Wall clock time and date at job start Tue Mar 31 2020 00:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47156 * 2 1 4 4 C 1.53001 * 109.46853 * 240.00342 * 2 1 3 5 5 C 1.50699 * 109.47020 * 64.99589 * 4 2 1 6 6 H 1.07994 * 120.00233 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99797 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99982 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46546 * 90.00558 * 9 7 5 11 11 H 1.48503 * 109.47214 * 210.00098 * 9 7 5 12 12 H 1.48497 * 109.47364 * 330.00689 * 9 7 5 13 13 C 1.50701 * 109.47301 * 120.00612 * 2 1 3 14 14 N 1.30291 * 126.34834 * 60.04014 * 13 2 1 15 15 N 1.28532 * 110.05126 * 179.97438 * 14 13 2 16 16 C 1.31218 * 109.85896 * 359.74070 * 15 14 13 17 17 N 1.38576 * 126.47059 * 180.25923 * 16 15 14 18 18 C 1.46846 * 111.00230 * 62.34355 * 17 16 15 19 19 C 1.53035 * 109.52542 * 174.16192 * 18 17 16 20 20 C 1.53113 * 109.28203 * 59.17439 * 19 18 17 21 21 C 1.53121 * 109.16399 * 302.35232 * 20 19 18 22 22 C 1.46849 * 111.00294 * 298.13213 * 17 16 15 23 23 N 1.36450 * 107.05581 * 0.40438 * 16 15 14 24 24 C 1.46498 * 127.13699 * 179.86934 * 23 16 15 25 25 H 1.08995 * 109.47921 * 59.99428 * 1 2 3 26 26 H 1.08996 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46813 * 299.99820 * 1 2 3 28 28 H 1.08997 * 109.47615 * 184.99873 * 4 2 1 29 29 H 1.09004 * 109.47287 * 305.00252 * 4 2 1 30 30 H 0.96998 * 119.99852 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.46029 * 294.17352 * 18 17 16 32 32 H 1.09001 * 109.46135 * 54.14162 * 18 17 16 33 33 H 1.09001 * 109.50164 * 299.23480 * 19 18 17 34 34 H 1.08997 * 109.50363 * 179.12210 * 19 18 17 35 35 H 1.08997 * 109.52646 * 182.44243 * 20 19 18 36 36 H 1.09003 * 109.57024 * 62.28597 * 20 19 18 37 37 H 1.09003 * 109.49941 * 297.70601 * 21 20 19 38 38 H 1.09004 * 109.53678 * 177.61085 * 21 20 19 39 39 H 1.09005 * 109.45992 * 305.85791 * 22 17 16 40 40 H 1.08999 * 109.46079 * 65.83425 * 22 17 16 41 41 H 1.08996 * 109.47387 * 264.77509 * 24 23 16 42 42 H 1.09008 * 109.46942 * 144.77334 * 24 23 16 43 43 H 1.09000 * 109.47207 * 24.77973 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6411 0.0571 -2.4766 6 1 1.0805 0.9746 -2.3756 7 6 1.9930 -0.4016 -3.7284 8 7 2.6762 -1.5186 -3.8513 9 14 1.4980 0.5629 -5.2497 10 1 2.5628 1.5432 -5.5823 11 1 1.3117 -0.3712 -6.3890 12 1 0.2263 1.2833 -4.9871 13 6 2.0324 -0.7105 1.2304 14 7 1.7957 -1.9493 1.5575 15 7 2.3772 -2.2305 2.6687 16 6 3.0259 -1.1791 3.1109 17 7 3.7743 -1.1022 4.2747 18 6 4.9093 -2.0331 4.2330 19 6 5.7923 -1.8184 5.4643 20 6 4.9619 -2.0531 6.7291 21 6 3.7597 -1.1048 6.7242 22 6 2.9356 -1.3401 5.4564 23 7 2.8216 -0.1747 2.2101 24 6 3.3446 1.1921 2.2757 25 1 -0.3635 0.5139 -0.8898 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.1262 -0.7995 -1.2058 29 1 1.6052 -1.7197 -1.2953 30 1 2.9234 -1.8415 -4.7319 31 1 4.5383 -3.0579 4.2263 32 1 5.4939 -1.8527 3.3308 33 1 6.1748 -0.7978 5.4643 34 1 6.6261 -2.5201 5.4409 35 1 5.5753 -1.8591 7.6089 36 1 4.6116 -3.0851 6.7497 37 1 4.1102 -0.0728 6.7442 38 1 3.1411 -1.2959 7.6011 39 1 2.0868 -0.6564 5.4429 40 1 2.5741 -2.3683 5.4441 41 1 2.5984 1.8454 2.7279 42 1 3.5723 1.5428 1.2690 43 1 4.2524 1.2053 2.8790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339252399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:06 Heat of formation + Delta-G solvation = 46.163262 kcal Electronic energy + Delta-G solvation = -22148.131583 eV Core-core repulsion = 19035.214966 eV Total energy + Delta-G solvation = -3112.916618 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.04073 -40.00769 -37.12721 -35.91166 -34.73088 -33.94326 -31.93251 -30.03677 -28.83069 -28.41877 -25.94680 -25.55700 -24.13639 -23.77493 -22.14767 -21.06178 -20.28171 -18.64941 -18.31270 -17.46103 -17.27708 -16.50052 -15.91536 -15.82087 -15.54861 -15.02079 -14.76654 -14.49329 -14.42125 -14.38448 -14.11524 -13.80487 -13.56102 -13.30447 -12.98870 -12.82000 -12.72718 -12.44882 -12.26350 -12.22181 -12.03306 -11.76088 -11.58957 -11.48039 -11.47365 -11.40616 -11.18658 -11.04603 -10.55102 -9.98926 -9.92916 -8.16514 -6.28508 0.68728 1.24308 1.44154 1.46019 1.56876 1.75563 2.43801 2.65796 3.17655 3.42836 3.69362 3.77427 3.86765 3.92320 4.06526 4.19052 4.22964 4.34357 4.35067 4.41107 4.45571 4.52351 4.60683 4.63664 4.70123 4.76171 4.90117 4.93405 4.97520 5.08170 5.11184 5.16373 5.19425 5.24219 5.36603 5.44590 5.46142 5.57290 5.68502 5.70545 5.83111 6.18502 6.21823 6.87459 7.40908 7.69435 8.96135 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.035421 B = 0.003659 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.311279 B = 7650.269974 C = 7834.426620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.008 3.992 3 H 0.099 0.901 4 C 0.050 3.950 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.256 1.256 13 C 0.204 3.796 14 N -0.330 5.330 15 N -0.352 5.352 16 C 0.333 3.667 17 N -0.449 5.449 18 C 0.063 3.937 19 C -0.106 4.106 20 C -0.122 4.122 21 C -0.106 4.106 22 C 0.065 3.935 23 N -0.468 5.468 24 C 0.072 3.928 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.062 0.938 28 H -0.022 1.022 29 H -0.011 1.011 30 H 0.262 0.738 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 7.339 22.028 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.013 4.013 3 H 0.117 0.883 4 C 0.012 3.988 5 C -0.566 4.566 6 H 0.096 0.904 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.179 1.179 13 C -0.065 4.065 14 N -0.170 5.170 15 N -0.196 5.196 16 C -0.024 4.024 17 N -0.176 5.176 18 C -0.064 4.064 19 C -0.144 4.144 20 C -0.159 4.159 21 C -0.143 4.143 22 C -0.062 4.062 23 N -0.159 5.159 24 C -0.069 4.069 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.081 0.919 28 H -0.004 1.004 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.527 6.328 21.915 23.256 hybrid contribution 0.124 0.182 -1.319 1.337 sum 4.651 6.510 20.596 22.096 Atomic orbital electron populations 1.21581 0.92239 1.01602 1.02107 1.19788 0.97320 0.97966 0.86202 0.88315 1.18849 0.93618 0.94862 0.91449 1.21582 1.35040 1.08923 0.91094 0.90359 1.26038 0.95050 0.95960 1.02997 1.70157 1.40152 1.23133 1.24384 0.85402 0.79317 0.78131 0.77920 1.19686 1.21584 1.17933 1.25444 0.95384 0.91799 0.93893 1.73939 1.22000 1.12766 1.08254 1.74428 1.13290 1.24443 1.07395 1.22626 1.00580 0.85459 0.93725 1.58896 1.08439 1.53413 0.96895 1.22233 0.90466 0.92960 1.00754 1.21597 0.97189 1.03627 0.91941 1.21626 0.96824 0.99325 0.98150 1.21603 0.96794 1.01248 0.94698 1.22242 0.95370 1.00008 0.88582 1.46474 1.38393 1.13674 1.17394 1.22372 1.02009 0.76949 1.05568 0.90564 0.94215 0.91868 1.00367 0.99298 0.92975 0.94817 0.92042 0.90011 0.89533 0.89125 0.92448 0.90003 0.89160 0.91146 0.94775 0.87909 0.88819 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 8.98 71.98 0.65 -3.77 16 2 C 0.01 0.34 2.71 -11.54 -0.03 0.31 16 3 H 0.10 3.55 7.07 -2.39 -0.02 3.53 16 4 C 0.05 2.72 4.43 29.85 0.13 2.85 16 5 C -0.53 -28.94 8.41 25.60 0.22 -28.72 16 6 H 0.08 3.90 7.06 -2.91 -0.02 3.88 16 7 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 8 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 9 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 13 C 0.20 8.45 6.58 137.64 0.91 9.35 16 14 N -0.33 -15.60 12.18 -49.54 -0.60 -16.20 16 15 N -0.35 -15.07 12.19 -58.01 -0.71 -15.78 16 16 C 0.33 11.50 6.41 260.12 1.67 13.17 16 17 N -0.45 -11.51 4.64 -706.17 -3.28 -14.79 16 18 C 0.06 1.50 5.38 86.33 0.46 1.96 16 19 C -0.11 -1.57 6.09 30.64 0.19 -1.39 16 20 C -0.12 -1.52 6.00 30.67 0.18 -1.33 16 21 C -0.11 -1.42 6.09 30.65 0.19 -1.23 16 22 C 0.06 1.40 5.38 86.32 0.46 1.87 16 23 N -0.47 -15.66 3.21 -538.19 -1.73 -17.39 16 24 C 0.07 1.58 10.82 127.77 1.38 2.96 16 25 H 0.08 2.83 6.95 -2.39 -0.02 2.81 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 28 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.07 1.56 8.10 -2.38 -0.02 1.54 16 40 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 2.03 7.45 -2.38 -0.02 2.02 16 43 H 0.11 2.01 8.11 -2.39 -0.02 1.99 16 Total: -1.00 -75.08 346.11 3.83 -71.25 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.97 Total: 9.09 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 6.87 Total: -3.68 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -6.03 Total: -122.15 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -75.08 3.83 -71.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339252399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.416 kcal (2) G-P(sol) polarization free energy of solvation -75.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds