Wall clock time and date at job start Tue Mar 31 2020 00:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.72701 * 2 1 4 4 C 1.54941 * 110.66464 * 236.90459 * 2 1 3 5 5 C 1.54596 * 102.91853 * 204.15475 * 4 2 1 6 6 H 1.09003 * 110.38709 * 262.99469 * 5 4 2 7 7 C 1.52999 * 110.30936 * 140.87556 * 5 4 2 8 8 C 1.53986 * 105.14200 * 21.95557 * 5 4 2 9 9 N 1.47896 * 107.05979 * 1.22738 * 8 5 4 10 10 C 1.38583 * 110.99946 * 214.15431 * 9 8 5 11 11 N 1.31217 * 126.47772 * 36.80424 * 10 9 8 12 12 N 1.28529 * 109.86418 * 179.69162 * 11 10 9 13 13 C 1.30296 * 110.05157 * 0.45217 * 12 11 10 14 14 C 1.50691 * 126.34671 * 179.81896 * 13 12 11 15 15 C 1.52994 * 109.47391 * 269.69043 * 14 13 12 16 16 C 1.50701 * 109.47381 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00163 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99966 * 179.72498 * 16 15 14 19 19 N 1.31520 * 119.99675 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00031 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47087 * 90.00143 * 20 18 16 22 22 H 1.48503 * 109.46988 * 210.00073 * 20 18 16 23 23 H 1.48496 * 109.47090 * 329.99723 * 20 18 16 24 24 N 1.36461 * 126.47101 * 216.75735 * 10 9 8 25 25 C 1.46493 * 127.13948 * 0.02562 * 24 10 9 26 26 H 1.08997 * 109.46947 * 298.35378 * 1 2 3 27 27 H 1.09003 * 109.47256 * 58.35558 * 1 2 3 28 28 H 1.08998 * 109.47236 * 178.35827 * 1 2 3 29 29 H 1.08998 * 110.72200 * 85.79299 * 4 2 1 30 30 H 1.09006 * 110.87511 * 322.57964 * 4 2 1 31 31 H 1.08999 * 109.46947 * 302.82738 * 7 5 4 32 32 H 1.09002 * 109.47241 * 62.82903 * 7 5 4 33 33 H 1.09001 * 109.47246 * 182.82721 * 7 5 4 34 34 H 1.09003 * 109.92311 * 241.87134 * 8 5 4 35 35 H 1.09008 * 109.91934 * 120.57987 * 8 5 4 36 36 H 1.08996 * 109.47257 * 149.68883 * 14 13 12 37 37 H 1.09001 * 109.47218 * 29.69117 * 14 13 12 38 38 H 1.09004 * 109.46919 * 59.99994 * 15 14 13 39 39 H 1.08998 * 109.47232 * 299.99743 * 15 14 13 40 40 H 0.96999 * 119.99454 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.46712 * 264.84180 * 25 24 10 42 42 H 1.09008 * 109.46949 * 24.83384 * 25 24 10 43 43 H 1.08996 * 109.47409 * 144.83806 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0768 -0.7916 -1.2145 5 6 3.4852 -1.2198 -0.7423 6 1 4.2385 -0.5272 -1.1178 7 6 3.7928 -2.6432 -1.2117 8 6 3.4278 -1.1648 0.7955 9 7 2.0543 -0.7590 1.1642 10 6 2.0579 0.0248 2.3071 11 7 2.9590 0.9201 2.6362 12 7 2.6457 1.4630 3.7583 13 6 1.5403 0.9439 4.2126 14 6 0.8456 1.3077 5.4993 15 6 1.3649 0.4162 6.6291 16 6 0.6696 0.7796 7.9158 17 1 -0.0685 1.5679 7.9268 18 6 0.9722 0.1023 9.0780 19 7 0.3658 0.4198 10.2010 20 14 2.2444 -1.2653 9.0578 21 1 3.5878 -0.6958 9.3337 22 1 1.9088 -2.2690 10.0996 23 1 2.2478 -1.9185 7.7242 24 7 1.1245 0.0119 3.3025 25 6 -0.0745 -0.8263 3.3799 26 1 -0.3633 0.4880 0.9044 27 1 -0.3634 0.5392 -0.8749 28 1 -0.3633 -1.0272 -0.0294 29 1 2.1430 -0.1513 -2.0941 30 1 1.4570 -1.6644 -1.4202 31 1 3.0262 -3.3223 -0.8388 32 1 3.8048 -2.6718 -2.3013 33 1 4.7666 -2.9494 -0.8295 34 1 4.1440 -0.4324 1.1680 35 1 3.6485 -2.1482 1.2108 36 1 -0.2286 1.1619 5.3861 37 1 1.0472 2.3518 5.7385 38 1 2.4392 0.5621 6.7424 39 1 1.1632 -0.6279 6.3900 40 1 0.5789 -0.0565 11.0187 41 1 -0.9290 -0.2751 2.9873 42 1 0.0761 -1.7310 2.7907 43 1 -0.2625 -1.0965 4.4189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338562539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:57 Heat of formation + Delta-G solvation = 54.744703 kcal Electronic energy + Delta-G solvation = -22198.473326 eV Core-core repulsion = 19085.928828 eV Total energy + Delta-G solvation = -3112.544498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.07435 -40.42557 -36.45064 -35.79766 -34.65888 -33.60359 -32.86984 -30.19943 -28.48970 -27.78042 -27.22066 -26.29142 -23.43066 -23.02072 -21.62329 -21.41964 -20.75432 -19.07542 -18.54385 -17.40800 -17.18628 -16.43315 -16.25638 -15.40859 -15.32213 -15.12039 -14.91796 -14.70255 -14.44298 -14.32014 -13.97138 -13.68902 -13.41592 -13.24165 -13.02483 -12.89627 -12.84078 -12.69613 -12.52405 -12.23907 -12.07763 -11.85068 -11.79277 -11.58047 -11.55595 -11.49414 -11.44656 -11.09446 -10.80155 -10.33723 -9.66765 -8.32241 -6.36134 0.66021 1.24817 1.31934 1.34386 1.43797 1.68995 2.31827 2.69492 3.03087 3.34369 3.47149 3.64035 3.76543 3.85572 4.05550 4.11636 4.18539 4.28536 4.32737 4.38302 4.49562 4.59726 4.61086 4.63653 4.70526 4.75236 4.76762 4.80939 4.91317 4.99237 5.02766 5.07909 5.17291 5.20461 5.24804 5.25677 5.38463 5.40589 5.47775 5.60930 5.63412 6.17071 6.22365 6.70863 7.28521 7.64690 8.83769 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.004035 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.020421 B = 6937.919923 C = 7297.369534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.064 3.936 3 H 0.042 0.958 4 C -0.102 4.102 5 C -0.096 4.096 6 H 0.082 0.918 7 C -0.136 4.136 8 C 0.044 3.956 9 N -0.435 5.435 10 C 0.339 3.661 11 N -0.353 5.353 12 N -0.330 5.330 13 C 0.196 3.804 14 C -0.009 4.009 15 C 0.005 3.995 16 C -0.527 4.527 17 H 0.049 0.951 18 C 0.016 3.984 19 N -0.943 5.943 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.277 1.277 23 H -0.256 1.256 24 N -0.465 5.465 25 C 0.071 3.929 26 H 0.035 0.965 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.007 0.993 39 H 0.020 0.980 40 H 0.268 0.732 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 -7.931 -27.189 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 H 0.060 0.940 4 C -0.139 4.139 5 C -0.115 4.115 6 H 0.100 0.900 7 C -0.193 4.193 8 C -0.083 4.083 9 N -0.162 5.162 10 C -0.019 4.019 11 N -0.197 5.197 12 N -0.170 5.170 13 C -0.073 4.073 14 C -0.049 4.049 15 C -0.034 4.034 16 C -0.565 4.565 17 H 0.067 0.933 18 C -0.182 4.182 19 N -0.583 5.583 20 Si 0.764 3.236 21 H -0.200 1.200 22 H -0.203 1.203 23 H -0.180 1.180 24 N -0.156 5.156 25 C -0.071 4.071 26 H 0.054 0.946 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.025 0.975 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.972 -7.583 -26.978 28.040 hybrid contribution 0.017 -0.317 0.948 1.000 sum 0.989 -7.900 -26.029 27.220 Atomic orbital electron populations 1.21741 0.92015 1.03560 1.01900 1.23054 0.97259 0.95415 0.88545 0.93995 1.22651 0.95018 1.00572 0.95701 1.21984 0.98281 0.99565 0.91684 0.89950 1.21793 1.01728 0.93888 1.01940 1.23083 0.86390 1.01155 0.97664 1.61754 1.22564 1.32914 0.98940 1.22807 0.89183 0.96913 0.92994 1.74353 1.25228 1.10216 1.09870 1.73927 1.12731 1.24209 1.06115 1.25321 0.94904 0.91554 0.95536 1.19955 0.98863 1.01370 0.84716 1.19378 0.95792 0.95390 0.92837 1.21295 1.23097 1.19291 0.92788 0.93291 1.25792 0.97889 0.99471 0.95050 1.70026 1.44470 1.43428 1.00366 0.85820 0.79525 0.79592 0.78644 1.20000 1.20286 1.17978 1.46319 1.22146 1.31274 1.15908 1.22394 0.83657 0.95360 1.05661 0.94630 0.89744 0.90120 0.88653 0.88619 0.92133 0.90834 0.92584 0.93476 0.89637 0.88484 0.89407 0.97503 0.96121 0.92312 0.88115 0.86986 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.47 71.98 0.68 -1.35 16 2 C 0.06 1.22 2.88 45.26 0.13 1.35 16 3 H 0.04 1.00 7.99 -2.39 -0.02 0.98 16 4 C -0.10 -1.26 6.04 31.80 0.19 -1.06 16 5 C -0.10 -1.40 3.59 -9.92 -0.04 -1.43 16 6 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 7 C -0.14 -1.47 8.89 71.98 0.64 -0.83 16 8 C 0.04 0.98 6.30 86.44 0.54 1.53 16 9 N -0.43 -10.44 4.98 -670.03 -3.34 -13.78 16 10 C 0.34 10.89 6.43 260.11 1.67 12.56 16 11 N -0.35 -13.88 11.08 -58.00 -0.64 -14.52 16 12 N -0.33 -14.20 12.18 -49.54 -0.60 -14.80 16 13 C 0.20 7.52 7.32 137.63 1.01 8.52 16 14 C -0.01 -0.37 5.46 29.84 0.16 -0.20 16 15 C 0.00 0.22 4.02 29.85 0.12 0.34 16 16 C -0.53 -29.50 9.66 25.60 0.25 -29.26 16 17 H 0.05 2.94 7.99 -2.91 -0.02 2.91 16 18 C 0.02 0.92 5.47 84.65 0.46 1.38 16 19 N -0.94 -57.98 13.96 21.45 0.30 -57.69 16 20 Si 0.94 44.82 27.47 68.60 1.88 46.70 16 21 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.57 6.53 99.48 0.65 -10.92 16 24 N -0.46 -14.67 3.21 -538.19 -1.73 -16.40 16 25 C 0.07 1.56 10.58 127.77 1.35 2.91 16 26 H 0.03 0.66 7.35 -2.39 -0.02 0.64 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.01 8.13 -2.39 -0.02 0.99 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.95 7.76 -2.38 -0.02 0.93 16 31 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 1.31 6.92 -2.39 -0.02 1.29 16 35 H 0.09 1.84 7.68 -2.38 -0.02 1.82 16 36 H 0.10 3.35 7.97 -2.39 -0.02 3.33 16 37 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.01 0.33 7.58 -2.39 -0.02 0.31 16 39 H 0.02 0.94 7.18 -2.39 -0.02 0.92 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.10 1.74 7.77 -2.39 -0.02 1.72 16 42 H 0.11 2.04 8.11 -2.38 -0.02 2.03 16 43 H 0.09 2.14 8.06 -2.39 -0.02 2.12 16 Total: -1.00 -72.31 345.55 3.96 -68.35 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.91 Total: 7.69 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 7.18 Total: -5.55 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.01 Total: -117.19 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -72.31 3.96 -68.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338562539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.095 kcal (2) G-P(sol) polarization free energy of solvation -72.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds