Wall clock time and date at job start Tue Mar 31 2020 00:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87947 * 2 1 4 4 C 1.54317 * 109.89070 * 121.19529 * 2 1 3 5 5 C 1.55143 * 103.01839 * 141.69106 * 4 2 1 6 6 C 1.54903 * 101.65469 * 324.34945 * 5 4 2 7 7 N 1.47445 * 109.89046 * 238.97038 * 2 1 3 8 8 C 1.38576 * 110.99815 * 3.84916 * 7 2 1 9 9 N 1.31222 * 126.47319 * 266.07618 * 8 7 2 10 10 N 1.28528 * 109.86072 * 179.97438 * 9 8 7 11 11 C 1.30291 * 110.05280 * 0.02562 * 10 9 8 12 12 C 1.50700 * 126.34609 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47097 * 90.02470 * 12 11 10 14 14 C 1.52998 * 109.47285 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47086 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99376 * 0.02562 * 15 14 13 17 17 C 1.37868 * 119.99924 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00345 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00219 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46829 * 59.99901 * 19 17 15 21 21 H 1.48495 * 109.47585 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47064 * 300.00566 * 19 17 15 23 23 N 1.36449 * 126.47432 * 85.76470 * 8 7 2 24 24 C 1.46503 * 127.13640 * 0.03694 * 23 8 7 25 25 H 1.09004 * 109.47116 * 177.86233 * 1 2 3 26 26 H 1.08996 * 109.47386 * 297.85940 * 1 2 3 27 27 H 1.08997 * 109.47401 * 57.86642 * 1 2 3 28 28 H 1.08996 * 110.71133 * 260.07581 * 4 2 1 29 29 H 1.09006 * 110.70628 * 23.13581 * 4 2 1 30 30 H 1.09005 * 110.99182 * 206.25779 * 5 4 2 31 31 H 1.09005 * 110.98876 * 82.44273 * 5 4 2 32 32 H 1.09002 * 110.37243 * 278.24299 * 6 5 4 33 33 H 1.08997 * 110.37810 * 155.89882 * 6 5 4 34 34 H 1.08996 * 109.47479 * 210.02833 * 12 11 10 35 35 H 1.08999 * 109.47380 * 330.03047 * 12 11 10 36 36 H 1.08996 * 109.47253 * 300.00502 * 13 12 11 37 37 H 1.09009 * 109.46615 * 60.00105 * 13 12 11 38 38 H 1.08999 * 109.47295 * 299.99970 * 14 13 12 39 39 H 1.08998 * 109.46691 * 60.00597 * 14 13 12 40 40 H 0.96999 * 120.00344 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.46844 * 90.00370 * 24 23 8 42 42 H 1.08999 * 109.46950 * 209.99901 * 24 23 8 43 43 H 1.08991 * 109.46758 * 329.99689 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0550 -0.7516 1.2413 5 6 3.2892 -1.5143 0.6919 6 6 2.8190 -1.8821 -0.7375 7 7 2.0316 -0.7147 -1.1881 8 6 0.9867 -1.1074 -2.0093 9 7 0.3793 -2.2705 -1.9966 10 7 -0.5430 -2.2912 -2.8915 11 6 -0.5781 -1.1523 -3.5234 12 6 -1.5171 -0.7799 -4.6417 13 6 -2.7818 -0.1480 -4.0566 14 6 -3.7349 0.2307 -5.1920 15 6 -4.9802 0.8537 -4.6157 16 1 -5.0815 0.9684 -3.5466 17 6 -5.9902 1.2771 -5.4532 18 7 -5.8670 1.1369 -6.7552 19 14 -7.5342 2.0487 -4.7390 20 1 -7.1694 3.2671 -3.9722 21 1 -8.4597 2.4152 -5.8408 22 1 -8.2009 1.0766 -3.8357 23 7 0.3912 -0.3555 -2.9798 24 6 0.7240 1.0188 -3.3629 25 1 -0.3633 -1.0270 -0.0383 26 1 -0.3634 0.4802 0.9085 27 1 -0.3634 0.5466 -0.8702 28 1 2.3514 -0.0493 2.0204 29 1 1.3044 -1.4473 1.6167 30 1 3.4883 -2.4102 1.2801 31 1 4.1658 -0.8672 0.6602 32 1 2.1940 -2.7749 -0.7134 33 1 3.6772 -2.0362 -1.3915 34 1 -1.0278 -0.0665 -5.3047 35 1 -1.7848 -1.6742 -5.2043 36 1 -3.2711 -0.8614 -3.3936 37 1 -2.5140 0.7464 -3.4939 38 1 -3.2453 0.9444 -5.8546 39 1 -4.0026 -0.6634 -5.7549 40 1 -6.5774 1.4351 -7.3445 41 1 1.4810 1.0042 -4.1470 42 1 -0.1710 1.5202 -3.7312 43 1 1.1096 1.5544 -2.4955 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338866621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:22 Heat of formation + Delta-G solvation = 75.319704 kcal Electronic energy + Delta-G solvation = -22101.339774 eV Core-core repulsion = 18989.687474 eV Total energy + Delta-G solvation = -3111.652300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.94942 -39.47702 -35.24880 -34.53819 -32.84430 -31.87258 -31.67455 -29.25486 -27.41688 -26.81512 -25.83615 -23.75019 -22.68157 -21.56662 -20.65633 -20.03626 -19.88446 -17.05715 -16.92640 -16.28801 -16.05075 -15.86116 -14.55943 -14.44275 -14.10236 -13.97600 -13.78743 -13.52138 -13.25656 -12.84269 -12.60658 -12.50315 -12.27040 -11.96228 -11.90388 -11.56395 -11.44130 -11.36704 -11.13189 -10.94154 -10.85731 -10.81891 -10.58641 -10.40290 -9.95902 -9.77619 -9.56441 -9.27798 -9.09946 -8.36873 -8.29064 -6.02162 -4.04670 1.88067 2.35599 3.02154 3.32136 3.36765 3.39414 3.63642 4.22890 4.34929 4.43920 4.53106 4.66465 4.74864 4.93583 5.05628 5.10334 5.11279 5.17954 5.26192 5.33412 5.34846 5.40956 5.49072 5.61013 5.63611 5.64844 5.79642 5.84930 5.90171 5.98567 6.04603 6.06870 6.16055 6.46565 6.61884 6.67539 6.75245 7.02587 7.27658 7.63008 7.76505 7.96928 8.39273 8.95946 9.01669 9.59562 11.09057 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.030533 B = 0.003511 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.826273 B = 7972.451505 C = 8362.667718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 H 0.093 0.907 4 C -0.135 4.135 5 C -0.127 4.127 6 C 0.051 3.949 7 N -0.453 5.453 8 C 0.343 3.657 9 N -0.322 5.322 10 N -0.291 5.291 11 C 0.202 3.798 12 C -0.036 4.036 13 C -0.102 4.102 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.473 5.473 24 C 0.079 3.921 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.017 0.983 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.598 -0.490 12.549 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.032 4.032 3 H 0.111 0.889 4 C -0.173 4.173 5 C -0.165 4.165 6 C -0.076 4.076 7 N -0.179 5.179 8 C -0.014 4.014 9 N -0.166 5.166 10 N -0.130 5.130 11 C -0.065 4.065 12 C -0.076 4.076 13 C -0.141 4.141 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.167 5.167 24 C -0.064 4.064 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.484 -1.517 12.474 23.185 hybrid contribution -0.978 1.462 0.314 1.787 sum 18.507 -0.055 12.787 22.495 Atomic orbital electron populations 1.22400 0.94760 1.03454 1.02590 1.22525 0.94704 0.98378 0.87553 0.88876 1.22849 0.97873 0.99589 0.97035 1.22700 0.97936 1.00731 0.95169 1.23077 0.97099 0.91864 0.95576 1.60523 1.16471 1.24688 1.16205 1.22215 0.95720 0.89435 0.94021 1.74470 1.06451 1.17798 1.17882 1.74016 1.14613 1.18448 1.05926 1.25292 0.92860 0.87831 1.00530 1.20354 0.93244 1.02586 0.91409 1.21650 0.93314 0.98634 1.00464 1.19094 0.92997 0.96738 0.92569 1.21181 1.01986 1.39778 0.93054 0.92813 1.25004 0.98486 0.96010 0.94837 1.69947 1.33661 1.47458 1.02375 0.86667 0.83040 0.79735 0.78620 1.20298 1.21252 1.20190 1.46161 1.28210 1.14375 1.27913 1.22034 1.03172 0.78923 1.02317 0.91323 0.91305 0.92330 0.90263 0.90660 0.90105 0.90479 0.90224 0.89772 0.90388 0.88463 0.92482 0.93691 0.96503 0.96140 0.92901 0.90225 0.88668 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 7.86 37.16 0.29 -1.78 16 2 C 0.08 0.75 3.99 -66.73 -0.27 0.48 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.07 6.47 -24.91 -0.16 -1.23 16 5 C -0.13 -0.93 7.08 -24.59 -0.17 -1.11 16 6 C 0.05 0.52 6.65 -2.30 -0.02 0.50 16 7 N -0.45 -5.30 5.20 -163.82 -0.85 -6.15 16 8 C 0.34 5.05 4.65 -318.88 -1.48 3.57 16 9 N -0.32 -5.67 10.21 30.31 0.31 -5.36 16 10 N -0.29 -5.56 12.18 32.99 0.40 -5.16 16 11 C 0.20 3.44 7.32 -154.02 -1.13 2.31 16 12 C -0.04 -0.61 5.43 -27.88 -0.15 -0.76 16 13 C -0.10 -2.05 5.13 -26.73 -0.14 -2.19 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 19 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 N -0.47 -6.83 2.49 -121.46 -0.30 -7.13 16 24 C 0.08 0.83 10.53 59.85 0.63 1.46 16 25 H 0.07 1.00 6.93 -51.93 -0.36 0.64 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.78 6.58 -51.93 -0.34 0.44 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.97 6.83 -51.93 -0.35 0.62 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.17 7.96 -51.93 -0.41 0.75 16 35 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.04 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.00 7.91 -51.93 -0.41 0.59 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -32.54 344.85 -10.00 -42.54 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.33 Total: -2.96 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -3.14 Total: -11.67 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.29 Total: -49.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.54 -10.00 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338866621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.860 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds