172 16 C -0.169 4.169 17 C -0.049 4.049 18 H 0.109 0.891 19 C -0.062 4.062 20 N -0.223 5.223 21 C -0.040 4.040 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.158 4.158 25 C -0.155 4.155 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.012 -21.098 2.954 21.304 hybrid contribution 0.361 0.842 -0.026 0.917 sum 0.349 -20.255 2.928 20.469 Atomic orbital electron populations 1.69980 1.05992 1.26388 1.50923 1.24986 0.94822 0.99137 0.95385 0.86559 0.80118 0.83910 0.77542 1.19788 1.21033 1.21060 1.21247 0.93014 0.91119 1.50501 0.92810 1.19081 0.93972 0.90126 0.97648 1.22291 0.96667 0.88397 0.98814 1.62024 1.27031 1.02266 1.34727 1.22201 0.97375 0.95521 0.90761 1.23244 0.92497 0.91971 0.97132 0.88913 1.22693 0.97089 1.01925 0.95469 1.22662 0.95401 0.99518 0.99364 1.23223 0.96277 0.97422 0.88022 0.89076 1.22189 0.93801 0.89928 1.00280 1.65886 1.27905 1.02159 1.26337 1.22352 0.95130 0.89688 0.96781 1.22437 0.99690 0.97015 0.96353 1.22464 0.96772 0.96538 1.00333 1.22296 0.97117 0.99581 0.96763 1.22182 0.99592 0.96541 0.97171 0.93115 0.95843 0.96553 0.92290 0.96342 0.94784 0.89522 0.93310 0.89797 0.90210 0.93341 0.91040 0.94823 0.93681 0.90477 0.92072 0.91859 0.91687 0.92129 0.91532 0.92307 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.76 4.88 -27.88 -0.14 0.62 16 10 C 0.06 1.39 4.91 -3.83 -0.02 1.37 16 11 N -0.54 -9.72 3.62 -233.50 -0.85 -10.56 16 12 C 0.07 1.21 4.76 -3.39 -0.02 1.20 16 13 C 0.06 0.86 3.56 -65.33 -0.23 0.62 16 14 H 0.09 1.23 7.06 -51.93 -0.37 0.86 16 15 C -0.13 -1.86 5.46 -25.14 -0.14 -2.00 16 16 C -0.13 -1.73 5.43 -25.14 -0.14 -1.87 16 17 C 0.06 0.78 3.43 -65.31 -0.22 0.55 16 18 H 0.09 1.06 6.86 -51.93 -0.36 0.71 16 19 C 0.07 1.03 5.03 -3.36 -0.02 1.01 16 20 N -0.50 -6.56 4.75 -203.37 -0.97 -7.52 16 21 C 0.07 0.77 2.35 -66.59 -0.16 0.61 16 22 C -0.12 -1.19 5.14 -25.03 -0.13 -1.32 16 23 C -0.12 -1.05 6.91 -24.69 -0.17 -1.22 16 24 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 25 C -0.12 -1.14 5.84 -25.62 -0.15 -1.29 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.02 0.45 6.54 -51.93 -0.34 0.11 16 29 H 0.06 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.67 6.47 -51.93 -0.34 1.33 16 33 H 0.05 0.62 8.03 -51.93 -0.42 0.20 16 34 H 0.08 1.37 7.80 -51.93 -0.41 0.96 16 35 H 0.08 1.17 7.81 -51.93 -0.41 0.76 16 36 H 0.05 0.58 7.96 -51.93 -0.41 0.16 16 37 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.52 6.74 -51.93 -0.35 0.17 16 40 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 41 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.78 7.05 -51.93 -0.37 0.41 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -29.24 345.62 -11.78 -41.02 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.78 Total: -2.21 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.11 Total: -16.50 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -1.08 Total: -44.30 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.24 -11.78 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.358 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds