Wall clock time and date at job start Tue Mar 31 2020 00:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.76873 * 2 1 4 4 C 1.55147 * 110.70909 * 236.80218 * 2 1 3 5 5 C 1.54903 * 101.65492 * 205.96419 * 4 2 1 6 6 N 1.47846 * 104.79767 * 37.06951 * 5 4 2 7 7 C 1.38570 * 111.00262 * 213.63831 * 6 5 4 8 8 N 1.31223 * 126.47377 * 22.03473 * 7 6 5 9 9 N 1.28525 * 109.86349 * 180.02562 * 8 7 6 10 10 C 1.30293 * 110.05133 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.34479 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47038 * 90.02866 * 11 10 9 13 13 C 1.50703 * 109.47038 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99803 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99884 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00019 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00116 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46813 * 90.00083 * 17 15 13 19 19 H 1.48502 * 109.47197 * 210.00308 * 17 15 13 20 20 H 1.48499 * 109.46930 * 330.00246 * 17 15 13 21 21 N 1.36454 * 126.47397 * 202.08197 * 7 6 5 22 22 C 1.46493 * 127.13642 * 359.93420 * 21 7 6 23 23 C 1.47452 * 108.56663 * 335.90514 * 6 5 4 24 24 H 1.08991 * 109.89028 * 120.39518 * 23 6 5 25 25 C 1.52996 * 109.88536 * 241.42301 * 23 6 5 26 26 H 1.09000 * 109.47669 * 296.79778 * 1 2 3 27 27 H 1.09001 * 109.46982 * 56.79813 * 1 2 3 28 28 H 1.09005 * 109.47436 * 176.79588 * 1 2 3 29 29 H 1.09001 * 110.98595 * 324.05809 * 4 2 1 30 30 H 1.09000 * 110.99163 * 87.83072 * 4 2 1 31 31 H 1.08993 * 110.37258 * 278.23914 * 5 4 2 32 32 H 1.09004 * 110.37370 * 155.89532 * 5 4 2 33 33 H 1.09000 * 109.46811 * 210.02204 * 11 10 9 34 34 H 1.08995 * 109.47037 * 330.02340 * 11 10 9 35 35 H 1.09005 * 109.47201 * 299.99511 * 12 11 10 36 36 H 1.09000 * 109.47362 * 59.99439 * 12 11 10 37 37 H 0.97000 * 119.99816 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.46762 * 90.00247 * 22 21 7 39 39 H 1.08998 * 109.47334 * 210.00026 * 22 21 7 40 40 H 1.08995 * 109.47616 * 330.00852 * 22 21 7 41 41 H 1.08999 * 109.47489 * 54.17686 * 25 23 6 42 42 H 1.09002 * 109.46582 * 174.17948 * 25 23 6 43 43 H 1.09001 * 109.47369 * 294.17261 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9165 1.0192 0.0000 4 6 2.0786 -0.7946 -1.2144 5 6 3.4651 -1.2466 -0.6920 6 7 3.2490 -1.5502 0.7387 7 6 4.3730 -1.2403 1.4875 8 7 5.3247 -0.4003 1.1548 9 7 6.2129 -0.3569 2.0827 10 6 5.8832 -1.1596 3.0546 11 6 6.6627 -1.3937 4.3230 12 6 6.2048 -0.4010 5.3935 13 6 6.9847 -0.6347 6.6617 14 1 7.7318 -1.4136 6.7003 15 6 6.7437 0.1452 7.7728 16 7 7.4246 -0.0584 8.8794 17 14 5.4509 1.4920 7.7060 18 1 4.1364 0.9371 8.1175 19 1 5.8341 2.5921 8.6271 20 1 5.3547 2.0174 6.3205 21 7 4.6998 -1.7516 2.7097 22 6 3.9397 -2.7303 3.4909 23 6 2.0756 -0.7905 1.2079 24 1 1.3132 -1.4763 1.5771 25 6 2.4909 0.1738 2.3207 26 1 -0.3634 0.4633 0.9173 27 1 -0.3633 0.5627 -0.8599 28 1 -0.3634 -1.0261 -0.0574 29 1 1.4459 -1.6539 -1.4367 30 1 2.1806 -0.1511 -2.0882 31 1 4.1930 -0.4430 -0.8037 32 1 3.7984 -2.1383 -1.2230 33 1 6.4894 -2.4113 4.6733 34 1 7.7256 -1.2528 4.1275 35 1 6.3780 0.6166 5.0432 36 1 5.1418 -0.5420 5.5889 37 1 7.2552 0.4905 9.6610 38 1 4.2651 -3.7368 3.2277 39 1 4.1113 -2.5593 4.5536 40 1 2.8772 -2.6233 3.2725 41 1 3.3120 0.7999 1.9713 42 1 1.6432 0.8036 2.5907 43 1 2.8133 -0.3949 3.1928 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338560020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:21 Heat of formation + Delta-G solvation = 80.531687 kcal Electronic energy + Delta-G solvation = -22588.962376 eV Core-core repulsion = 19477.536085 eV Total energy + Delta-G solvation = -3111.426291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.81926 -39.66309 -34.95367 -34.36446 -33.35957 -31.86006 -31.52690 -29.04174 -27.82720 -27.05911 -25.54459 -24.30291 -22.64916 -21.57548 -20.73388 -19.87261 -19.80334 -17.10569 -16.76083 -16.66999 -15.98200 -15.50399 -14.56667 -14.32329 -14.16950 -13.84624 -13.62340 -13.41003 -13.13199 -12.98390 -12.70080 -12.63990 -12.52810 -12.24365 -12.13609 -11.69458 -11.60819 -11.32106 -11.12991 -11.08497 -10.87161 -10.80103 -10.44123 -10.35002 -10.08825 -9.85580 -9.80238 -9.31186 -9.18734 -8.61132 -8.12134 -6.11639 -4.11045 2.03023 2.49400 3.17406 3.24675 3.34269 3.39765 3.73388 4.19633 4.38394 4.39208 4.47645 4.77911 4.91092 4.96015 5.07917 5.11231 5.14562 5.21401 5.22440 5.28758 5.30371 5.41171 5.46707 5.50728 5.55203 5.70623 5.72344 5.75091 5.79641 5.92797 6.01837 6.12914 6.20680 6.22172 6.31014 6.49049 6.58108 6.85193 7.10205 7.26920 7.40146 7.67750 8.42849 8.91874 9.11273 9.50120 11.01314 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.024964 B = 0.004608 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.360944 B = 6074.495165 C = 6639.271484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.051 3.949 6 N -0.451 5.451 7 C 0.339 3.661 8 N -0.324 5.324 9 N -0.294 5.294 10 C 0.206 3.794 11 C -0.022 4.022 12 C -0.003 4.003 13 C -0.523 4.523 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.265 1.265 21 N -0.475 5.475 22 C 0.078 3.922 23 C 0.080 3.920 24 H 0.093 0.907 25 C -0.175 4.175 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.008 0.992 37 H 0.264 0.736 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 -4.123 -17.496 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.100 0.900 4 C -0.162 4.162 5 C -0.076 4.076 6 N -0.176 5.176 7 C -0.018 4.018 8 N -0.169 5.169 9 N -0.133 5.133 10 C -0.062 4.062 11 C -0.062 4.062 12 C -0.042 4.042 13 C -0.561 4.561 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.702 3.298 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.190 1.190 21 N -0.169 5.169 22 C -0.065 4.065 23 C -0.028 4.028 24 H 0.111 0.889 25 C -0.233 4.233 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.650 -3.611 -18.044 23.521 hybrid contribution -1.328 0.456 0.895 1.665 sum -15.978 -3.154 -17.148 23.650 Atomic orbital electron populations 1.21731 0.93876 1.02098 1.01989 1.22435 0.96478 0.99667 0.94175 0.89969 1.22797 0.95776 1.00030 0.97553 1.23050 0.98070 1.01982 0.84464 1.60515 0.99647 1.54014 1.03428 1.22219 0.96643 0.96064 0.86826 1.74437 1.02588 1.16763 1.23066 1.74007 1.21154 1.19059 0.99087 1.25575 0.86165 0.94702 0.99719 1.20217 0.98397 1.01413 0.86174 1.19541 0.96102 0.94848 0.93680 1.21020 1.21731 1.19195 0.94150 0.90572 1.24957 0.95857 0.96913 0.95279 1.69897 1.41142 1.40253 1.02449 0.86847 0.82083 0.82347 0.78504 1.20359 1.21132 1.18959 1.46155 1.19675 1.34843 1.16201 1.22031 0.96387 0.91156 0.96907 1.22603 0.91276 0.93815 0.95077 0.88864 1.22419 1.02404 0.99891 0.98629 0.92440 0.92268 0.92259 0.90419 0.90179 0.90131 0.89749 0.90625 0.88697 0.95684 0.97413 0.92583 0.90268 0.88525 0.89627 0.91476 0.91369 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.14 37.16 0.34 -0.62 16 2 C -0.11 -0.96 3.07 -88.79 -0.27 -1.24 16 3 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 4 C -0.12 -1.01 6.52 -24.59 -0.16 -1.17 16 5 C 0.05 0.57 6.63 -2.30 -0.02 0.56 16 6 N -0.45 -5.76 5.20 -163.82 -0.85 -6.61 16 7 C 0.34 5.46 4.68 -318.88 -1.49 3.97 16 8 N -0.32 -6.17 10.34 30.31 0.31 -5.86 16 9 N -0.29 -6.15 12.18 32.99 0.40 -5.75 16 10 C 0.21 3.92 7.32 -154.01 -1.13 2.79 16 11 C -0.02 -0.43 5.36 -27.88 -0.15 -0.58 16 12 C 0.00 -0.07 4.02 -27.88 -0.11 -0.19 16 13 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 14 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 17 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 21 N -0.48 -7.64 2.46 -121.46 -0.30 -7.94 16 22 C 0.08 0.94 10.19 59.84 0.61 1.55 16 23 C 0.08 0.87 3.47 -66.72 -0.23 0.64 16 24 H 0.09 0.90 7.82 -51.93 -0.41 0.50 16 25 C -0.18 -2.30 7.88 37.16 0.29 -2.01 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16 29 H 0.08 0.56 8.02 -51.93 -0.42 0.14 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.06 6.80 -51.93 -0.35 0.71 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 34 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 35 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 36 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.19 7.88 -51.93 -0.41 0.78 16 40 H 0.09 0.88 7.68 -51.93 -0.40 0.48 16 41 H 0.07 1.08 6.94 -51.93 -0.36 0.72 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.88 5.90 -51.93 -0.31 0.57 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -32.48 338.76 -9.18 -41.66 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -7.20 Total: -2.06 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.75 Total: -9.07 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.34 Total: -52.52 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.48 -9.18 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338560020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.192 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds