Wall clock time and date at job start Tue Mar 31 2020 00:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47207 * 2 1 4 4 C 1.36736 * 127.13621 * 94.87894 * 3 2 1 5 5 C 1.50693 * 126.35032 * 0.02562 * 4 3 2 6 6 C 1.52998 * 109.47296 * 89.99572 * 5 4 3 7 7 C 1.50706 * 109.47123 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99616 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99950 * 179.72687 * 7 6 5 10 10 N 1.31514 * 119.99926 * 0.27749 * 9 7 6 11 11 Si 1.86799 * 119.99919 * 180.27660 * 9 7 6 12 12 H 1.48498 * 109.47033 * 89.99995 * 11 9 7 13 13 H 1.48505 * 109.47116 * 210.00040 * 11 9 7 14 14 H 1.48499 * 109.47357 * 330.00133 * 11 9 7 15 15 N 1.30301 * 107.30163 * 180.26197 * 4 3 2 16 16 N 1.28524 * 110.05128 * 359.56218 * 15 4 3 17 17 C 1.31215 * 109.86629 * 0.44761 * 16 15 4 18 18 N 1.38570 * 126.47496 * 179.72979 * 17 16 15 19 19 C 1.47903 * 111.00224 * 113.99745 * 18 17 16 20 20 C 1.53994 * 107.05844 * 214.15518 * 19 18 17 21 21 C 1.54597 * 105.13842 * 1.22285 * 20 19 18 22 22 C 1.48536 * 111.00212 * 356.59862 * 18 17 16 23 23 H 1.08990 * 110.66798 * 41.28201 * 22 18 17 24 24 C 1.53003 * 110.66395 * 278.15105 * 22 18 17 25 25 H 1.08999 * 109.47348 * 184.43526 * 1 2 3 26 26 H 1.09007 * 109.46906 * 304.43119 * 1 2 3 27 27 H 1.08994 * 109.46994 * 64.42772 * 1 2 3 28 28 H 1.09003 * 109.47172 * 239.99608 * 2 1 3 29 29 H 1.09002 * 109.47120 * 119.99827 * 2 1 3 30 30 H 1.09004 * 109.47286 * 329.99678 * 5 4 3 31 31 H 1.09005 * 109.47510 * 209.99989 * 5 4 3 32 32 H 1.08997 * 109.47012 * 60.00503 * 6 5 4 33 33 H 1.09000 * 109.47297 * 299.99909 * 6 5 4 34 34 H 0.97000 * 119.99478 * 180.02562 * 10 9 7 35 35 H 1.09009 * 109.91528 * 333.50498 * 19 18 17 36 36 H 1.08991 * 109.92372 * 94.60066 * 19 18 17 37 37 H 1.09003 * 110.30773 * 120.13439 * 20 19 18 38 38 H 1.08998 * 110.30961 * 242.29910 * 20 19 18 39 39 H 1.09004 * 110.72207 * 140.32038 * 21 20 19 40 40 H 1.08995 * 110.72075 * 263.41812 * 21 20 19 41 41 H 1.09004 * 109.46418 * 60.00459 * 24 22 18 42 42 H 1.09001 * 109.46963 * 179.97438 * 24 22 18 43 43 H 1.08997 * 109.47414 * 300.00382 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3809 2.1286 1.0861 5 6 2.3545 1.6836 2.5256 6 6 3.7007 1.0543 2.8897 7 6 3.6740 0.6087 4.3292 8 1 2.7855 0.7590 4.9245 9 6 4.7817 0.0037 4.8842 10 7 5.8634 -0.1796 4.1590 11 14 4.7459 -0.5555 6.6661 12 1 4.2545 -1.9551 6.7359 13 1 6.1156 -0.4828 7.2354 14 1 3.8392 0.3267 7.4437 15 7 2.7487 3.2986 0.6461 16 7 2.6526 3.3378 -0.6350 17 6 2.2057 2.1887 -1.0839 18 7 1.9688 1.8577 -2.4085 19 6 2.8963 0.7998 -2.8647 20 6 3.2032 1.0770 -4.3480 21 6 2.4211 2.3664 -4.6881 22 6 2.2117 3.0210 -3.2996 23 1 3.1059 3.5622 -2.9905 24 6 0.9961 3.9499 -3.3184 25 1 -0.3634 -1.0246 0.0795 26 1 -0.3633 0.5811 0.8477 27 1 -0.3633 0.4436 -0.9270 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5609 0.9495 2.6645 31 1 2.1699 2.5442 3.1687 32 1 4.4943 1.7884 2.7510 33 1 3.8853 0.1937 2.2468 34 1 6.6425 -0.6056 4.5494 35 1 3.8167 0.8364 -2.2819 36 1 2.4269 -0.1778 -2.7559 37 1 4.2724 1.2345 -4.4901 38 1 2.8564 0.2496 -4.9671 39 1 3.0105 3.0155 -5.3357 40 1 1.4648 2.1262 -5.1525 41 1 0.8010 4.3134 -2.3094 42 1 1.1952 4.7956 -3.9766 43 1 0.1263 3.4029 -3.6820 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339647939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:53 Heat of formation + Delta-G solvation = 69.417101 kcal Electronic energy + Delta-G solvation = -22378.510675 eV Core-core repulsion = 19266.602419 eV Total energy + Delta-G solvation = -3111.908256 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.59203 -39.20941 -35.52272 -34.13016 -32.58748 -31.56621 -31.34942 -30.13917 -28.10626 -25.90660 -25.19121 -23.93316 -22.26304 -21.84621 -21.02926 -20.03457 -19.49684 -17.28356 -16.44961 -16.32302 -15.81088 -15.27744 -14.69794 -14.48852 -14.31782 -13.70378 -13.37968 -13.21003 -13.08685 -12.95110 -12.62038 -12.30766 -12.21041 -12.05408 -11.92320 -11.55961 -11.33309 -11.17263 -11.01566 -10.99915 -10.91052 -10.72871 -10.63704 -10.30386 -10.01304 -9.88586 -9.70109 -9.27055 -9.17868 -8.42069 -7.93701 -6.06358 -4.10469 2.16482 2.58185 3.28506 3.30305 3.35749 3.39402 3.81306 4.29780 4.40533 4.45599 4.67294 4.76860 5.00223 5.01084 5.04923 5.21662 5.25275 5.28988 5.30651 5.39713 5.46256 5.51726 5.53949 5.62208 5.67656 5.69075 5.76709 5.85930 5.91611 6.05756 6.10648 6.23067 6.28359 6.38662 6.49536 6.64471 6.71559 6.98557 7.49516 7.54657 7.68792 7.91238 8.28924 8.95695 9.25933 9.54248 11.04765 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.027514 B = 0.003982 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.406317 B = 7029.781705 C = 7074.302758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.104 3.896 3 N -0.475 5.475 4 C 0.212 3.788 5 C -0.031 4.031 6 C 0.032 3.968 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.272 1.272 15 N -0.297 5.297 16 N -0.322 5.322 17 C 0.329 3.671 18 N -0.432 5.432 19 C 0.036 3.964 20 C -0.127 4.127 21 C -0.120 4.120 22 C 0.080 3.920 23 H 0.079 0.921 24 C -0.133 4.133 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.025 0.975 33 H 0.013 0.987 34 H 0.262 0.738 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.790 -0.320 -17.429 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.170 5.170 4 C -0.055 4.055 5 C -0.071 4.071 6 C -0.006 4.006 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.531 5.531 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.197 1.197 15 N -0.136 5.136 16 N -0.166 5.166 17 C -0.028 4.028 18 N -0.157 5.157 19 C -0.092 4.092 20 C -0.166 4.166 21 C -0.158 4.158 22 C -0.027 4.027 23 H 0.097 0.903 24 C -0.191 4.191 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.655 0.853 -17.457 19.967 hybrid contribution 0.403 -1.623 1.041 1.970 sum -9.251 -0.769 -16.416 18.859 Atomic orbital electron populations 1.22094 0.93968 1.02948 1.03166 1.21879 0.95757 0.79250 1.04956 1.46270 1.50916 1.13706 1.06078 1.25534 0.99247 0.88151 0.92590 1.20423 1.02562 1.01139 0.82956 1.19068 0.89598 0.95475 0.96476 1.21150 0.99624 1.39202 0.96234 0.92278 1.25009 0.95404 0.95832 0.97986 1.69974 1.03575 1.43157 1.36429 0.86557 0.77397 0.78975 0.84873 1.20673 1.21173 1.19697 1.73993 1.19957 1.17361 1.02252 1.74460 1.19496 1.18383 1.04306 1.22574 1.02672 0.89682 0.87893 1.61531 1.48118 1.09813 0.96274 1.22978 0.94781 0.95261 0.96139 1.22375 1.00843 0.98605 0.94740 1.22586 1.00937 0.96191 0.96123 1.22734 0.99708 0.90092 0.90207 0.90341 1.21626 0.96585 0.98138 1.02713 0.90612 0.91841 0.91683 0.89450 0.87801 0.91282 0.89341 0.95657 0.96888 0.92883 0.92718 0.89687 0.90898 0.90476 0.90371 0.90401 0.91863 0.91905 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 10.24 37.16 0.38 -1.46 16 2 C 0.10 1.41 6.59 -4.04 -0.03 1.38 16 3 N -0.47 -8.22 2.81 -114.09 -0.32 -8.54 16 4 C 0.21 4.33 7.32 -154.02 -1.13 3.21 16 5 C -0.03 -0.64 5.32 -27.89 -0.15 -0.79 16 6 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 11 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 N -0.30 -6.62 12.18 32.99 0.40 -6.22 16 16 N -0.32 -6.54 10.68 30.31 0.32 -6.22 16 17 C 0.33 5.69 6.59 -318.89 -2.10 3.59 16 18 N -0.43 -5.86 5.02 -163.14 -0.82 -6.68 16 19 C 0.04 0.41 5.83 -2.75 -0.02 0.40 16 20 C -0.13 -1.11 6.93 -25.37 -0.18 -1.28 16 21 C -0.12 -1.04 6.50 -24.87 -0.16 -1.20 16 22 C 0.08 0.96 2.57 -65.79 -0.17 0.79 16 23 H 0.08 1.11 7.43 -51.93 -0.39 0.73 16 24 C -0.13 -1.50 9.47 37.16 0.35 -1.15 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.01 6.06 -51.93 -0.31 0.70 16 29 H 0.10 1.48 7.63 -51.93 -0.40 1.08 16 30 H 0.07 1.28 7.78 -51.93 -0.40 0.88 16 31 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.05 0.75 7.75 -51.92 -0.40 0.35 16 36 H 0.08 0.85 6.90 -51.93 -0.36 0.49 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.61 8.03 -51.93 -0.42 0.19 16 41 H 0.06 0.88 7.73 -51.93 -0.40 0.48 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -32.49 346.60 -10.49 -42.98 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.27 Total: -2.01 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -3.74 Total: -8.92 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.32 Total: -53.43 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.49 -10.49 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339647939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.398 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds