Wall clock time and date at job start Tue Mar 31 2020 00:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.27434 * 2 1 4 4 C 1.54597 * 110.30787 * 122.08629 * 2 1 3 5 5 C 1.54934 * 102.92105 * 140.87122 * 4 2 1 6 6 N 1.48542 * 103.22837 * 322.58540 * 5 4 2 7 7 C 1.38579 * 111.00006 * 159.71789 * 6 5 4 8 8 N 1.31211 * 126.47530 * 242.62794 * 7 6 5 9 9 N 1.28522 * 109.86158 * 179.97438 * 8 7 6 10 10 C 1.30293 * 110.05611 * 0.02562 * 9 8 7 11 11 C 1.50702 * 126.34957 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46958 * 89.97391 * 11 10 9 13 13 C 1.50702 * 109.46958 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99728 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00300 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00287 * 179.97438 * 15 13 12 17 17 Si 1.86810 * 119.99776 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47034 * 89.99824 * 17 15 13 19 19 H 1.48502 * 109.47018 * 210.00172 * 17 15 13 20 20 H 1.48500 * 109.46815 * 329.99672 * 17 15 13 21 21 N 1.36452 * 126.47109 * 62.31778 * 7 6 5 22 22 C 1.46501 * 127.13670 * 0.03762 * 21 7 6 23 23 C 1.47899 * 105.81398 * 39.20669 * 6 5 4 24 24 H 1.09001 * 110.08372 * 94.11875 * 23 6 5 25 25 C 1.53001 * 109.91506 * 215.31678 * 23 6 5 26 26 H 1.09007 * 109.47075 * 299.36768 * 1 2 3 27 27 H 1.08997 * 109.47247 * 59.35992 * 1 2 3 28 28 H 1.08992 * 109.47255 * 179.36985 * 1 2 3 29 29 H 1.09000 * 110.72471 * 259.22520 * 4 2 1 30 30 H 1.09001 * 110.72634 * 22.51541 * 4 2 1 31 31 H 1.08997 * 110.67221 * 81.01962 * 5 4 2 32 32 H 1.09002 * 110.66998 * 204.14972 * 5 4 2 33 33 H 1.09000 * 109.46962 * 209.96843 * 11 10 9 34 34 H 1.08998 * 109.46831 * 329.97331 * 11 10 9 35 35 H 1.09000 * 109.46837 * 299.99529 * 12 11 10 36 36 H 1.08998 * 109.47398 * 60.00288 * 12 11 10 37 37 H 0.97006 * 119.99676 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.47630 * 90.00020 * 22 21 7 39 39 H 1.08998 * 109.47171 * 209.99629 * 22 21 7 40 40 H 1.08997 * 109.47232 * 329.99524 * 22 21 7 41 41 H 1.08993 * 109.47273 * 177.59506 * 25 23 6 42 42 H 1.09006 * 109.47242 * 297.59649 * 25 23 6 43 43 H 1.09003 * 109.47292 * 57.58667 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0666 -0.7702 1.2284 5 6 3.2854 -1.5342 0.6530 6 7 2.8312 -1.9244 -0.7064 7 6 3.9102 -2.2106 -1.5274 8 7 4.2473 -1.5728 -2.6234 9 7 5.3007 -2.1052 -3.1321 10 6 5.6947 -3.1063 -2.3972 11 6 6.8903 -3.9870 -2.6544 12 6 8.1202 -3.3909 -1.9668 13 6 9.3159 -4.2712 -2.2246 14 1 9.2092 -5.1662 -2.8196 15 6 10.5461 -3.9337 -1.7016 16 7 11.5894 -4.7023 -1.9261 17 14 10.7307 -2.3853 -0.6729 18 1 10.4893 -2.7088 0.7562 19 1 12.1049 -1.8456 -0.8331 20 1 9.7447 -1.3708 -1.1243 21 7 4.8263 -3.2054 -1.3456 22 6 4.8685 -4.1801 -0.2527 23 6 2.0645 -0.7696 -1.2220 24 1 2.7134 -0.1233 -1.8131 25 6 0.8968 -1.2606 -2.0802 26 1 -0.3633 0.5040 0.8957 27 1 -0.3633 0.5237 -0.8842 28 1 -0.3633 -1.0275 -0.0113 29 1 2.3792 -0.0787 2.0108 30 1 1.3172 -1.4667 1.6045 31 1 4.1563 -0.8814 0.5949 32 1 3.5046 -2.4171 1.2535 33 1 6.6994 -4.9839 -2.2570 34 1 7.0696 -4.0518 -3.7276 35 1 8.3111 -2.3940 -2.3642 36 1 7.9409 -3.3261 -0.8936 37 1 12.4550 -4.4645 -1.5584 38 1 4.2920 -5.0626 -0.5303 39 1 5.9024 -4.4670 -0.0613 40 1 4.4423 -3.7359 0.6469 41 1 0.3121 -0.4063 -2.4212 42 1 1.2830 -1.8040 -2.9426 43 1 0.2636 -1.9215 -1.4883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338560021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:24 Heat of formation + Delta-G solvation = 81.210302 kcal Electronic energy + Delta-G solvation = -22264.275376 eV Core-core repulsion = 19152.878512 eV Total energy + Delta-G solvation = -3111.396864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.71527 -39.73120 -35.00634 -34.54611 -33.38038 -31.89985 -31.58792 -28.90296 -27.69129 -26.79365 -25.54587 -25.11360 -22.33758 -21.66481 -20.95934 -20.12014 -18.90286 -17.63417 -16.89392 -16.14414 -15.92010 -15.59869 -14.73212 -14.66763 -14.31324 -14.00712 -13.67340 -13.42597 -13.16900 -12.88006 -12.80102 -12.65445 -12.46970 -12.24163 -11.75721 -11.64822 -11.59146 -11.29350 -11.11469 -11.09651 -10.85403 -10.64992 -10.44637 -10.38697 -10.09775 -9.90209 -9.81095 -9.40417 -9.31238 -8.61371 -8.05122 -6.11816 -4.11276 2.02457 2.46587 3.16564 3.24543 3.34205 3.39894 3.70787 4.19322 4.24951 4.39087 4.51007 4.70058 4.89892 4.91965 5.00221 5.08371 5.15279 5.21173 5.22742 5.27972 5.31657 5.39282 5.45230 5.48534 5.59401 5.61553 5.69603 5.70618 5.80629 5.91709 6.01985 6.17788 6.20166 6.23803 6.29960 6.47998 6.56375 6.82807 7.09916 7.26413 7.35822 7.67505 8.42654 8.91633 9.11969 9.49916 11.01109 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.029172 B = 0.004059 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.589131 B = 6897.087498 C = 7235.835404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.079 0.921 4 C -0.116 4.116 5 C 0.032 3.968 6 N -0.430 5.430 7 C 0.330 3.670 8 N -0.322 5.322 9 N -0.293 5.293 10 C 0.206 3.794 11 C -0.021 4.021 12 C -0.004 4.004 13 C -0.523 4.523 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.876 3.124 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.265 1.265 21 N -0.481 5.481 22 C 0.074 3.926 23 C 0.078 3.922 24 H 0.084 0.916 25 C -0.134 4.134 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.008 0.992 37 H 0.264 0.736 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.432 6.139 8.421 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.095 4.095 6 N -0.155 5.155 7 C -0.027 4.027 8 N -0.167 5.167 9 N -0.132 5.132 10 C -0.062 4.062 11 C -0.061 4.061 12 C -0.042 4.042 13 C -0.561 4.561 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.703 3.297 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.190 1.190 21 N -0.176 5.176 22 C -0.069 4.069 23 C -0.030 4.030 24 H 0.102 0.898 25 C -0.191 4.191 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.607 6.651 7.351 24.686 hybrid contribution 0.808 0.338 1.685 1.899 sum -21.799 6.989 9.036 24.611 Atomic orbital electron populations 1.21932 0.94013 1.02374 1.01636 1.22069 0.96846 0.99200 0.93910 0.90216 1.22580 0.96762 0.98826 0.97228 1.23427 0.97904 0.99863 0.88334 1.61523 1.14335 1.38215 1.01381 1.22633 0.91476 0.91197 0.97388 1.74439 1.10344 1.23289 1.08612 1.73995 1.06786 1.07931 1.24462 1.25573 0.95475 0.99403 0.85755 1.20215 0.87532 0.94830 1.03555 1.19547 0.92388 0.97541 0.94739 1.21019 0.91545 1.09801 1.33730 0.90562 1.24961 0.95784 0.96435 0.95866 1.69899 1.00309 1.38061 1.45478 0.86838 0.77702 0.84416 0.80763 1.20364 1.21110 1.18986 1.46075 1.22693 1.26342 1.22456 1.22157 1.05270 0.91482 0.88003 1.22439 0.95382 0.89341 0.95802 0.89767 1.21808 0.96806 1.01182 0.99315 0.92829 0.92117 0.91774 0.90390 0.90114 0.92538 0.89257 0.90626 0.88664 0.95664 0.97418 0.92576 0.90226 0.88342 0.89671 0.91719 0.92528 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 7.91 37.16 0.29 -0.66 16 2 C -0.10 -0.85 3.59 -89.26 -0.32 -1.17 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -0.90 6.61 -24.87 -0.16 -1.07 16 5 C 0.03 0.33 5.91 -1.89 -0.01 0.32 16 6 N -0.43 -5.52 4.95 -163.09 -0.81 -6.32 16 7 C 0.33 5.46 7.04 -318.89 -2.25 3.21 16 8 N -0.32 -6.30 10.70 30.31 0.32 -5.98 16 9 N -0.29 -6.26 12.18 32.99 0.40 -5.86 16 10 C 0.21 3.99 7.32 -154.02 -1.13 2.86 16 11 C -0.02 -0.42 5.36 -27.88 -0.15 -0.57 16 12 C 0.00 -0.08 4.02 -27.88 -0.11 -0.20 16 13 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 14 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 17 Si 0.88 21.59 27.47 -169.99 -4.67 16.93 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 21 N -0.48 -7.87 3.21 -121.46 -0.39 -8.26 16 22 C 0.07 0.88 10.84 59.85 0.65 1.53 16 23 C 0.08 0.90 2.85 -66.65 -0.19 0.71 16 24 H 0.08 1.18 6.85 -51.93 -0.36 0.82 16 25 C -0.13 -1.39 8.36 37.16 0.31 -1.08 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.39 6.90 -51.93 -0.36 0.03 16 28 H 0.06 0.44 6.62 -51.93 -0.34 0.09 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 31 H 0.06 0.68 7.99 -51.93 -0.42 0.26 16 32 H 0.09 0.80 6.00 -51.93 -0.31 0.49 16 33 H 0.08 1.34 7.95 -51.93 -0.41 0.93 16 34 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 35 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 36 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.20 7.91 -51.93 -0.41 0.79 16 40 H 0.08 0.82 5.37 -51.93 -0.28 0.54 16 41 H 0.06 0.55 6.87 -51.93 -0.36 0.20 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.59 6.64 -51.93 -0.35 0.25 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -33.11 335.06 -9.70 -42.81 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.89 Total: -3.01 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.50 Total: -8.94 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.30 Total: -52.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.11 -9.70 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338560021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.021 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds